Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Reverse (-)

24002888 .. 24003316

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATAACGACAGTGACGAAGTATATGATGCCGTTGGAGTTTGCTTTGGCGTCTTTGCCATAATCGTACTCATATTCTGGATCTCTTTCCGCAACCGGAGACAATCTTCGGTCGACCTGTCGGAGCACTACGAGAGCTCCCCAACCATCGAACAAGGCCTTGATGAAGCAACAATATGTAGCTACCCGAAACTGCTCTACTCTGAGGCCAAAGTGCAAATGGAAGGTTCAGTTTCAGCACCTTCTTGCTGTTGTATATGCTTGGCAGATTATGAAGACAAAGATATATTGAGAGGCGTGCCTATCTGCGGCCATTATTTTCATCAAATTTGTGTGGACAAATGGTTGCAGCTCCACCCAACTTGCCCGATTTGCAGAAACTCGCCACTTGATCCGTCTGTGTGCTTGATGATTACTTCTGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

143

Amino Acids

15.92

Weight (kDa)

4.49

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	82 - 126	2.4e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	83 - 126	4.2e-12	Ring finger domain
zf-RING_11	PF17123	84 - 112	3.8e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	91, 309
AclWI	GGATC	2 cut(s)	89, 386
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	308
AluBI	AGCT	3 cut(s)	138, 183, 352
AluI	AGCT	3 cut(s)	138, 183, 352
Alw21I	GWGCWC	2 cut(s)	129, 140
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	89, 386
AoxI	GGCC	3 cut(s)	157, 207, 310
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	129, 140
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	310, 350
BlsI	GCNGC	2 cut(s)	311, 351
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	159, 209, 312
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	129, 140
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	159, 209, 312
Bsp1286I	GDGCHC	2 cut(s)	129, 140
Bsp143I	GATC	2 cut(s)	81, 391
BspACI	CCGC	2 cut(s)	91, 309
BspANI	GGCC	3 cut(s)	159, 209, 312
BspCNI	CTCAG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	89, 386
BssMI	GATC	2 cut(s)	81, 391
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	84, 394
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	81, 391
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	159, 209, 312
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	299
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviJI	RGCY	6 cut(s)	138, 159, 183, 209, 312, 352
CviKI_1	RGCY	6 cut(s)	138, 159, 183, 209, 312, 352
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	83, 393
DpnII	GATC	2 cut(s)	81, 391
EaeI	YGGCCR	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	140
FaiI	YATR	9 cut(s)	25, 27, 62, 74, 178, 257, 259, 273, 287
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	310, 350
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	310, 350
GluI	GCNGC	2 cut(s)	310, 350
HaeIII	GGCC	3 cut(s)	159, 209, 312
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	115, 337
Hpy188I	TCNGA	3 cut(s)	124, 205, 421
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	115, 337
HpyAV	CCTTC	2 cut(s)	218, 252
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	217, 349, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	81, 391
LmnI	GCTCC	3 cut(s)	124, 143, 357
LpnPI	CCDG	3 cut(s)	64, 110, 131
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	83, 393
MboI	GATC	2 cut(s)	81, 391
MboII	GAAGA	2 cut(s)	99, 287
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	129, 140
MluCI	AATT	1 cut(s)	327
MmeI	TCCRAC	2 cut(s)	16, 102
MnlI	CCTC	2 cut(s)	199, 287
MspI	CCGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	372
NdeII	GATC	2 cut(s)	81, 391
NmuCI	GTSAC	1 cut(s)	14
PceI	AGGCCT	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	311, 351
Psp124BI	GAGCTC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	2 cut(s)	310, 350
Sau3AI	GATC	2 cut(s)	81, 391
SduI	GDGCHC	2 cut(s)	129, 140
SetI	ASST	6 cut(s)	120, 140, 185, 229, 244, 354
SfaNI	GCATC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	327
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	2 cut(s)	91, 309
SstI	GAGCTC	1 cut(s)	140
StuI	AGGCCT	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	2 cut(s)	114, 150
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	1 cut(s)	327
TauI	GCSGC	1 cut(s)	312
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	180, 288, 311
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.