Rorug01G0005500

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009491
Physical Location & Seq
Reverse (-)
1065583 .. 1069318
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0005500.1

Sequence Viewer

Length: 1047 bp
ATGGCGTCGAGACTAGCTTTGCTTGCATTTGTTTTTGCGCTGGTGGTGAATGTCGTCGCCGCTTCTTCAAGCCCGTCCTCTCAGCACCGACGTCGGCCTCGTCAAGAGCCAAGTTACCTGAAGTTTGTTCCCAACGCCACTGACTTCCCATCGGAAGACTACTATGACTACATTATCATGGGAGGTGGCACTGCTGGGTGCTCTTTGGCTGCGACACTATCATCCAGGTTTCGGGTCCTCCAACTTGAAAAAGGTGGTGTTGCTTATGGCAATCGAAACTTGATGACCCAGGAAGGTTTCTTGGCCGCACTCATGGATGTCAACAACTTTGACTCCCCGACACAAGCCTTCACATCTGAAGATGGTGTTCCAAATGTCCGAGGACGCATTCTTGGAGGCAACAGTGCCATAAATGCTGGTTTCTATAGCCATGCAGATCACGAATCCTACAAAAGGTCCACTTCCAAATGGGATCTTAAATTGGTGAATGACTCCCATGAGTTGGTTGAAAGAGCAACTGTCTTCAGGCCTGATCTTAGGAATTGGCAGTCAGCAGTTCGAGATGGCTTATTGCAAGCTGGTATTGATCCCTATAATGGGTATTGTTTTGATCATGTAGTGGGGACCAAGACTAGTGGTTCGACATTTGATACTTTGGGAAGGAGACACAGTGCTGCTGACCTTCTTAAATATGCAAAGCCATTGAATATTCGAGTTGCAGTGCATGCCACTGTGGAAAAAGTTTTGTTGGCTTCATCTACTTCATCTCCAGTGTCGAGGCAGTCTACTGTTGGAGTTGTTTTTCGTGACAGAAGTGGGAGGTATCACCATGCTATGCTACGAAAACATGGAGAGGTCCTTCTCTCAGCTGCTTCAATTGGAACTCCACAGCTGCTTCTACTTAGTGGTTTTAGCCCTAGGCCTTGTCTTCCATATCTGGAGATCCCAGTCCATACGCATGCAGCTGAATCAGCCAAAGCCATTGCATCCCCTGCCCGCTCTGTCCACTCAAACCCTGGCAAGGTTCTAAAAATCGCTAAGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-CCCH zf-RING_2

Protein Analysis

348

Amino Acids

37.88

Weight (kDa)

9.68

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 55 - 306 2.7e-13 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 94
AccB7I CCANNNNNTGG 1 cut(s) 502
AccBSI CCGCTC 1 cut(s) 999
AccI GTMKAC 1 cut(s) 785
AciI CCGC 3 cut(s) 60, 306, 997
AclWI GGATC 3 cut(s) 480, 581, 937
AcoI YGGCCR 1 cut(s) 303
AcuI CTGAAG 3 cut(s) 140, 378, 508
AcyI GRCGYC 2 cut(s) 5, 91
AfeI AGCGCT 1 cut(s) 1043
AfiI CCNNNNNNNGG 6 cut(s) 231, 453, 502, 596, 597, 1021
AgsI TTSAA 5 cut(s) 69, 248, 509, 706, 876
AhlI ACTAGT 1 cut(s) 632
AjnI CCWGG 3 cut(s) 224, 288, 1015
AluBI AGCT 5 cut(s) 17, 578, 869, 892, 965
AluI AGCT 5 cut(s) 17, 578, 869, 892, 965
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 4, 658
AlwI GGATC 3 cut(s) 480, 581, 937
Aor51HI AGCGCT 1 cut(s) 1043
AoxI GGCC 4 cut(s) 95, 303, 527, 920
ApeKI GCWGC 5 cut(s) 209, 674, 869, 892, 962
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AspA2I CCTAGG 1 cut(s) 917
AspLEI GCGC 2 cut(s) 40, 1044
AspS9I GGNCC 4 cut(s) 235, 456, 624, 856
AsuHPI GGTGA 3 cut(s) 58, 496, 818
AvaII GGWCC 4 cut(s) 235, 456, 624, 856
AvrII CCTAGG 1 cut(s) 917
BbsI GAAGAC 3 cut(s) 162, 514, 920
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 5 cut(s) 196, 661, 856, 879, 974
BccI CCATC 3 cut(s) 157, 356, 557
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 3 cut(s) 226, 290, 1017
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 4, 658
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 4 cut(s) 14, 633, 918, 1045
BfmI CTRYAG 1 cut(s) 424
BfoI RGCGCY 1 cut(s) 1045
BisI GCNGC 7 cut(s) 60, 210, 306, 675, 870, 893, 963
BlnI CCTAGG 1 cut(s) 917
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 7 cut(s) 61, 211, 307, 676, 871, 894, 964
Bme1390I CCNGG 3 cut(s) 226, 290, 1017
Bme18I GGWCC 4 cut(s) 235, 456, 624, 856
BmgT120I GGNCC 4 cut(s) 235, 456, 624, 856
BmiI GGNNCC 2 cut(s) 236, 625
BmrFI CCNGG 3 cut(s) 226, 290, 1017
BmrI ACTGGG 1 cut(s) 941
BmsI GCATC 1 cut(s) 995
BmuI ACTGGG 1 cut(s) 941
BpiI GAAGAC 3 cut(s) 162, 514, 920
BpmI CTGGAG 2 cut(s) 753, 959
Bpu1102I GCTNAGC 1 cut(s) 1038
BsaHI GRCGYC 2 cut(s) 5, 91
BsaJI CCNNGG 4 cut(s) 288, 379, 917, 1015
BsaXI ACNNNNNCTCC 6 cut(s) 317, 347, 655, 685, 751, 781
Bsc4I CCNNNNNNNGG 6 cut(s) 231, 453, 502, 596, 597, 1021
Bse1I ACTGG 2 cut(s) 770, 947
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 3 cut(s) 226, 290, 1017
BseDI CCNNGG 4 cut(s) 288, 379, 917, 1015
BseGI GGATG 3 cut(s) 221, 322, 986
BseLI CCNNNNNNNGG 6 cut(s) 231, 453, 502, 596, 597, 1021
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 2 cut(s) 95, 879
BseNI ACTGG 2 cut(s) 770, 947
BseXI GCAGC 5 cut(s) 196, 661, 856, 879, 974
BseYI CCCAGC 1 cut(s) 194
BshFI GGCC 4 cut(s) 97, 305, 529, 922
BsiHKAI GWGCWC 1 cut(s) 203
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 6 cut(s) 231, 453, 502, 596, 597, 1021
BsmAI GTCTC 2 cut(s) 4, 658
BsmFI GGGAC 1 cut(s) 637
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 4 cut(s) 97, 305, 529, 922
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 6 cut(s) 436, 472, 532, 586, 610, 942
Bsp1720I GCTNAGC 1 cut(s) 1038
BspACI CCGC 3 cut(s) 60, 306, 997
BspANI GGCC 4 cut(s) 97, 305, 529, 922
BspCNI CTCAG 2 cut(s) 94, 878
BspLI GGNNCC 2 cut(s) 236, 625
BspPI GGATC 3 cut(s) 480, 581, 937
BsrBI CCGCTC 1 cut(s) 999
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 2 cut(s) 770, 947
BssECI CCNNGG 4 cut(s) 288, 379, 917, 1015
BssMI GATC 6 cut(s) 436, 472, 532, 586, 610, 942
BssNI GRCGYC 2 cut(s) 5, 91
BssT1I CCWWGG 1 cut(s) 917
Bst2UI CCWGG 3 cut(s) 226, 290, 1017
Bst4CI ACNGT 5 cut(s) 404, 520, 671, 733, 790
BstACI GRCGYC 2 cut(s) 5, 91
BstAPI GCANNNNNTGC 2 cut(s) 725, 992
BstC8I GCNNGC 5 cut(s) 24, 576, 726, 960, 997
BstDEI CTNAG 5 cut(s) 81, 536, 865, 902, 1038
BstENI CCTNNNNNAGG 1 cut(s) 451
BstF5I GGATG 3 cut(s) 221, 322, 986
BstH2I RGCGCY 1 cut(s) 1045
BstHHI GCGC 2 cut(s) 40, 1044
BstKTI GATC 6 cut(s) 439, 475, 535, 589, 613, 945
BstMAI GTCTC 2 cut(s) 4, 658
BstMBI GATC 6 cut(s) 436, 472, 532, 586, 610, 942
BstMWI GCNNNNNNNGC 5 cut(s) 23, 413, 725, 971, 992
BstNI CCWGG 3 cut(s) 226, 290, 1017
BstNSI RCATGY 2 cut(s) 728, 962
BstSCI CCNGG 3 cut(s) 224, 288, 1015
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 5 cut(s) 196, 661, 856, 879, 974
BstV2I GAAGAC 3 cut(s) 162, 514, 920
BstX2I RGATCY 2 cut(s) 472, 942
BstYI RGATCY 2 cut(s) 472, 942
BsuRI GGCC 4 cut(s) 97, 305, 529, 922
BtsCI GGATG 3 cut(s) 221, 322, 986
BtsI GCAGTG 2 cut(s) 189, 726
BtsIMutI CAGTG 7 cut(s) 138, 189, 409, 676, 726, 729, 777
Cac8I GCNNGC 5 cut(s) 24, 576, 726, 960, 997
CfoI GCGC 2 cut(s) 40, 1044
Cfr13I GGNCC 4 cut(s) 235, 456, 624, 856
CseI GACGC 1 cut(s) 393
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviAII CATG 9 cut(s) 178, 313, 431, 497, 614, 725, 830, 848, 959
DdeI CTNAG 5 cut(s) 81, 536, 865, 902, 1038
DpnI GATC 6 cut(s) 438, 474, 534, 588, 612, 944
DpnII GATC 6 cut(s) 436, 472, 532, 586, 610, 942
EaeI YGGCCR 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 917
Eco147I AGGCCT 2 cut(s) 529, 922
Eco47I GGWCC 4 cut(s) 235, 456, 624, 856
Eco47III AGCGCT 1 cut(s) 1043
Eco57I CTGAAG 3 cut(s) 140, 378, 508
EcoNI CCTNNNNNAGG 1 cut(s) 451
EcoO109I RGGNCCY 2 cut(s) 235, 856
EcoRII CCWGG 3 cut(s) 224, 288, 1015
EcoT14I CCWWGG 1 cut(s) 917
ErhI CCWWGG 1 cut(s) 917
FaeI CATG 9 cut(s) 181, 316, 434, 500, 617, 728, 833, 851, 962
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 637
FatI CATG 9 cut(s) 177, 312, 430, 496, 613, 724, 829, 847, 958
FauI CCCGC 1 cut(s) 1004
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 785
Fnu4HI GCNGC 7 cut(s) 60, 210, 306, 675, 870, 893, 963
FokI GGATG 3 cut(s) 208, 329, 973
Fsp4HI GCNGC 7 cut(s) 60, 210, 306, 675, 870, 893, 963
FspBI CTAG 4 cut(s) 14, 633, 918, 1045
GlaI GCGC 2 cut(s) 39, 1043
GluI GCNGC 7 cut(s) 60, 210, 306, 675, 870, 893, 963
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 2 cut(s) 753, 959
HaeII RGCGCY 1 cut(s) 1045
HaeIII GGCC 4 cut(s) 97, 305, 529, 922
HgaI GACGC 1 cut(s) 393
HhaI GCGC 2 cut(s) 40, 1044
Hin1I GRCGYC 2 cut(s) 5, 91
Hin1II CATG 9 cut(s) 181, 316, 434, 500, 617, 728, 833, 851, 962
Hin6I GCGC 2 cut(s) 38, 1042
HinP1I GCGC 2 cut(s) 38, 1042
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 4 cut(s) 332, 443, 491, 968
HphI GGTGA 3 cut(s) 58, 496, 818
Hpy166II GTNNAC 4 cut(s) 322, 459, 786, 1006
Hpy188I TCNGA 3 cut(s) 154, 358, 380
Hpy188III TCNNGA 6 cut(s) 9, 104, 440, 560, 806, 938
Hpy8I GTNNAC 4 cut(s) 322, 459, 786, 1006
Hpy99I CGWCG 4 cut(s) 10, 59, 93, 96
HpyAV CCTTC 5 cut(s) 287, 358, 654, 692, 869
HpyCH4III ACNGT 5 cut(s) 404, 520, 671, 733, 790
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 8 cut(s) 26, 434, 574, 695, 719, 724, 962, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 413, 725, 971, 992
HpyF3I CTNAG 5 cut(s) 81, 536, 865, 902, 1038
HpySE526I ACGT 1 cut(s) 91
Hsp92I GRCGYC 2 cut(s) 5, 91
Hsp92II CATG 9 cut(s) 181, 316, 434, 500, 617, 728, 833, 851, 962
HspAI GCGC 2 cut(s) 38, 1042
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 6 cut(s) 436, 472, 532, 586, 610, 942
Lsp1109I GCAGC 5 cut(s) 196, 661, 856, 879, 974
LweI GCATC 1 cut(s) 995
MaeI CTAG 4 cut(s) 14, 633, 918, 1045
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 2 cut(s) 113, 806
MalI GATC 6 cut(s) 438, 474, 534, 588, 612, 944
MbiI CCGCTC 1 cut(s) 999
MboI GATC 6 cut(s) 436, 472, 532, 586, 610, 942
MboII GAAGA 5 cut(s) 57, 167, 371, 514, 920
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 2 cut(s) 472, 942
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 3 cut(s) 479, 541, 876
MlyI GAGTC 2 cut(s) 326, 485
MmeI TCCRAC 2 cut(s) 265, 772
MnlI CCTC 9 cut(s) 88, 108, 176, 248, 374, 389, 771, 813, 847
MseI TTAA 2 cut(s) 477, 687
MslI CAYNNNNRTG 2 cut(s) 176, 957
MspA1I CMGCKG 3 cut(s) 869, 892, 965
MspR9I CCNGG 3 cut(s) 226, 290, 1017
MunI CAATTG 1 cut(s) 876
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 3 cut(s) 226, 290, 1017
MwoI GCNNNNNNNGC 5 cut(s) 23, 413, 725, 971, 992
NdeII GATC 6 cut(s) 436, 472, 532, 586, 610, 942
NlaIII CATG 9 cut(s) 181, 316, 434, 500, 617, 728, 833, 851, 962
NlaIV GGNNCC 2 cut(s) 236, 625
NmuCI GTSAC 1 cut(s) 806
NspI RCATGY 2 cut(s) 728, 962
PaeI GCATGC 2 cut(s) 728, 962
PceI AGGCCT 2 cut(s) 529, 922
PcsI WCGNNNNNNNCGW 1 cut(s) 97
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 443, 968
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 7 cut(s) 61, 211, 307, 676, 871, 894, 964
PleI GAGTC 2 cut(s) 326, 485
PpsI GAGTC 2 cut(s) 326, 485
PpuMI RGGWCCY 2 cut(s) 235, 856
Psp5II RGGWCCY 2 cut(s) 235, 856
Psp6I CCWGG 3 cut(s) 224, 288, 1015
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 3 cut(s) 224, 288, 1015
PspN4I GGNNCC 2 cut(s) 236, 625
PspPI GGNCC 4 cut(s) 235, 456, 624, 856
PspPPI RGGWCCY 2 cut(s) 235, 856
PsuI RGATCY 2 cut(s) 472, 942
PvuII CAGCTG 3 cut(s) 869, 892, 965
RseI CAYNNNNRTG 2 cut(s) 176, 957
SaqAI TTAA 2 cut(s) 477, 687
SatI GCNGC 7 cut(s) 60, 210, 306, 675, 870, 893, 963
Sau3AI GATC 6 cut(s) 436, 472, 532, 586, 610, 942
Sau96I GGNCC 4 cut(s) 235, 456, 624, 856
SchI GAGTC 2 cut(s) 326, 485
ScrFI CCNGG 3 cut(s) 226, 290, 1017
SduI GDGCHC 1 cut(s) 203
SfaNI GCATC 1 cut(s) 995
SfcI CTRYAG 1 cut(s) 424
SinI GGWCC 4 cut(s) 235, 456, 624, 856
SmiMI CAYNNNNRTG 2 cut(s) 176, 957
SpeI ACTAGT 1 cut(s) 632
SphI GCATGC 2 cut(s) 728, 962
Sse9I AATT 3 cut(s) 479, 541, 876
SseBI AGGCCT 2 cut(s) 529, 922
SsiI CCGC 3 cut(s) 60, 306, 997
SspI AATATT 1 cut(s) 709
SspMI CTAG 4 cut(s) 14, 633, 918, 1045
StuI AGGCCT 2 cut(s) 529, 922
StyD4I CCNGG 3 cut(s) 224, 288, 1015
StyI CCWWGG 1 cut(s) 917
TaaI ACNGT 5 cut(s) 404, 520, 671, 733, 790
TaiI ACGT 1 cut(s) 94
TaqI TCGA 6 cut(s) 8, 274, 559, 641, 712, 776
TasI AATT 3 cut(s) 479, 541, 876
TauI GCSGC 2 cut(s) 62, 308
TfiI GAWTC 2 cut(s) 443, 968
Tru1I TTAA 2 cut(s) 477, 687
Tru9I TTAA 2 cut(s) 477, 687
TscAI CASTG 7 cut(s) 145, 196, 409, 676, 726, 736, 777
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 5 cut(s) 209, 674, 869, 892, 962
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 2 cut(s) 744, 753
TspRI CASTG 7 cut(s) 145, 196, 409, 676, 726, 736, 777
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 4 cut(s) 235, 456, 624, 856
XagI CCTNNNNNAGG 1 cut(s) 451
XceI RCATGY 2 cut(s) 728, 962
XcmI CCANNNNNNNNNTGG 1 cut(s) 1013
XmaJI CCTAGG 1 cut(s) 917
XmiI GTMKAC 1 cut(s) 785
XspI CTAG 4 cut(s) 14, 633, 918, 1045
ZraI GACGTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.