Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Forward (+)

2484366 .. 2508453

Gene Structure 24088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG015600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATCAGGATGAACTATATGATGCTGTTGGAGTCTTCATTGGTGTTCTTGCCATAATCATACTGATCATTGTAATTTCTTACTGCCATCGCCGGCAATCCCTGGTCGATCCGTCAGATCATGATGAGTCATCTGCAACAATTGAGCAAGGCCTTGATGAAGCTACAATATGTGCATATCCGAAGCTGCTTTACTCAGAAGCCAAGCTGCACATGTTTGATTCAATTTCATGTACCCCTCCTTCTTGTTGCAGCATATGCTTGGCTGATTTTGAAGACAATGATGTATTGAGATGTGTCCCTAATTGTGGCCATTTCTTTCACCAAGTGTGCGTGGACAAATGGTTGCTGCTTCACCCCACATGCCCAGTTTGCAGGAGCTCACTTGTTGATTCATCGACTTCTGTTGGTTCTGTAGCAGAGGTGTCGAGAGGATGGGACAAACTGTTTGTGTCCATTGTGTCTGTGGAAACTGGGAAGCCGATTGCCAAGTCATGTAAACGGGTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

170

Amino Acids

18.68

Weight (kDa)

4.95

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	83 - 126	2.2e-12	Ring finger domain
zf-RING_11	PF17123	84 - 112	2.4e-08	RING-like zinc finger
zf-C3HC4	PF00097	84 - 125	3.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	12, 104
AcoI	YGGCCR	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	2 cut(s)	225, 275
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	164, 187, 208, 381
AluI	AGCT	4 cut(s)	164, 187, 208, 381
Alw21I	GWGCWC	1 cut(s)	383
AlwI	GGATC	2 cut(s)	12, 104
AoxI	GGCC	2 cut(s)	151, 310
ApeKI	GCWGC	4 cut(s)	187, 208, 252, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AsuHPI	GGTGA	2 cut(s)	314, 347
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	4 cut(s)	176, 208, 226, 258
BbsI	GAAGAC	2 cut(s)	28, 282
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	4 cut(s)	174, 195, 264, 336
BccI	CCATC	2 cut(s)	96, 429
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	4 cut(s)	188, 209, 253, 350
BlsI	GCNGC	4 cut(s)	189, 210, 254, 351
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	2 cut(s)	362, 483
BmsI	GCATC	1 cut(s)	13
BmuI	ACTGGG	2 cut(s)	362, 483
BpiI	GAAGAC	2 cut(s)	28, 282
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	368, 478
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	16, 440
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	368, 478
BseXI	GCAGC	4 cut(s)	174, 195, 264, 336
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	153, 312
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	2 cut(s)	284, 452
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	284, 452
BsnI	GGCC	2 cut(s)	153, 312
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	4 cut(s)	4, 66, 109, 118
BspANI	GGCC	2 cut(s)	153, 312
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	121
BspPI	GGATC	2 cut(s)	12, 104
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	368, 478
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	4 cut(s)	4, 66, 109, 118
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	447
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	16, 440
BstKTI	GATC	4 cut(s)	7, 69, 112, 121
BstMBI	GATC	4 cut(s)	4, 66, 109, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 372
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	217, 366
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	4 cut(s)	174, 195, 264, 336
BstV2I	GAAGAC	2 cut(s)	28, 282
BsuRI	GGCC	2 cut(s)	153, 312
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	16, 440
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	5 cut(s)	122, 214, 231, 363, 495
CviJI	RGCY	9 cut(s)	153, 164, 187, 203, 208, 266, 312, 381, 481
CviKI_1	RGCY	9 cut(s)	153, 164, 187, 203, 208, 266, 312, 381, 481
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	4 cut(s)	6, 68, 111, 120
DpnII	GATC	4 cut(s)	4, 66, 109, 118
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	381
EcoICRI	GAGCTC	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	5 cut(s)	125, 217, 234, 366, 498
FaqI	GGGAC	2 cut(s)	284, 452
FatI	CATG	5 cut(s)	121, 213, 230, 362, 494
FauNDI	CATATG	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	188, 209, 253, 350
FokI	GGATG	2 cut(s)	23, 447
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	188, 209, 253, 350
GluI	GCNGC	4 cut(s)	188, 209, 253, 350
HaeIII	GGCC	2 cut(s)	153, 312
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	5 cut(s)	125, 217, 234, 366, 498
HinfI	GANTC	4 cut(s)	33, 128, 221, 392
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	2 cut(s)	314, 347
Hpy166II	GTNNAC	2 cut(s)	337, 500
Hpy188I	TCNGA	3 cut(s)	118, 183, 199
Hpy188III	TCNNGA	3 cut(s)	8, 122, 429
Hpy8I	GTNNAC	2 cut(s)	337, 500
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4V	TGCA	5 cut(s)	137, 176, 211, 252, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 372
HpyF3I	CTNAG	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	125, 217, 234, 366, 498
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	4, 66, 109, 118
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	6 cut(s)	89, 107, 116, 361, 381, 459
Lsp1109I	GCAGC	4 cut(s)	174, 195, 264, 336
LweI	GCATC	1 cut(s)	13
MalI	GATC	4 cut(s)	6, 68, 111, 120
MboI	GATC	4 cut(s)	4, 66, 109, 118
MboII	GAAGA	2 cut(s)	28, 287
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	4 cut(s)	75, 141, 225, 304
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	42, 137
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	249, 415, 425
Mox20I	TGGCCA	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	93
MscI	TGGCCA	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	258, 372
NaeI	GCCGGC	1 cut(s)	95
NdeI	CATATG	1 cut(s)	257
NdeII	GATC	4 cut(s)	4, 66, 109, 118
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	5 cut(s)	125, 217, 234, 366, 498
NspI	RCATGY	2 cut(s)	217, 366
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	153
PciI	ACATGT	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	221, 392
PkrI	GCNGC	4 cut(s)	189, 210, 254, 351
PleI	GAGTC	2 cut(s)	41, 136
PpsI	GAGTC	2 cut(s)	41, 136
PscI	ACATGT	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	383
SatI	GCNGC	4 cut(s)	188, 209, 253, 350
Sau3AI	GATC	4 cut(s)	4, 66, 109, 118
SchI	GAGTC	2 cut(s)	42, 137
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	5 cut(s)	166, 189, 210, 383, 426
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	414
Sse9I	AATT	4 cut(s)	75, 141, 225, 304
SseBI	AGGCCT	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	383
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	447
TaqI	TCGA	3 cut(s)	108, 398, 428
TasI	AATT	4 cut(s)	75, 141, 225, 304
TfiI	GAWTC	2 cut(s)	221, 392
TseI	GCWGC	4 cut(s)	187, 208, 252, 349
TspDTI	ATGAA	5 cut(s)	27, 28, 174, 219, 384
TspGWI	ACGGA	1 cut(s)	102
XceI	RCATGY	2 cut(s)	217, 366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.