Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Forward (+)

1463194 .. 1464182

Gene Structure 989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGATCGTGATGAACTATATGATGTTGGTGGAGTCTTCATTGGTGTTCTTGCCATAATCCTACTGATCATTGTAGTTTCTTACTGCCATCGCCGGCAATCCCCGGTGGATCCTTCAGATCATGATGATGAGCCATCTGCAACAATTGAACGAGGCCTTGATGAAGCTACAATATGTTCATATCCAAAGCTGCTTTACTCAGAAGTCAAGCTGCATATGTTTGATTCAGTTTCATGTACTTCTCCTTCTTGCTGCTGCATATGTTTAGCTGAGTTTGAAGACAAGGATGTATTGAGATCTGTCCCTAATTGTGGCCATTTCTTTCACCAAATCTGTGTGGACAAATGGTTGCTGCTTCACCCCACATGCCCAGTTTGCAGAAACTCACTCGTCGATCCATTGCCTTCTGTTGGTTCTGTAGCTGAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

144

Amino Acids

15.87

Weight (kDa)

4.7

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	84 - 127	2e-12	Ring finger domain
zf-rbx1	PF12678	84 - 127	9.9e-06	RING-H2 zinc finger domain
zf-RING_11	PF17123	85 - 113	5.1e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	12, 104, 117, 389
AcoI	YGGCCR	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	311, 410
AgsI	TTSAA	2 cut(s)	149, 278
AluBI	AGCT	5 cut(s)	167, 190, 211, 269, 422
AluI	AGCT	5 cut(s)	167, 190, 211, 269, 422
AlwI	GGATC	4 cut(s)	12, 104, 117, 389
AoxI	GGCC	2 cut(s)	154, 313
ApeKI	GCWGC	5 cut(s)	190, 211, 252, 255, 352
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	317, 350
BalI	TGGCCA	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	229, 261
BbsI	GAAGAC	2 cut(s)	28, 285
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	5 cut(s)	177, 198, 239, 242, 339
BccI	CCATC	2 cut(s)	96, 142
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	417
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	5 cut(s)	191, 212, 253, 256, 353
BlsI	GCNGC	5 cut(s)	192, 213, 254, 257, 354
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	2 cut(s)	28, 285
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 410
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	2 cut(s)	311, 410
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	213, 261, 414
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	5 cut(s)	177, 198, 239, 242, 339
BshFI	GGCC	2 cut(s)	156, 315
BsiSI	CCGG	2 cut(s)	94, 104
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	2 cut(s)	311, 410
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	156, 315
Bsp143I	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
BspANI	GGCC	2 cut(s)	156, 315
BspCNI	CTCAG	3 cut(s)	212, 262, 415
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	4 cut(s)	12, 104, 117, 389
BsrDI	GCAATG	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	199, 270, 423
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	6 cut(s)	7, 69, 112, 121, 299, 397
BstMBI	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	5 cut(s)	177, 198, 239, 242, 339
BstV2I	GAAGAC	2 cut(s)	28, 285
BstX2I	RGATCY	2 cut(s)	109, 296
BstYI	RGATCY	2 cut(s)	109, 296
BsuRI	GGCC	2 cut(s)	156, 315
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	3 cut(s)	122, 234, 366
CviJI	RGCY	8 cut(s)	133, 156, 167, 190, 211, 269, 315, 422
CviKI_1	RGCY	8 cut(s)	133, 156, 167, 190, 211, 269, 315, 422
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	3 cut(s)	199, 270, 423
DpnI	GATC	6 cut(s)	6, 68, 111, 120, 298, 396
DpnII	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
EaeI	YGGCCR	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	99
FaeI	CATG	3 cut(s)	125, 237, 369
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	3 cut(s)	121, 233, 365
FauNDI	CATATG	2 cut(s)	216, 260
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	5 cut(s)	191, 212, 253, 256, 353
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	5 cut(s)	191, 212, 253, 256, 353
GluI	GCNGC	5 cut(s)	191, 212, 253, 256, 353
HaeIII	GGCC	2 cut(s)	156, 315
HapII	CCGG	2 cut(s)	94, 104
Hin1II	CATG	3 cut(s)	125, 237, 369
HinfI	GANTC	2 cut(s)	33, 224
HpaII	CCGG	2 cut(s)	94, 104
HphI	GGTGA	2 cut(s)	317, 350
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	118, 202
Hpy188III	TCNNGA	2 cut(s)	8, 122
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	123, 255, 414
HpyCH4V	TGCA	4 cut(s)	140, 214, 258, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	3 cut(s)	199, 270, 423
Hsp92II	CATG	3 cut(s)	125, 237, 369
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
LpnPI	CCDG	3 cut(s)	107, 117, 384
Lsp1109I	GCAGC	5 cut(s)	177, 198, 239, 242, 339
MalI	GATC	6 cut(s)	6, 68, 111, 120, 298, 396
MboI	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
MboII	GAAGA	2 cut(s)	28, 290
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	2 cut(s)	109, 296
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	2 cut(s)	144, 307
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	146, 418
Mox20I	TGGCCA	1 cut(s)	315
MroNI	GCCGGC	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	2 cut(s)	94, 104
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	375
NaeI	GCCGGC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	104
NdeI	CATATG	2 cut(s)	216, 260
NdeII	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	3 cut(s)	125, 237, 369
NlaIV	GGNNCC	1 cut(s)	111
NspI	RCATGY	1 cut(s)	369
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	156
PdiI	GCCGGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	192, 213, 254, 257, 354
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	111
PsuI	RGATCY	2 cut(s)	109, 296
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	5 cut(s)	191, 212, 253, 256, 353
Sau3AI	GATC	6 cut(s)	4, 66, 109, 118, 296, 394
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	169, 192, 213, 271, 424, 429
SfcI	CTRYAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	144, 307
SseBI	AGGCCT	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	102
TaqI	TCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	144, 307
TatI	WGTACW	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	224
TseI	GCWGC	5 cut(s)	190, 211, 252, 255, 352
TspDTI	ATGAA	5 cut(s)	27, 28, 168, 177, 222
XceI	RCATGY	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.