Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006949

Physical Location & Seq

Genomic Coordinates Forward (+)

3218095 .. 3218652

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAAAGATAGACCTATTTCTTGCATGGTTATGCATCAGCCAAAAAATGGATCGGGATGAACTATATGATTCTGGTGGAGTCTTCATTGGTGTTCTTGCCATAATCATACTGATCATTGTAATTTCTTACTGCCATCGCAGGCAATCCCTGGTCGATCCGTCAGATCATGATGAGTCATCTGCAACAACTGAACAAGGCCTTGACGAAGCTACAATATGTGCATATCCAAAGCTGCTTTACTCAGAAGCCAAGCTGCACCTGATTGATTCAATTTCATGTACTTCTCCTTCTTGTTGCAGCATATGCTTGGCTGATTTTGAAGACAAGGATGTATTGAGATCTGTCCCTAATTGTGGCCATTTCTTTCACCAACTATGCGTGGACAAATGGTTGCTGCTTCACCCCACATGCCCAGTTTGCAGAAACTCACTTGTCGATCCATTGACTTCTGTTGGTTCTGTACCTGAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

158

Amino Acids

17.56

Weight (kDa)

4.92

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	98 - 142	4e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	99 - 142	6.6e-13	Ring finger domain
zf-RING_11	PF17123	100 - 128	1.1e-08	RING-like zinc finger
zf-C3HC4	PF00097	100 - 141	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	100 - 141	7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006949)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01050
malus_domestica	MD02G1311700.v1.1 MD07G1010800.v1.1
prunus_persica	Prupe.2G013300_v2.0.a1
pyrus_communis	pycom02g26170 pycom07g00900
rosa_chinensis	RchiOBHm_Chr1g0316001 RchiOBHm_Chr1g0316011
rosa_laevigata	RLG00000030709 RLG00000030712 RLG00000030717
rosa_multiflora	Rmu_co8345883.1_g000001 Rmu_sc0002014.1_g000042 Rmu_sc0005954.1_g000006 Rmu_sc0005954.1_g000016
rosa_roxburghii	Rroxscaffold_4G00331200
rosa_rugosa	Rorug01G0007700 Rorug01G0008200
rosa_samantha	Rh1AG018400 Rh1BG011600 Rh1BG012200 Rh1CG015600 Rh1CG015700 Rh1DG011800
rosa_wichuraiana	Rw1G001140 Rw1G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AclWI	GGATC	3 cut(s)	60, 152, 434
AcoI	YGGCCR	1 cut(s)	358
AfaI	GTAC	2 cut(s)	283, 465
AfiI	CCNNNNNNNGG	2 cut(s)	49, 356
AgsI	TTSAA	2 cut(s)	273, 323
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	212, 235, 256
AluI	AGCT	3 cut(s)	212, 235, 256
AlwI	GGATC	3 cut(s)	60, 152, 434
AoxI	GGCC	2 cut(s)	199, 358
ApeKI	GCWGC	4 cut(s)	235, 256, 300, 397
AsuHPI	GGTGA	2 cut(s)	362, 395
AxyI	CCTNAGG	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	360
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BbsI	GAAGAC	2 cut(s)	76, 330
BbvI	GCAGC	4 cut(s)	222, 243, 312, 384
BccI	CCATC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	152
BclI	TGATCA	1 cut(s)	114
BfaI	CTAG	1 cut(s)	475
BglII	AGATCT	1 cut(s)	341
BisI	GCNGC	4 cut(s)	236, 257, 301, 398
BlsI	GCNGC	4 cut(s)	237, 258, 302, 399
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	76, 330
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 356
Bse1I	ACTGG	1 cut(s)	416
Bse21I	CCTNAGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	64, 337
BseLI	CCNNNNNNNGG	2 cut(s)	49, 356
BseMII	CTCAG	2 cut(s)	258, 459
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	4 cut(s)	222, 243, 312, 384
BsgI	GTGCAG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	201, 360
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	49, 356
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	201, 360
Bsp143I	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
BspANI	GGCC	2 cut(s)	201, 360
BspCNI	CTCAG	2 cut(s)	257, 460
BspHI	TCATGA	1 cut(s)	169
BspPI	GGATC	3 cut(s)	60, 152, 434
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
Bst2UI	CCWGG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	244, 468
BstF5I	GGATG	2 cut(s)	64, 337
BstKTI	GATC	6 cut(s)	55, 117, 160, 169, 344, 442
BstMBI	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 420
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	4 cut(s)	222, 243, 312, 384
BstV2I	GAAGAC	2 cut(s)	76, 330
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	201, 360
BtgZI	GCGATG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	64, 337
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	282, 464
CviAII	CATG	4 cut(s)	27, 170, 279, 411
CviJI	RGCY	8 cut(s)	42, 201, 212, 235, 251, 256, 314, 360
CviKI_1	RGCY	8 cut(s)	42, 201, 212, 235, 251, 256, 314, 360
CviQI	GTAC	2 cut(s)	282, 464
DdeI	CTNAG	2 cut(s)	244, 468
DpnI	GATC	6 cut(s)	54, 116, 159, 168, 343, 441
DpnII	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
EaeI	YGGCCR	1 cut(s)	358
Eco147I	AGGCCT	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	38
FaeI	CATG	4 cut(s)	30, 173, 282, 414
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	4 cut(s)	26, 169, 278, 410
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	236, 257, 301, 398
FokI	GGATG	2 cut(s)	71, 344
Fsp4HI	GCNGC	4 cut(s)	236, 257, 301, 398
FspBI	CTAG	1 cut(s)	475
GluI	GCNGC	4 cut(s)	236, 257, 301, 398
HaeIII	GGCC	2 cut(s)	201, 360
Hin1II	CATG	4 cut(s)	30, 173, 282, 414
HinfI	GANTC	4 cut(s)	71, 81, 176, 269
HphI	GGTGA	2 cut(s)	362, 395
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	166, 247
Hpy188III	TCNNGA	2 cut(s)	56, 170
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	300
HpyCH4V	TGCA	7 cut(s)	26, 36, 185, 224, 259, 300, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 420
HpyF3I	CTNAG	2 cut(s)	244, 468
Hsp92II	CATG	4 cut(s)	30, 173, 282, 414
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
LpnPI	CCDG	6 cut(s)	60, 127, 137, 164, 275, 429
Lsp1109I	GCAGC	4 cut(s)	222, 243, 312, 384
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	475
MalI	GATC	6 cut(s)	54, 116, 159, 168, 343, 441
MboI	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
MboII	GAAGA	2 cut(s)	76, 335
MflI	RGATCY	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	3 cut(s)	123, 273, 352
MluNI	TGGCCA	1 cut(s)	360
MlyI	GAGTC	2 cut(s)	90, 185
MnlI	CCTC	1 cut(s)	463
Mox20I	TGGCCA	1 cut(s)	360
Mph1103I	ATGCAT	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	31
Msp20I	TGGCCA	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	306, 420
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
NlaIII	CATG	4 cut(s)	30, 173, 282, 414
NsiI	ATGCAT	1 cut(s)	38
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	71, 269
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	237, 258, 302, 399
PleI	GAGTC	2 cut(s)	89, 184
PpsI	GAGTC	2 cut(s)	89, 184
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	2 cut(s)	283, 465
RsaNI	GTAC	2 cut(s)	282, 464
RseI	CAYNNNNRTG	1 cut(s)	31
SatI	GCNGC	4 cut(s)	236, 257, 301, 398
Sau3AI	GATC	6 cut(s)	52, 114, 157, 166, 341, 439
SchI	GAGTC	2 cut(s)	90, 185
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	7 cut(s)	18, 214, 237, 258, 264, 469, 474
SfaNI	GCATC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	31
Sse9I	AATT	3 cut(s)	123, 273, 352
SseBI	AGGCCT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	475
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	150
TaqI	TCGA	2 cut(s)	156, 438
TasI	AATT	3 cut(s)	123, 273, 352
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	71, 269
TseI	GCWGC	4 cut(s)	235, 256, 300, 397
TspDTI	ATGAA	4 cut(s)	17, 75, 76, 267
TspGWI	ACGGA	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	414
XspI	CTAG	1 cut(s)	475
Zsp2I	ATGCAT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.