Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Forward (+)

984205 .. 984633

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1010800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCAGTCGACGCTGACGAAATATATGATGCCGCTGGAGTTTGCATTGGCGTCATCGCCATAATCATACTCATATACTGGATCTCTTACTGCAAGCGGAGACAATCTCCGGTTGACCCGTCGGACCATGACGAGGGCTCCGCAACCATAGAACAAGGGCTTGATGAAGCTACAATATGCAGCTACCCGAAACTGCCCTACTCCGAGGCCAAGCTTCAAATGGTTGGTTCAGTTTCAGCGCCTTCTTGCTGTTGCATATGCTTGGCAGATTTTGATGACACAGATACATTGAGATGTGTGCCTAACTGTGGCCATTTTTTTCACCAAATTTGTGTGGATAAATGGTTGCAGCTCCACCCTTCTTGCCCGATTTGCAGAACGTCGCCTCTGGATCCATCTGTGGGATCGATGAATACTTCTGAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

143

Amino Acids

15.52

Weight (kDa)

4.42

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	83 - 126	5.2e-12	Ring finger domain
zf-RING_11	PF17123	84 - 112	4.4e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	3 cut(s)	33, 97, 141
AclWI	GGATC	4 cut(s)	89, 386, 399, 412
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	3 cut(s)	133, 308, 401
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	4 cut(s)	170, 183, 214, 352
AluI	AGCT	4 cut(s)	170, 183, 214, 352
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	4 cut(s)	89, 386, 399, 412
AoxI	GGCC	2 cut(s)	207, 310
ApeKI	GCWGC	2 cut(s)	180, 349
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	192, 361
BccI	CCATC	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	3 cut(s)	33, 181, 350
BlsI	GCNGC	3 cut(s)	34, 182, 351
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	139, 393
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
BpmI	CTGGAG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 308, 401
Bse1I	ACTGG	2 cut(s)	5, 83
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	133, 308, 401
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	5, 83
BseXI	GCAGC	2 cut(s)	192, 361
BshFI	GGCC	2 cut(s)	209, 312
BshVI	ATCGAT	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	133, 308, 401
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	209, 312
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	81, 391, 404
BspACI	CCGC	3 cut(s)	33, 97, 141
BspANI	GGCC	2 cut(s)	209, 312
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	139, 393
BspPI	GGATC	4 cut(s)	89, 386, 399, 412
BsrI	ACTGG	2 cut(s)	5, 83
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	81, 391, 404
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	420
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	3 cut(s)	84, 394, 407
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	81, 391, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	192, 361
BstX2I	RGATCY	2 cut(s)	81, 391
BstYI	RGATCY	2 cut(s)	81, 391
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	209, 312
BsuTUI	ATCGAT	1 cut(s)	407
BtgZI	GCGATG	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	407
CseI	GACGC	2 cut(s)	20, 40
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	8 cut(s)	138, 160, 170, 183, 209, 214, 312, 352
CviKI_1	RGCY	8 cut(s)	138, 160, 170, 183, 209, 214, 312, 352
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	3 cut(s)	83, 393, 406
DpnII	GATC	3 cut(s)	81, 391, 404
EaeI	YGGCCR	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	140
FaeI	CATG	1 cut(s)	131
FatI	CATG	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	257
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	33, 181, 350
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	33, 181, 350
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	33, 181, 350
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	209, 312
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	2 cut(s)	20, 40
HhaI	GCGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	2 cut(s)	10, 115
HindII	GTYRAC	2 cut(s)	10, 115
HindIII	AAGCTT	1 cut(s)	212
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	10, 115
Hpy188I	TCNGA	3 cut(s)	124, 205, 421
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	2 cut(s)	10, 115
Hpy99I	CGWCG	3 cut(s)	14, 124, 385
HpyAV	CCTTC	2 cut(s)	252, 369
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	6 cut(s)	45, 93, 180, 255, 349, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	81, 391, 404
LmnI	GCTCC	2 cut(s)	143, 357
LpnPI	CCDG	5 cut(s)	18, 21, 64, 123, 374
Lsp1109I	GCAGC	2 cut(s)	192, 361
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	1 cut(s)	380
MalI	GATC	3 cut(s)	83, 393, 406
MboI	GATC	3 cut(s)	81, 391, 404
MflI	RGATCY	2 cut(s)	81, 391
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	1 cut(s)	327
MluNI	TGGCCA	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	127, 199, 396, 415
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	372
NdeI	CATATG	1 cut(s)	257
NdeII	GATC	3 cut(s)	81, 391, 404
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	139, 393
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	34, 182, 351
PspN4I	GGNNCC	2 cut(s)	139, 393
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	81, 391
RseI	CAYNNNNRTG	1 cut(s)	292
SalI	GTCGAC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	33, 181, 350
Sau3AI	GATC	3 cut(s)	81, 391, 404
Sau96I	GGNCC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	6 cut(s)	172, 185, 216, 354, 383, 426
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	292
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	3 cut(s)	33, 97, 141
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	2 cut(s)	9, 407
TasI	AATT	1 cut(s)	327
TauI	GCSGC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	180, 349
TspDTI	ATGAA	2 cut(s)	180, 425
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.