Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Forward (+)

1187296 .. 1188187

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G013300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGACAGCGATGAAATATATGACGCTGCTGGAGTTGTCATTGGCGTCCTCGCCATAATCTTCCTCATAGTCTTGATCTCCTGCTGCAACCGAAGGCAATCTCCCGTTGACCCGTCTGACCACAACGAAAGCTCTGCAACAATCGAACAAGGCCTTGATGAAGCCACCATCTGCGGCTACCCGAAGCTACTTTACTCTGAGGCCAAGCTGCGAATGGTTGGCTCTGTTTCAGCTCCTTCCTGTTGTTGCATATGCTTGGCAGACTTTGAAGACAAAGACGTCTTGCGATCTGTCCCTAATTGTGGCCATTTCTTTCACCAAATTTGTGTAGACAAATGGCTGCAGCTTCATCCCACTTGCCCAATTTGCAGAAACTCGCCTCTGGATCCATCTGCAGTTTTGGTGACTTCTGTTGAGGTAGTTGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

144

Amino Acids

15.57

Weight (kDa)

4.56

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AatII	GACGTC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	2 cut(s)	380, 393
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	321
AcyI	GRCGYC	2 cut(s)	45, 279
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	5 cut(s)	132, 187, 208, 233, 346
AluI	AGCT	5 cut(s)	132, 187, 208, 233, 346
AlwI	GGATC	2 cut(s)	380, 393
AoxI	GGCC	3 cut(s)	151, 201, 304
ApeKI	GCWGC	5 cut(s)	26, 84, 208, 340, 343
ApoI	RAATTY	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	308, 415
BalI	TGGCCA	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	13, 71, 195, 327, 355
BccI	CCATC	2 cut(s)	176, 397
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BfmI	CTRYAG	2 cut(s)	341, 393
BisI	GCNGC	6 cut(s)	27, 85, 175, 209, 341, 344
BlsI	GCNGC	6 cut(s)	28, 86, 176, 210, 342, 345
BmiI	GGNNCC	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	51
BsaHI	GRCGYC	2 cut(s)	45, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	5 cut(s)	13, 71, 195, 327, 355
BshFI	GGCC	3 cut(s)	153, 203, 306
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	153, 203, 306
Bsp143I	GATC	3 cut(s)	75, 287, 385
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	3 cut(s)	153, 203, 306
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	387
BspMAI	CTGCAG	2 cut(s)	345, 397
BspPI	GGATC	2 cut(s)	380, 393
BssMI	GATC	3 cut(s)	75, 287, 385
BssNI	GRCGYC	2 cut(s)	45, 279
BstACI	GRCGYC	2 cut(s)	45, 279
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	3 cut(s)	78, 290, 388
BstMBI	GATC	3 cut(s)	75, 287, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	341, 393
BstV1I	GCAGC	5 cut(s)	13, 71, 195, 327, 355
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	153, 203, 306
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	349
CseI	GACGC	2 cut(s)	32, 34
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	77, 289, 387
DpnII	GATC	3 cut(s)	75, 287, 385
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	153
FaiI	YATR	7 cut(s)	19, 21, 56, 68, 251, 253, 430
FaqI	GGGAC	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	6 cut(s)	27, 85, 175, 209, 341, 344
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	6 cut(s)	27, 85, 175, 209, 341, 344
GluI	GCNGC	6 cut(s)	27, 85, 175, 209, 341, 344
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	153, 203, 306
HgaI	GACGC	2 cut(s)	32, 34
Hin1I	GRCGYC	2 cut(s)	45, 279
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HphI	GGTGA	2 cut(s)	308, 415
Hpy166II	GTNNAC	2 cut(s)	109, 331
Hpy188I	TCNGA	2 cut(s)	118, 199
Hpy188III	TCNNGA	2 cut(s)	73, 383
Hpy8I	GTNNAC	2 cut(s)	109, 331
HpyAV	CCTTC	2 cut(s)	87, 246
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	6 cut(s)	87, 137, 249, 343, 369, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	2 cut(s)	45, 279
Kzo9I	GATC	3 cut(s)	75, 287, 385
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	4 cut(s)	15, 94, 253, 368
Lsp1109I	GCAGC	5 cut(s)	13, 71, 195, 327, 355
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	77, 289, 387
MboI	GATC	3 cut(s)	75, 287, 385
MboII	GAAGA	2 cut(s)	52, 281
MflI	RGATCY	1 cut(s)	385
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	3 cut(s)	298, 321, 363
MluNI	TGGCCA	1 cut(s)	306
MnlI	CCTC	6 cut(s)	59, 74, 193, 390, 409, 418
Mox20I	TGGCCA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	3 cut(s)	75, 287, 385
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	153
PkrI	GCNGC	6 cut(s)	28, 86, 176, 210, 342, 345
PspN4I	GGNNCC	1 cut(s)	387
PstI	CTGCAG	2 cut(s)	345, 397
PsuI	RGATCY	1 cut(s)	385
SatI	GCNGC	6 cut(s)	27, 85, 175, 209, 341, 344
Sau3AI	GATC	3 cut(s)	75, 287, 385
SetI	ASST	8 cut(s)	134, 189, 210, 235, 282, 348, 420, 429
SfcI	CTRYAG	2 cut(s)	341, 393
Sse9I	AATT	3 cut(s)	298, 321, 363
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	153
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	298, 321, 363
TauI	GCSGC	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	5 cut(s)	26, 84, 208, 340, 343
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	27, 174, 338
XapI	RAATTY	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	330
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.