Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009491

Physical Location & Seq

Genomic Coordinates Reverse (-)

794270 .. 800188

Gene Structure 5919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1008500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTCCAAAAGGGTTCTCTGCAAGTTTTTTGCACATGGCGCCTGTTTGAAAGGGGAGCATTGTGAGTTTTCACATGATTGGAAGGCTTCACCAAATAATATATGTACCTTTTATCAGAAAGGAGCTTGTGCATTTGGTAATAGATGCAGATATGAACATGTCAAAGCTTCTCGGGCTCAGTCTTTCGGTTCATCTTCATCAACAAATTCTCAGCCATCCCTGGCTATTGATTCTGCATCTTTGGCTCTTCCTGCAAGAACCTTAACAAGTGGAGTTTCTCTTGCGCCACTCTCTCTTTCAGAACTCTCTGCTTCAAGTAGTCCTTTCTTACCTCCCTCTAAACCTGCCTGGAATTGTTCTCTGGATGGTGATTATGATGATGATGAAAGTAGTGTTGGGGAGACTAGGAATACTAGACCAGAAGATCGTGCTATTTGTTCATTTGCTGCAGCTGGTAATTGCCCTCGTGGAGAAAAATGTCCTCATATTCATGGAGATATATGCCCCAGCTGTGGAAAACATTGCTTGCATCCTTACAGACCTTTGGAAGGGGAGGAGCATATGAAGATATGTGAGGAAAAGCAGAAGCAACTTGAGGCTTTGAAATGCAGTCAAGAAATAGAATGCAGTGTTTGCCTAGAACGTGTTTTGTCAAAGCCCACAGTTGCTGAGCGGAAGTTTGGGATACTCTCAGAATGTGATCATCCTTTTTGCATATCTTGTATTAGAAATTGGCGCAGTAGTTCCCCAACATCTGGTATGGATGTCAATAGCGCATTGAGAGCTTGTCCAATATGTCGGAAGCTGTCATACTTTGTCATTCCAAGTGTCATTTGGTATAAGTCAAAAGAAGAGAAGCAGGAAATTGTTGACAGCTACAAAGCAAGGCTCAGGTCAATTGATTGCAAGCACTTTGATTTTGGAAATGGGAACTGCCCATTTGGAACTAGTTGTTTTTATAAGCATGCATATCGAGATGGCTGTTTGGAGGAAGTAGCACTGCGTCATCTTGGAAATGAAGATGGTCAGACAGTGATAGCCACAAATATTAGGTTGTCAGACTTTCTTGCCGACCTACACATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

363

Amino Acids

40.14

Weight (kDa)

7.44

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_3	PF15663	6 - 60	9.9e-07	Zinc-finger containing family
zf-CCCH_4	PF18044	34 - 53	6.9e-07	CCCH-type zinc finger
zf-RING_2	PF13639	208 - 267	1.4e-06	Ring finger domain
zf-C3HC4	PF00097	209 - 266	4.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08505 AT3G08505 AT3G08505
fragaria_vesca	FvH4_7g00890 FvH4_7g00890 FvH4_7g00890
malus_domestica	MD02G1313900.v1.1 MD07G1008500.v1.1
prunus_persica	Prupe.2G011700_v2.0.a1 Prupe.2G011700_v2.0.a1
pyrus_communis	pycom02g26320 pycom07g00730
rosa_chinensis	RchiOBHm_Chr1g0315781
rosa_laevigata	RLG00000030733
rosa_multiflora	Rmu_sc0009816.1_g000006
rosa_roxburghii	Rroxscaffold_4G00331440
rosa_rugosa	Rorug01G0005500
rosa_samantha	Rh1AG016400 Rh1BG008800 Rh1CG013700 Rh1DG009500
rosa_wichuraiana	Rw1G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccBSI	CCGCTC	1 cut(s)	673
AciI	CCGC	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	3 cut(s)	512, 548, 755
AflIII	ACRYGT	2 cut(s)	157, 643
AgsI	TTSAA	3 cut(s)	49, 315, 604
AhlI	ACTAGT	1 cut(s)	947
AjnI	CCWGG	2 cut(s)	219, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	7 cut(s)	125, 167, 452, 510, 785, 805, 876
AluI	AGCT	7 cut(s)	125, 167, 452, 510, 785, 805, 876
Alw26I	GTCTC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	446, 449
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	4 cut(s)	41, 286, 738, 776
AsuHPI	GGTGA	2 cut(s)	81, 380
AvaI	CYCGRG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	178
BarI	GAAGNNNNNNTAC	2 cut(s)	794, 826
BauI	CACGAG	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	433, 461
BccI	CCATC	4 cut(s)	223, 359, 971, 1016
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BciT130I	CCWGG	2 cut(s)	221, 349
BciVI	GTATCC	1 cut(s)	678
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	947
BfaI	CTAG	4 cut(s)	405, 414, 638, 948
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	2 cut(s)	447, 450
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	2 cut(s)	448, 451
Bme1390I	CCNGG	2 cut(s)	221, 349
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	221, 349
BmsI	GCATC	3 cut(s)	134, 245, 538
Bpu10I	CCTNAGC	1 cut(s)	890
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	3 cut(s)	512, 548, 755
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	221, 349
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	5 cut(s)	215, 370, 529, 703, 769
BseLI	CCNNNNNNNGG	3 cut(s)	512, 548, 755
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	5 cut(s)	191, 224, 660, 705, 904
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	433, 461
BseYI	CCCAGC	1 cut(s)	506
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	512, 548, 755
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	424, 700
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	1 cut(s)	673
BspCNI	CTCAG	5 cut(s)	190, 223, 661, 704, 903
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	424, 700
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	221, 349
Bst4CI	ACNGT	2 cut(s)	664, 1033
Bst6I	CTCTTC	2 cut(s)	252, 846
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	633
BstC8I	GCNNGC	3 cut(s)	527, 908, 966
BstDEI	CTNAG	5 cut(s)	177, 210, 669, 691, 890
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	5 cut(s)	215, 370, 529, 703, 769
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	4 cut(s)	41, 286, 738, 776
BstKTI	GATC	2 cut(s)	427, 703
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	424, 700
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 173, 242, 251, 633, 782
BstNI	CCWGG	2 cut(s)	221, 349
BstNSI	RCATGY	2 cut(s)	161, 968
BstSCI	CCNGG	2 cut(s)	219, 347
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	433, 461
BsuI	GTATCC	1 cut(s)	678
BtsCI	GGATG	5 cut(s)	215, 370, 529, 703, 769
BtsI	GCAGTG	2 cut(s)	634, 998
BtsIMutI	CAGTG	3 cut(s)	634, 998, 1038
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	3 cut(s)	527, 908, 966
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	4 cut(s)	41, 286, 738, 776
CseI	GACGC	1 cut(s)	992
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	5 cut(s)	35, 74, 158, 491, 965
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	5 cut(s)	177, 210, 669, 691, 890
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	2 cut(s)	426, 702
DpnII	GATC	2 cut(s)	424, 700
Eam1104I	CTCTTC	2 cut(s)	252, 846
EarI	CTCTTC	2 cut(s)	252, 846
Eco24I	GRGCYC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	171
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	219, 347
EcoT22I	ATGCAT	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	178
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	5 cut(s)	38, 77, 161, 494, 968
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	5 cut(s)	34, 73, 157, 490, 964
FauNDI	CATATG	1 cut(s)	561
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	447, 450
FokI	GGATG	5 cut(s)	202, 377, 516, 690, 776
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	447, 450
FspBI	CTAG	4 cut(s)	405, 414, 638, 948
GlaI	GCGC	4 cut(s)	40, 285, 737, 775
GluI	GCNGC	2 cut(s)	447, 450
GsaI	CCCAGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	42
HgaI	GACGC	1 cut(s)	992
HhaI	GCGC	4 cut(s)	41, 286, 738, 776
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	38, 77, 161, 494, 968
Hin6I	GCGC	4 cut(s)	39, 284, 736, 774
HinP1I	GCGC	4 cut(s)	39, 284, 736, 774
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	2 cut(s)	81, 380
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	6 cut(s)	117, 301, 694, 801, 1029, 1060
Hpy188III	TCNNGA	3 cut(s)	362, 614, 974
Hpy8I	GTNNAC	1 cut(s)	871
HpyAV	CCTTC	2 cut(s)	76, 542
HpyCH4III	ACNGT	2 cut(s)	664, 1033
HpyCH4IV	ACGT	1 cut(s)	643
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 173, 242, 251, 633, 782
HpyF3I	CTNAG	5 cut(s)	177, 210, 669, 691, 890
HpySE526I	ACGT	1 cut(s)	643
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	38, 77, 161, 494, 968
HspAI	GCGC	4 cut(s)	39, 284, 736, 774
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	2 cut(s)	424, 700
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	3 cut(s)	55, 122, 556
Lsp1109I	GCAGC	2 cut(s)	433, 461
LweI	GCATC	3 cut(s)	134, 245, 538
MaeI	CTAG	4 cut(s)	405, 414, 638, 948
MaeII	ACGT	1 cut(s)	643
MalI	GATC	2 cut(s)	426, 702
MbiI	CCGCTC	1 cut(s)	673
MboI	GATC	2 cut(s)	424, 700
MboII	GAAGA	6 cut(s)	186, 239, 434, 577, 863, 1031
MfeI	CAATTG	1 cut(s)	897
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	6 cut(s)	205, 352, 457, 730, 864, 897
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	779
MnlI	CCTC	8 cut(s)	342, 346, 474, 492, 547, 568, 589, 982
Mph1103I	ATGCAT	1 cut(s)	970
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	452, 510
MspR9I	CCNGG	2 cut(s)	221, 349
MunI	CAATTG	1 cut(s)	897
Mva1269I	GAATGC	1 cut(s)	629
MvaI	CCWGG	2 cut(s)	221, 349
MwoI	GCNNNNNNNGC	6 cut(s)	38, 173, 242, 251, 633, 782
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	2 cut(s)	424, 700
NlaIII	CATG	5 cut(s)	38, 77, 161, 494, 968
NlaIV	GGNNCC	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	2 cut(s)	161, 968
PaeI	GCATGC	1 cut(s)	968
PciI	ACATGT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	252
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	755
PkrI	GCNGC	2 cut(s)	448, 451
PluTI	GGCGCC	1 cut(s)	42
PscI	ACATGT	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	960
Psp6I	CCWGG	2 cut(s)	219, 347
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	219, 347
PspN4I	GGNNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	668
PvuII	CAGCTG	2 cut(s)	452, 510
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	2 cut(s)	447, 450
Sau3AI	GATC	2 cut(s)	424, 700
ScrFI	CCNGG	2 cut(s)	221, 349
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	3 cut(s)	134, 245, 538
SfcI	CTRYAG	1 cut(s)	447
SfoI	GGCGCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SpeI	ACTAGT	1 cut(s)	947
SphI	GCATGC	1 cut(s)	968
Sse9I	AATT	6 cut(s)	205, 352, 457, 730, 864, 897
SsiI	CCGC	1 cut(s)	673
SspDI	GGCGCC	1 cut(s)	38
SspI	AATATT	1 cut(s)	1048
SspMI	CTAG	4 cut(s)	405, 414, 638, 948
StyD4I	CCNGG	2 cut(s)	219, 347
TaaI	ACNGT	2 cut(s)	664, 1033
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	1 cut(s)	973
TasI	AATT	6 cut(s)	205, 352, 457, 730, 864, 897
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	3 cut(s)	634, 1005, 1038
TseI	GCWGC	2 cut(s)	446, 449
TspDTI	ATGAA	8 cut(s)	168, 180, 186, 399, 429, 479, 578, 1032
TspRI	CASTG	3 cut(s)	634, 1005, 1038
Van91I	CCANNNNNTGG	1 cut(s)	755
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	2 cut(s)	161, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XspI	CTAG	4 cut(s)	405, 414, 638, 948
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.