Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Reverse (-)

66379652 .. 66380917

Gene Structure 1266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATCAGGATGAACTATATGATGCTGGTGGAGTCTTCATTGGTGTTCTTGCCATAATCATACTGATCATTGTAATTTCTTACTGCCATCGCCGGCAATCCCTGGTCGATCCGTCAGATCATGATGAGTCATCTGCAACAATTGAACAAGGCCTTGATGAAGCTACAATATGTGCATATCCGAAGCTGCTTTACTCAGAAGCCAAGCTGCACATATTTGATTCAATTTCATGTACCCCTCCTTCTTGTTGCAGCATATGCTTGGCTGATTTTGAAGACAATGATGTATTGAGATCTGTCCCTAATTGTGGCCATTTCTTTCACCAAGTGTGCGTGGACAAATGGTTGCTCCTTCACCCCACATGCCCAGTTTGCAGGAACTCACTTGTTGATCCATTGACTTCTGTTGGTTCTGTAGCAGAGGATTCAATACACATGTATCTGATGTGCATCGGCTATCAAGGCCATGATGGAACAAATTCCATATCTCTTGTTCTTGATAATTGGATTGATCTAGTGGGCAGCAATAACGGTACGTTGCTCAAGTTCGTGGGCCCGGGCTCTCGTCCAGATCTCCCCTACATTTTCTCCGCCATCGGTATCGCCATTGCTATTGGCGTCTCTGTCCTCGGCATTGCTTGGGGAATTTATAACCATATATATTATTGGGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

226

Amino Acids

24.63

Weight (kDa)

4.57

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	83 - 126	5.6e-13	Ring finger domain
zf-rbx1	PF12678	83 - 126	5.6e-06	RING-H2 zinc finger domain
zf-RING_11	PF17123	84 - 112	1.2e-08	RING-like zinc finger
zf-C3HC4	PF00097	84 - 125	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	84 - 125	6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	3 cut(s)	12, 104, 386
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	478, 645
AcyI	GRCGYC	1 cut(s)	618
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	2 cut(s)	235, 535
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	146, 225, 275, 429
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	164, 187, 208
AluI	AGCT	3 cut(s)	164, 187, 208
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	12, 104, 386
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	4 cut(s)	151, 310, 463, 553
ApaI	GGGCCC	1 cut(s)	557
ApeKI	GCWGC	4 cut(s)	187, 208, 252, 522
ApoI	RAATTY	2 cut(s)	478, 645
Asp700I	GAANNNNTTC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	553, 554
AsuC2I	CCSGG	2 cut(s)	557, 558
AsuHPI	GGTGA	2 cut(s)	314, 347
AvaI	CYCGRG	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	557, 563
BarI	GAAGNNNNNNTAC	4 cut(s)	176, 208, 226, 258
BbsI	GAAGAC	2 cut(s)	28, 282
BbvI	GCAGC	4 cut(s)	174, 195, 264, 534
BccI	CCATC	3 cut(s)	96, 464, 602
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	2 cut(s)	557, 558
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	414
BglII	AGATCT	2 cut(s)	293, 571
BisI	GCNGC	4 cut(s)	188, 209, 253, 523
BlsI	GCNGC	4 cut(s)	189, 210, 254, 524
Bme1390I	CCNGG	3 cut(s)	104, 557, 558
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	2 cut(s)	553, 554
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	104, 557, 558
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	13, 459
BmuI	ACTGGG	1 cut(s)	362
BpiI	GAAGAC	2 cut(s)	28, 282
BpuEI	CTTGAG	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	557, 558
BsaBI	GATNNNNATC	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	102, 556, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	2 cut(s)	606, 633
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	3 cut(s)	102, 556, 628
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	2 cut(s)	606, 633
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	4 cut(s)	174, 195, 264, 534
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	4 cut(s)	153, 312, 465, 555
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	94, 557
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	625
BsmBI	CGTCTC	1 cut(s)	625
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	153, 312, 465, 555
BsoBI	CYCGRG	1 cut(s)	556
Bsp120I	GGGCCC	1 cut(s)	553
Bsp1286I	GDGCHC	2 cut(s)	557, 563
Bsp143I	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	4 cut(s)	153, 312, 465, 555
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	3 cut(s)	12, 104, 386
BsrDI	GCAATG	2 cut(s)	606, 633
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	102, 556, 628
BssMI	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
BssNI	GRCGYC	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	618
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	8 cut(s)	7, 69, 112, 121, 296, 394, 514, 574
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 372, 462
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	366, 439
BstSCI	CCNGG	3 cut(s)	102, 555, 556
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	4 cut(s)	174, 195, 264, 534
BstV2I	GAAGAC	2 cut(s)	28, 282
BstX2I	RGATCY	2 cut(s)	293, 571
BstYI	RGATCY	2 cut(s)	293, 571
BsuRI	GGCC	4 cut(s)	153, 312, 465, 555
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	553, 554
Cfr9I	CCCGGG	1 cut(s)	556
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	2 cut(s)	234, 534
CviAII	CATG	5 cut(s)	122, 231, 363, 436, 467
CviQI	GTAC	2 cut(s)	234, 534
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	8 cut(s)	6, 68, 111, 120, 295, 393, 513, 573
DpnII	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	580
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	557, 563
Eco88I	CYCGRG	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	2 cut(s)	557, 563
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	5 cut(s)	125, 234, 366, 439, 470
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	121, 230, 362, 435, 466
FauNDI	CATATG	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	188, 209, 253, 523
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	2 cut(s)	557, 563
Fsp4HI	GCNGC	4 cut(s)	188, 209, 253, 523
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	4 cut(s)	188, 209, 253, 523
HaeIII	GGCC	4 cut(s)	153, 312, 465, 555
HapII	CCGG	2 cut(s)	94, 557
HgaI	GACGC	1 cut(s)	607
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	5 cut(s)	125, 234, 366, 439, 470
HinfI	GANTC	4 cut(s)	33, 128, 221, 425
HpaII	CCGG	2 cut(s)	94, 557
HphI	GGTGA	2 cut(s)	314, 347
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	118, 183, 199, 444
Hpy188III	TCNNGA	4 cut(s)	8, 122, 497, 569
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	252, 362
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	6 cut(s)	137, 176, 211, 252, 375, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 372, 462
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	536
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	5 cut(s)	125, 234, 366, 439, 470
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	8 cut(s)	12, 89, 107, 116, 361, 381, 570, 582
Lsp1109I	GCAGC	4 cut(s)	174, 195, 264, 534
LweI	GCATC	2 cut(s)	13, 459
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	536
MalI	GATC	8 cut(s)	6, 68, 111, 120, 295, 393, 513, 573
MboI	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
MboII	GAAGA	2 cut(s)	28, 287
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	2 cut(s)	293, 571
MhlI	GDGCHC	2 cut(s)	557, 563
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	7 cut(s)	75, 141, 225, 304, 478, 502, 645
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	42, 137
MnlI	CCTC	3 cut(s)	249, 415, 638
Mox20I	TGGCCA	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	676
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	2 cut(s)	94, 557
MspR9I	CCNGG	3 cut(s)	104, 557, 558
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	258, 372, 462
NaeI	GCCGGC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	557, 558
NdeI	CATATG	1 cut(s)	257
NdeII	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	5 cut(s)	125, 234, 366, 439, 470
NlaIV	GGNNCC	1 cut(s)	555
NmeAIII	GCCGAG	1 cut(s)	609
NspI	RCATGY	2 cut(s)	366, 439
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	153
PciI	ACATGT	1 cut(s)	435
PdiI	GCCGGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	221, 425
PkrI	GCNGC	4 cut(s)	189, 210, 254, 524
PleI	GAGTC	2 cut(s)	41, 136
PpsI	GAGTC	2 cut(s)	41, 136
PscI	ACATGT	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	555
PspOMI	GGGCCC	1 cut(s)	553
PspPI	GGNCC	2 cut(s)	553, 554
PsuI	RGATCY	2 cut(s)	293, 571
RsaI	GTAC	2 cut(s)	235, 535
RsaNI	GTAC	2 cut(s)	234, 534
SaqAI	TTAA	1 cut(s)	676
SatI	GCNGC	4 cut(s)	188, 209, 253, 523
Sau3AI	GATC	8 cut(s)	4, 66, 109, 118, 293, 391, 511, 571
Sau96I	GGNCC	2 cut(s)	553, 554
SchI	GAGTC	2 cut(s)	42, 137
ScrFI	CCNGG	3 cut(s)	104, 557, 558
SduI	GDGCHC	2 cut(s)	557, 563
SetI	ASST	4 cut(s)	166, 189, 210, 539
SfaNI	GCATC	2 cut(s)	13, 459
SfcI	CTRYAG	1 cut(s)	414
SmaI	CCCGGG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SrfI	GCCCGGGC	1 cut(s)	558
Sse9I	AATT	7 cut(s)	75, 141, 225, 304, 478, 502, 645
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	1 cut(s)	515
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	102, 555, 556
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	75, 141, 225, 304, 478, 502, 645
TfiI	GAWTC	2 cut(s)	221, 425
Tru1I	TTAA	1 cut(s)	676
Tru9I	TTAA	1 cut(s)	676
TseI	GCWGC	4 cut(s)	187, 208, 252, 522
TspDTI	ATGAA	4 cut(s)	27, 28, 174, 219
TspGWI	ACGGA	1 cut(s)	102
TspMI	CCCGGG	1 cut(s)	556
XapI	RAATTY	2 cut(s)	478, 645
XceI	RCATGY	2 cut(s)	366, 439
XmaI	CCCGGG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.