Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Reverse (-)

66216053 .. 66216481

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATCGGGATGAACTATATGATGCTGGTGGAGTCTTCATTGGTGTTCTTGCCATAATCGTACTGATCATTGTAATTTCTTACTGTCATCGCCGGCAATCCCTGGTCAATCCGTCAGATCATGATGAGTCATCTGCAACAACTGAACAAGGCCTTGATGAAGCTACAATATGTGCATATCCAAAGCTGCTTTACTCAGAAGCCAAGTTGCACATGTTTAATTCAATTTCATGTACTTCTCCTTCTTGTTGCAGCATATGCTTGGCTGATTTTGAAGACAATGATGTACTGAGATCTGTCCCTAATTGTGGCCATTTCTTTCACCAAATGTGCGTGGATAAATGGTTGCTGCTTCACCCCACATGCCCAATTTGCAGAAACTCACTTGTCGATCCATCAACTTCTGTTGGTTCTGTAGCTGAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

143

Amino Acids

15.63

Weight (kDa)

4.74

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	82 - 126	1.7e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	83 - 126	2.6e-13	Ring finger domain
zf-RING_11	PF17123	84 - 112	6.1e-09	RING-like zinc finger
zf-C3HC4	PF00097	84 - 125	2.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	84 - 125	8e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	12, 386
AcoI	YGGCCR	1 cut(s)	310
AfaI	GTAC	3 cut(s)	63, 235, 288
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	225, 275
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	164, 187, 419
AluI	AGCT	3 cut(s)	164, 187, 419
AlwI	GGATC	2 cut(s)	12, 386
AoxI	GGCC	2 cut(s)	151, 310
ApeKI	GCWGC	3 cut(s)	187, 252, 349
AsuHPI	GGTGA	2 cut(s)	314, 347
BalI	TGGCCA	1 cut(s)	312
BarI	GAAGNNNNNNTAC	2 cut(s)	226, 258
BbsI	GAAGAC	2 cut(s)	28, 282
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	174, 264, 336
BccI	CCATC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	66
BfaI	CTAG	1 cut(s)	427
BfmI	CTRYAG	1 cut(s)	414
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	3 cut(s)	188, 253, 350
BlsI	GCNGC	3 cut(s)	189, 254, 351
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	28, 282
Bpu10I	CCTNAGC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	3 cut(s)	210, 281, 411
BseXI	GCAGC	3 cut(s)	174, 264, 336
BshFI	GGCC	2 cut(s)	153, 312
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	153, 312
Bsp143I	GATC	5 cut(s)	4, 66, 118, 293, 391
BspANI	GGCC	2 cut(s)	153, 312
BspCNI	CTCAG	3 cut(s)	209, 282, 412
BspHI	TCATGA	1 cut(s)	121
BspPI	GGATC	2 cut(s)	12, 386
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	5 cut(s)	4, 66, 118, 293, 391
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	196, 290, 420
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	5 cut(s)	7, 69, 121, 296, 394
BstMBI	GATC	5 cut(s)	4, 66, 118, 293, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 372
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	217, 366
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	174, 264, 336
BstV2I	GAAGAC	2 cut(s)	28, 282
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	153, 312
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	62, 234, 287
CviAII	CATG	4 cut(s)	122, 214, 231, 363
CviJI	RGCY	7 cut(s)	153, 164, 187, 203, 266, 312, 419
CviKI_1	RGCY	7 cut(s)	153, 164, 187, 203, 266, 312, 419
CviQI	GTAC	3 cut(s)	62, 234, 287
DdeI	CTNAG	3 cut(s)	196, 290, 420
DpnI	GATC	5 cut(s)	6, 68, 120, 295, 393
DpnII	GATC	5 cut(s)	4, 66, 118, 293, 391
EaeI	YGGCCR	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	125, 217, 234, 366
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	4 cut(s)	121, 213, 230, 362
FauNDI	CATATG	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	188, 253, 350
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	188, 253, 350
FspBI	CTAG	1 cut(s)	427
GluI	GCNGC	3 cut(s)	188, 253, 350
HaeIII	GGCC	2 cut(s)	153, 312
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	4 cut(s)	125, 217, 234, 366
HinfI	GANTC	2 cut(s)	33, 128
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	314, 347
Hpy188I	TCNGA	2 cut(s)	118, 199
Hpy188III	TCNNGA	2 cut(s)	8, 122
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	5 cut(s)	137, 176, 211, 252, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 372
HpyF3I	CTNAG	3 cut(s)	196, 290, 420
Hsp92II	CATG	4 cut(s)	125, 217, 234, 366
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	4, 66, 118, 293, 391
LpnPI	CCDG	4 cut(s)	12, 89, 107, 116
Lsp1109I	GCAGC	3 cut(s)	174, 264, 336
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	427
MalI	GATC	5 cut(s)	6, 68, 120, 295, 393
MboI	GATC	5 cut(s)	4, 66, 118, 293, 391
MboII	GAAGA	2 cut(s)	28, 287
MflI	RGATCY	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	5 cut(s)	75, 220, 225, 304, 369
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	42, 137
MnlI	CCTC	1 cut(s)	415
Mox20I	TGGCCA	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	258, 372
NaeI	GCCGGC	1 cut(s)	95
NdeI	CATATG	1 cut(s)	257
NdeII	GATC	5 cut(s)	4, 66, 118, 293, 391
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	4 cut(s)	125, 217, 234, 366
NspI	RCATGY	2 cut(s)	217, 366
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	153
PciI	ACATGT	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	189, 254, 351
PleI	GAGTC	2 cut(s)	41, 136
PpsI	GAGTC	2 cut(s)	41, 136
PscI	ACATGT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	3 cut(s)	63, 235, 288
RsaNI	GTAC	3 cut(s)	62, 234, 287
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	3 cut(s)	188, 253, 350
Sau3AI	GATC	5 cut(s)	4, 66, 118, 293, 391
SchI	GAGTC	2 cut(s)	42, 137
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	4 cut(s)	166, 189, 421, 426
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	414
Sse9I	AATT	5 cut(s)	75, 220, 225, 304, 369
SseBI	AGGCCT	1 cut(s)	153
SspMI	CTAG	1 cut(s)	427
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	390
TasI	AATT	5 cut(s)	75, 220, 225, 304, 369
TatI	WGTACW	2 cut(s)	233, 286
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TseI	GCWGC	3 cut(s)	187, 252, 349
TspDTI	ATGAA	4 cut(s)	27, 28, 174, 219
TspGWI	ACGGA	1 cut(s)	102
XceI	RCATGY	2 cut(s)	217, 366
XspI	CTAG	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.