Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014785

Physical Location & Seq

Genomic Coordinates Reverse (-)

2454738 .. 2457342

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGGAAATGGAGGCATCGCCCCAATCGCAGATTCTTCCGTCAAGAAAAGCTTCCAAGCCCAACCCCTCTCCCTTTTCACCCTCAACCTCCTTCCCCTTCAGAGTTTTGGCGGGATGGTATACCTCAATGGGAAAAGGAATACTGCACTTTGATTGGGTCCATACCATGGTGGAAGGTAGTAGATGCCAAGAATCATATGTATGGTAGTAGTAATGTAGTCAATTGGGATGACTCAGCTGGTGAAGAGGCATTTCAAAATGCAAAAAAGCGCTTTTGGGCAGACATCAACAGCCTCCACTGTGACATCTCTCTACCTGCTTCAGATATTTATATTGATGAAATAGATTGGAACCCTTTCATTGATCCTGATATTGTTAAGGAAGTGGATCGTGCGTACTTTTCTCCTGATGATGAAGGAAATGACAAGTCGGAGCACAAAAAGAGGAAGACAGAACATTCAGCTGTAGTTCCTTTAGATAGACGTAACTTTCTTCCAGATACTCATACAAATCCTTGGGAATGTGACAATATGCAGAGTAGCAGGAATTCGCAAAATGAAGAACAGGGCTGGAACCAAGGGAATAATCATAGAGGTTTGGTTAATGGTAATGACAACCCCTGGGAACGTGGCAATACTCAGAGCAATGTAAGAATGGAAATTACTGTATGGGAAGATAGTAGGGATAAGTCATGGAGATTGAGCCAGATGGGAAAAGACAGTCTCTCGAAAAATTGGGATGATGGTGGCAATCCTTGGCCACAAGACTGTCAGGGTGTTAACCATGCTAAAGGTAGTAATAGTTGGGGTGATCCCTTAAATAAGTCTTGGGGTTCCATTCAGCCGAAGATAAATTTGTGTGATGGTGAAAATTCTTGGGGGTGTGGTCCTAGTCAATATAATGATGCTTCAACGAAAGATCGAGGATGGAAAGATTGTGGAGGAGAGGAGCGGCGTTGGAAACGGTGTGATAGTCGTATTGATCAGAGAAATAATTTGGATTTTAGGATAAAAAGTAACGGATGGGGAACTAGGAATGACAGTGGCCAGAAGAGGGGACAGTCTCACCAACAAAACTCAAGACTTAAAGGGAGTGATTGTCAAACAGGTGGATACTGGAATGATTGTGGCCAAAAGAGGGGACAGTCTCACCAATATATTGCCGGCTACCGTTCCGACAAATGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

397

Amino Acids

45.95

Weight (kDa)

6.61

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014785)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02130 FvH4_7g02130
malus_domestica	MD02G1297200.v1.1
prunus_persica	Prupe.2G026900_v2.0.a1
pyrus_communis	pycom02g25040 pycom07g02040
rosa_chinensis	RchiOBHm_Chr1g0319371
rosa_laevigata	RLG00000030492
rosa_multiflora	Rmu_sc0005870.1_g000004 Rmu_sc0014506.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328530
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039400 Rh1BG036200 Rh1CG038300 Rh1DG031500
rosa_wichuraiana	Rw1G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccBSI	CCGCTC	1 cut(s)	952
AccI	GTMKAC	1 cut(s)	121
AciI	CCGC	2 cut(s)	112, 952
AclWI	GGATC	3 cut(s)	359, 396, 806
AcoI	YGGCCR	3 cut(s)	758, 1045, 1129
AcsI	RAATTY	3 cut(s)	547, 853, 871
AcuI	CTGAAG	2 cut(s)	84, 306
AfaI	GTAC	1 cut(s)	398
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	4 cut(s)	168, 1054, 1138, 1182
AgsI	TTSAA	2 cut(s)	257, 912
AjnI	CCWGG	1 cut(s)	620
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	3 cut(s)	52, 239, 464
AluI	AGCT	3 cut(s)	52, 239, 464
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	3 cut(s)	728, 1068, 1152
AlwI	GGATC	3 cut(s)	359, 396, 806
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	3 cut(s)	758, 1045, 1129
ApoI	RAATTY	3 cut(s)	547, 853, 871
Asp700I	GAANNNNTTC	2 cut(s)	51, 356
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	159, 887
AsuHPI	GGTGA	6 cut(s)	71, 254, 821, 878, 1058, 1142
AvaII	GGWCC	2 cut(s)	159, 887
BalI	TGGCCA	3 cut(s)	760, 1047, 1131
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	438
BccI	CCATC	6 cut(s)	110, 703, 737, 857, 921, 1017
BciT130I	CCWGG	1 cut(s)	622
BciVI	GTATCC	1 cut(s)	1106
BclI	TGATCA	1 cut(s)	982
BcoDI	GTCTC	3 cut(s)	728, 1068, 1152
BfaI	CTAG	2 cut(s)	891, 1032
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	1106
BisI	GCNGC	1 cut(s)	953
BlsI	GCNGC	1 cut(s)	954
Bme1390I	CCNGG	1 cut(s)	622
Bme18I	GGWCC	2 cut(s)	159, 887
BmgT120I	GGNCC	2 cut(s)	159, 887
BmiI	GGNNCC	4 cut(s)	160, 353, 575, 835
BmrFI	CCNGG	1 cut(s)	622
BmsI	GCATC	3 cut(s)	25, 175, 895
BpiI	GAAGAC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	1063
BsaJI	CCNNGG	6 cut(s)	167, 515, 577, 620, 621, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	1084, 1114
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 1054, 1138, 1182
Bse118I	RCCGGY	1 cut(s)	1163
Bse1I	ACTGG	1 cut(s)	1121
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	6 cut(s)	167, 515, 577, 620, 621, 755
BseGI	GGATG	5 cut(s)	121, 235, 745, 932, 1028
BseLI	CCNNNNNNNGG	4 cut(s)	168, 1054, 1138, 1182
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	2 cut(s)	249, 653
BseNI	ACTGG	1 cut(s)	1121
BseRI	GAGGAG	2 cut(s)	957, 962
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	760, 1047, 1131
BsiHKAI	GWGCWC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	1164
BslFI	GGGAC	2 cut(s)	1071, 1155
BslI	CCNNNNNNNGG	4 cut(s)	168, 1054, 1138, 1182
BsmAI	GTCTC	3 cut(s)	728, 1068, 1152
BsmFI	GGGAC	2 cut(s)	1071, 1155
BsnI	GGCC	3 cut(s)	760, 1047, 1131
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	5 cut(s)	364, 388, 811, 919, 982
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	2 cut(s)	112, 952
BspANI	GGCC	3 cut(s)	760, 1047, 1131
BspCNI	CTCAG	2 cut(s)	248, 652
BspLI	GGNNCC	4 cut(s)	160, 353, 575, 835
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	3 cut(s)	359, 396, 806
BsrBI	CCGCTC	1 cut(s)	952
BsrDI	GCAATG	1 cut(s)	652
BsrFI	RCCGGY	1 cut(s)	1163
BsrI	ACTGG	1 cut(s)	1121
BssAI	RCCGGY	1 cut(s)	1163
BssECI	CCNNGG	6 cut(s)	167, 515, 577, 620, 621, 755
BssMI	GATC	5 cut(s)	364, 388, 811, 919, 982
BssNAI	GTATAC	1 cut(s)	122
BssT1I	CCWWGG	4 cut(s)	167, 515, 577, 755
Bst1107I	GTATAC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	9 cut(s)	302, 667, 722, 770, 966, 1043, 1062, 1146, 1172
Bst6I	CTCTTC	2 cut(s)	240, 1046
BstC8I	GCNNGC	1 cut(s)	1165
BstDEI	CTNAG	2 cut(s)	235, 639
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	5 cut(s)	121, 235, 745, 932, 1028
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	5 cut(s)	367, 391, 814, 922, 985
BstMAI	GTCTC	3 cut(s)	728, 1068, 1152
BstMBI	GATC	5 cut(s)	364, 388, 811, 919, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	622
BstSCI	CCNGG	1 cut(s)	620
BstSFI	CTRYAG	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	455
BstZ17I	GTATAC	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	1106
BsuRI	GGCC	3 cut(s)	760, 1047, 1131
BtgI	CCRYGG	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	2
BtsCI	GGATG	5 cut(s)	121, 235, 745, 932, 1028
BtsIMutI	CAGTG	2 cut(s)	298, 1048
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	1165
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	1163
Cfr13I	GGNCC	2 cut(s)	159, 887
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	168, 693, 785
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	235, 639
DpnI	GATC	5 cut(s)	366, 390, 813, 921, 984
DpnII	GATC	5 cut(s)	364, 388, 811, 919, 982
EaeI	YGGCCR	3 cut(s)	758, 1045, 1129
Eam1104I	CTCTTC	2 cut(s)	240, 1046
EarI	CTCTTC	2 cut(s)	240, 1046
Eco130I	CCWWGG	4 cut(s)	167, 515, 577, 755
Eco47I	GGWCC	2 cut(s)	159, 887
Eco47III	AGCGCT	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	84, 306
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	4 cut(s)	167, 515, 577, 755
ErhI	CCWWGG	4 cut(s)	167, 515, 577, 755
FaeI	CATG	3 cut(s)	171, 696, 788
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	2 cut(s)	1071, 1155
FatI	CATG	3 cut(s)	167, 692, 784
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	982
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	953
FokI	GGATG	5 cut(s)	128, 242, 752, 939, 1035
Fsp4HI	GCNGC	1 cut(s)	953
FspBI	CTAG	2 cut(s)	891, 1032
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	953
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	760, 1047, 1131
HapII	CCGG	1 cut(s)	1164
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	171, 696, 788
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	3 cut(s)	33, 193, 233
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	1 cut(s)	1164
HphI	GGTGA	6 cut(s)	71, 254, 821, 878, 1058, 1142
Hpy166II	GTNNAC	2 cut(s)	122, 781
Hpy188I	TCNGA	6 cut(s)	103, 325, 433, 642, 987, 1177
Hpy188III	TCNNGA	6 cut(s)	44, 368, 407, 497, 727, 1080
Hpy8I	GTNNAC	2 cut(s)	122, 781
HpyAV	CCTTC	4 cut(s)	102, 108, 169, 410
HpyCH4III	ACNGT	9 cut(s)	302, 667, 722, 770, 966, 1043, 1062, 1146, 1172
HpyCH4IV	ACGT	2 cut(s)	484, 628
HpyCH4V	TGCA	3 cut(s)	147, 263, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	2 cut(s)	235, 639
HpySE526I	ACGT	2 cut(s)	484, 628
Hsp92II	CATG	3 cut(s)	171, 696, 788
HspAI	GCGC	1 cut(s)	271
KroI	GCCGGC	1 cut(s)	1163
KroNI	GCCGGC	1 cut(s)	1165
Ksp22I	TGATCA	1 cut(s)	982
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	5 cut(s)	364, 388, 811, 919, 982
LmnI	GCTCC	2 cut(s)	433, 949
LweI	GCATC	3 cut(s)	25, 175, 895
MaeI	CTAG	2 cut(s)	891, 1032
MaeII	ACGT	2 cut(s)	484, 628
MaeIII	GTNAC	4 cut(s)	302, 485, 524, 1016
MalI	GATC	5 cut(s)	366, 390, 813, 921, 984
MbiI	CCGCTC	1 cut(s)	952
MboI	GATC	5 cut(s)	364, 388, 811, 919, 982
MboII	GAAGA	8 cut(s)	28, 257, 460, 485, 572, 686, 859, 1063
MfeI	CAATTG	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	438
MlsI	TGGCCA	3 cut(s)	760, 1047, 1131
MluCI	AATT	7 cut(s)	223, 547, 660, 733, 853, 871, 994
MluNI	TGGCCA	3 cut(s)	760, 1047, 1131
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	411, 938
Mox20I	TGGCCA	3 cut(s)	760, 1047, 1131
MroNI	GCCGGC	1 cut(s)	1163
MroXI	GAANNNNTTC	2 cut(s)	51, 356
MscI	TGGCCA	3 cut(s)	760, 1047, 1131
MseI	TTAA	5 cut(s)	378, 603, 780, 818, 1086
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	3 cut(s)	760, 1047, 1131
MspA1I	CMGCKG	2 cut(s)	239, 464
MspI	CCGG	1 cut(s)	1164
MspR9I	CCNGG	1 cut(s)	622
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	622
MwoI	GCNNNNNNNGC	1 cut(s)	27
NaeI	GCCGGC	1 cut(s)	1165
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	5 cut(s)	364, 388, 811, 919, 982
NgoMIV	GCCGGC	1 cut(s)	1163
NlaIII	CATG	3 cut(s)	171, 696, 788
NlaIV	GGNNCC	4 cut(s)	160, 353, 575, 835
NmuCI	GTSAC	2 cut(s)	302, 524
PasI	CCCWGGG	1 cut(s)	621
PdiI	GCCGGC	1 cut(s)	1165
PdmI	GAANNNNTTC	2 cut(s)	51, 356
PfeI	GAWTC	2 cut(s)	33, 193
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	954
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	4 cut(s)	160, 353, 575, 835
PspPI	GGNCC	2 cut(s)	159, 887
PvuII	CAGCTG	2 cut(s)	239, 464
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	5 cut(s)	378, 603, 780, 818, 1086
SatI	GCNGC	1 cut(s)	953
Sau3AI	GATC	5 cut(s)	364, 388, 811, 919, 982
Sau96I	GGNCC	2 cut(s)	159, 887
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	3 cut(s)	25, 175, 895
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	159, 887
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	1078
SmoI	CTYRAG	1 cut(s)	1078
Sse9I	AATT	7 cut(s)	223, 547, 660, 733, 853, 871, 994
SsiI	CCGC	2 cut(s)	112, 952
SspMI	CTAG	2 cut(s)	891, 1032
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	4 cut(s)	167, 515, 577, 755
TaaI	ACNGT	9 cut(s)	302, 667, 722, 770, 966, 1043, 1062, 1146, 1172
TaiI	ACGT	2 cut(s)	487, 631
TaqI	TCGA	2 cut(s)	728, 922
TasI	AATT	7 cut(s)	223, 547, 660, 733, 853, 871, 994
TauI	GCSGC	1 cut(s)	955
TfiI	GAWTC	2 cut(s)	33, 193
Tru1I	TTAA	5 cut(s)	378, 603, 780, 818, 1086
Tru9I	TTAA	5 cut(s)	378, 603, 780, 818, 1086
TscAI	CASTG	2 cut(s)	305, 1048
TseFI	GTSAC	2 cut(s)	302, 524
Tsp45I	GTSAC	2 cut(s)	302, 524
TspDTI	ATGAA	4 cut(s)	349, 354, 429, 573
TspGWI	ACGGA	2 cut(s)	29, 1035
TspRI	CASTG	2 cut(s)	305, 1048
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	159, 887
XapI	RAATTY	3 cut(s)	547, 853, 871
XmiI	GTMKAC	1 cut(s)	121
XmnI	GAANNNNTTC	2 cut(s)	51, 356
XspI	CTAG	2 cut(s)	891, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.