Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014785

Physical Location & Seq

Genomic Coordinates Reverse (-)

61566645 .. 61568530

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGTAAATGGGGACATCGCCCCAATCGCAGATTCTTCCGTCAAGAAAAGCTTCCAAGCCCATTCCCTCTTCCTTTTCACCCTCAACCTCCTCCCCTTCAGTTTTGGCGGGATGGTGTACCTCAATGGGAAAAGGAATACTGCACCTTGATCGGGTCCATACCATGGTGGAAGGTGGTAGATGCCAAGAATTATATGTATGGCAGTAGTAATGTACTCAATTGGGACGATTCAGCTGGTGAGGAGTCATTTCAAAATGCGAAAAAGCGCTTTTGGGCAGACATCAATGGCCTCCACTGTGACATCTCTCTACCTGATTCAGATATTTATATTGATGAAATAGATTGGAACCCTTTCATCAATCCTGATATCGTGAAGGAAGTGGATCGTGAGTACTTTGCTCCTGATGATGGAGATGGAGATGGAGAAGGAAATGATAAGTTGGGGCAGAAAAAGAGGAAGACAGAACATTCAGCTATTATTCCTTTAGATGGACATAACTGTCTTCCAGATACTCCTACAAATCCTTGGGAATGTGACAATATGCAAAGTAGTGGGGATTTGAAAAATGAAGTAGAGGGCTGGAACCAGGGGAATAATCGTACAGATTTGGTTAGTGGTGAAGTCAACTCCTGGGAACGCTTCATTACTCAGAGCCATGAAAGAATGGAAAATACTGCATGGGAAGATAGGGATAAATCATGGAGATGGAGCCAGATGGCAAAAAACAGTCTCTCAAAGAATTGGGATGATGGTGGCAATCCTTGGGCACGGGACTGTCAGGGTGTTACCCATGTGAAAGTTAATAATAGATGGGGTGATCCCTTAAATAAGTCTTGGGGCTCCAACCAGCCGGAGACAAAGAATTTGGATCATGGTGAAAATCCTTGGGAGTGTGGTCCTAGTCAATATAATGAAGCTTTAACAAAAGATCGAGGATGGAAAGATTGTAGAGGTTGGAAACAGTGTGACAGCCGTATTAACCAGAGAAATAATTTGGATTTTAGGATAAAAGGTAGCAGATGGGGAACTACGAATCACAGTGGCCAGAAGAGGGAACGGTCTCACCAATATATAGCAGGATCCCGAAGCTCAAGATTTCAAGGGAGTGATTGTCAAACAGATGGATACTGGAGGAGGGCAAACAATAGAAAGAGACTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

388

Amino Acids

45.23

Weight (kDa)

6.24

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014785)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02130 FvH4_7g02130
malus_domestica	MD02G1297200.v1.1
prunus_persica	Prupe.2G026900_v2.0.a1
pyrus_communis	pycom02g25040 pycom07g02040
rosa_chinensis	RchiOBHm_Chr1g0319371
rosa_laevigata	RLG00000030492
rosa_multiflora	Rmu_sc0005870.1_g000004 Rmu_sc0014506.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328530
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039400 Rh1BG036200 Rh1CG038300 Rh1DG031500
rosa_wichuraiana	Rw1G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	501
AccB7I	CCANNNNNTGG	1 cut(s)	165
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	5 cut(s)	393, 815, 879, 1077, 1090
AcoI	YGGCCR	1 cut(s)	1045
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	120, 216, 395, 604
AfeI	AGCGCT	1 cut(s)	269
AfiI	CCNNNNNNNGG	5 cut(s)	153, 165, 410, 491, 1054
AgsI	TTSAA	3 cut(s)	254, 565, 1103
AjnI	CCWGG	2 cut(s)	588, 632
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	6 cut(s)	52, 236, 476, 920, 1092, 1164
AluI	AGCT	6 cut(s)	52, 236, 476, 920, 1092, 1164
Alw26I	GTCTC	4 cut(s)	737, 851, 1068, 1150
AlwI	GGATC	5 cut(s)	393, 815, 879, 1077, 1090
Aor51HI	AGCGCT	1 cut(s)	269
AoxI	GGCC	2 cut(s)	289, 1045
ApoI	RAATTY	1 cut(s)	865
ArsI	GACNNNNNNTTYG	2 cut(s)	850, 882
Asp700I	GAANNNNTTC	2 cut(s)	51, 353
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	156, 899
AsuHPI	GGTGA	6 cut(s)	71, 251, 632, 830, 890, 1058
AvaII	GGWCC	2 cut(s)	156, 899
BaeGI	GKGCMC	1 cut(s)	772
BalI	TGGCCA	1 cut(s)	1047
BamHI	GGATCC	1 cut(s)	1082
BanII	GRGCYC	1 cut(s)	845
BbsI	GAAGAC	2 cut(s)	467, 497
BceAI	ACGGC	1 cut(s)	960
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	590, 634
BciVI	GTATCC	1 cut(s)	1121
BcoDI	GTCTC	4 cut(s)	737, 851, 1068, 1150
BfaI	CTAG	1 cut(s)	903
BfoI	RGCGCY	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	1121
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	590, 634
Bme18I	GGWCC	2 cut(s)	156, 899
BmgT120I	GGNCC	2 cut(s)	156, 899
BmiI	GGNNCC	6 cut(s)	157, 350, 587, 713, 844, 1084
BmrFI	CCNGG	2 cut(s)	590, 634
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	467, 497
BpmI	CTGGAG	1 cut(s)	1153
BpuEI	CTTGAG	1 cut(s)	1078
BsaI	GGTCTC	1 cut(s)	1068
BsaJI	CCNNGG	6 cut(s)	164, 527, 589, 633, 764, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	1099, 1129
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 165, 410, 491, 1054
Bse1I	ACTGG	1 cut(s)	1136
BseBI	CCWGG	2 cut(s)	590, 634
BseDI	CCNNGG	6 cut(s)	164, 527, 589, 633, 764, 887
BseGI	GGATG	3 cut(s)	118, 754, 944
BseLI	CCNNNNNNNGG	5 cut(s)	153, 165, 410, 491, 1054
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	1136
BseRI	GAGGAG	3 cut(s)	81, 257, 1150
BseSI	GKGCMC	1 cut(s)	772
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	291, 1047
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	3 cut(s)	27, 239, 788
BslI	CCNNNNNNNGG	5 cut(s)	153, 165, 410, 491, 1054
BsmAI	GTCTC	4 cut(s)	737, 851, 1068, 1150
BsmFI	GGGAC	3 cut(s)	27, 239, 788
BsnI	GGCC	2 cut(s)	291, 1047
Bso31I	GGTCTC	1 cut(s)	1068
Bsp1286I	GDGCHC	2 cut(s)	772, 845
Bsp143I	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	291, 1047
BspCNI	CTCAG	1 cut(s)	664
BspLI	GGNNCC	6 cut(s)	157, 350, 587, 713, 844, 1084
BspPI	GGATC	5 cut(s)	393, 815, 879, 1077, 1090
BspTNI	GGTCTC	1 cut(s)	1068
BsrI	ACTGG	1 cut(s)	1136
BssECI	CCNNGG	6 cut(s)	164, 527, 589, 633, 764, 887
BssMI	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
BssT1I	CCWWGG	4 cut(s)	164, 527, 764, 887
Bst2UI	CCWGG	2 cut(s)	590, 634
Bst4CI	ACNGT	7 cut(s)	299, 503, 731, 779, 966, 1043, 1062
Bst6I	CTCTTC	2 cut(s)	75, 1046
BstDEI	CTNAG	2 cut(s)	651, 1160
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	118, 754, 944
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	6 cut(s)	153, 388, 823, 874, 934, 1085
BstMAI	GTCTC	4 cut(s)	737, 851, 1068, 1150
BstMBI	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	2 cut(s)	590, 634
BstSCI	CCNGG	2 cut(s)	588, 632
BstSLI	GKGCMC	1 cut(s)	772
BstV2I	GAAGAC	2 cut(s)	467, 497
BstX2I	RGATCY	1 cut(s)	1082
BstYI	RGATCY	1 cut(s)	1082
BsuI	GTATCC	1 cut(s)	1121
BsuRI	GGCC	2 cut(s)	291, 1047
BtgI	CCRYGG	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	2
BtsCI	GGATG	3 cut(s)	118, 754, 944
BtsIMutI	CAGTG	3 cut(s)	295, 971, 1048
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	156, 899
Csp6I	GTAC	4 cut(s)	119, 215, 394, 603
CviAII	CATG	6 cut(s)	165, 659, 681, 702, 794, 875
CviQI	GTAC	4 cut(s)	119, 215, 394, 603
DdeI	CTNAG	2 cut(s)	651, 1160
DpnI	GATC	6 cut(s)	152, 387, 822, 873, 933, 1084
DpnII	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
DrdI	GACNNNNNNGTC	1 cut(s)	501
DseDI	GACNNNNNNGTC	1 cut(s)	501
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	2 cut(s)	75, 1046
EarI	CTCTTC	2 cut(s)	75, 1046
Eco130I	CCWWGG	4 cut(s)	164, 527, 764, 887
Eco24I	GRGCYC	1 cut(s)	845
Eco31I	GGTCTC	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	156, 899
Eco47III	AGCGCT	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	588, 632
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	4 cut(s)	164, 527, 764, 887
EcoT38I	GRGCYC	1 cut(s)	845
ErhI	CCWWGG	4 cut(s)	164, 527, 764, 887
FaeI	CATG	6 cut(s)	168, 662, 684, 705, 797, 878
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	3 cut(s)	27, 239, 788
FatI	CATG	6 cut(s)	164, 658, 680, 701, 793, 874
FauI	CCCGC	1 cut(s)	102
FokI	GGATG	3 cut(s)	125, 761, 951
FriOI	GRGCYC	1 cut(s)	845
FspBI	CTAG	1 cut(s)	903
GlaI	GCGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	1153
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	291, 1047
HapII	CCGG	1 cut(s)	854
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	6 cut(s)	168, 662, 684, 705, 797, 878
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	2 cut(s)	50, 918
HinfI	GANTC	6 cut(s)	33, 230, 245, 317, 1036, 1158
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	6 cut(s)	71, 251, 632, 830, 890, 1058
Hpy166II	GTNNAC	2 cut(s)	119, 628
Hpy188I	TCNGA	2 cut(s)	322, 654
Hpy188III	TCNNGA	8 cut(s)	44, 365, 373, 389, 404, 509, 1086, 1095
Hpy8I	GTNNAC	2 cut(s)	119, 628
HpyAV	CCTTC	4 cut(s)	107, 166, 370, 422
HpyCH4III	ACNGT	7 cut(s)	299, 503, 731, 779, 966, 1043, 1062
HpyCH4V	TGCA	3 cut(s)	144, 547, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpyF3I	CTNAG	2 cut(s)	651, 1160
Hsp92II	CATG	6 cut(s)	168, 662, 684, 705, 797, 878
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
LmnI	GCTCC	3 cut(s)	406, 711, 848
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	903
MaeIII	GTNAC	4 cut(s)	299, 536, 787, 968
MalI	GATC	6 cut(s)	152, 387, 822, 873, 933, 1084
MboI	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
MboII	GAAGA	6 cut(s)	28, 62, 472, 497, 698, 1063
MfeI	CAATTG	1 cut(s)	220
MflI	RGATCY	1 cut(s)	1082
MhlI	GDGCHC	2 cut(s)	772, 845
MlsI	TGGCCA	1 cut(s)	1047
MluCI	AATT	5 cut(s)	190, 220, 742, 865, 994
MluNI	TGGCCA	1 cut(s)	1047
MlyI	GAGTC	2 cut(s)	254, 1152
MmeI	TCCRAC	2 cut(s)	870, 938
Mox20I	TGGCCA	1 cut(s)	1047
MroXI	GAANNNNTTC	2 cut(s)	51, 353
MscI	TGGCCA	1 cut(s)	1047
MseI	TTAA	4 cut(s)	804, 827, 923, 981
MslI	CAYNNNNRTG	1 cut(s)	706
Msp20I	TGGCCA	1 cut(s)	1047
MspA1I	CMGCKG	2 cut(s)	236, 1164
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	2 cut(s)	590, 634
MunI	CAATTG	1 cut(s)	220
MvaI	CCWGG	2 cut(s)	590, 634
MwoI	GCNNNNNNNGC	1 cut(s)	27
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
NlaIII	CATG	6 cut(s)	168, 662, 684, 705, 797, 878
NlaIV	GGNNCC	6 cut(s)	157, 350, 587, 713, 844, 1084
NmuCI	GTSAC	3 cut(s)	299, 536, 968
PdmI	GAANNNNTTC	2 cut(s)	51, 353
PfeI	GAWTC	4 cut(s)	33, 230, 317, 1036
PflMI	CCANNNNNTGG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	253, 1152
PpsI	GAGTC	2 cut(s)	253, 1152
Psp6I	CCWGG	2 cut(s)	588, 632
PspGI	CCWGG	2 cut(s)	588, 632
PspN4I	GGNNCC	6 cut(s)	157, 350, 587, 713, 844, 1084
PspPI	GGNCC	2 cut(s)	156, 899
PsuI	RGATCY	1 cut(s)	1082
PvuII	CAGCTG	2 cut(s)	236, 1164
RsaI	GTAC	4 cut(s)	120, 216, 395, 604
RsaNI	GTAC	4 cut(s)	119, 215, 394, 603
RseI	CAYNNNNRTG	1 cut(s)	706
SaqAI	TTAA	4 cut(s)	804, 827, 923, 981
Sau3AI	GATC	6 cut(s)	150, 385, 820, 871, 931, 1082
Sau96I	GGNCC	2 cut(s)	156, 899
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	2 cut(s)	254, 1152
ScrFI	CCNGG	2 cut(s)	590, 634
SduI	GDGCHC	2 cut(s)	772, 845
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	2 cut(s)	156, 899
SmiMI	CAYNNNNRTG	1 cut(s)	706
SmlI	CTYRAG	1 cut(s)	1093
SmoI	CTYRAG	1 cut(s)	1093
Sse9I	AATT	5 cut(s)	190, 220, 742, 865, 994
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	1 cut(s)	903
StyD4I	CCNGG	2 cut(s)	588, 632
StyI	CCWWGG	4 cut(s)	164, 527, 764, 887
TaaI	ACNGT	7 cut(s)	299, 503, 731, 779, 966, 1043, 1062
TaqI	TCGA	1 cut(s)	934
TasI	AATT	5 cut(s)	190, 220, 742, 865, 994
TatI	WGTACW	2 cut(s)	214, 393
TfiI	GAWTC	4 cut(s)	33, 230, 317, 1036
Tru1I	TTAA	4 cut(s)	804, 827, 923, 981
Tru9I	TTAA	4 cut(s)	804, 827, 923, 981
TscAI	CASTG	3 cut(s)	302, 971, 1048
TseFI	GTSAC	3 cut(s)	299, 536, 968
Tsp45I	GTSAC	3 cut(s)	299, 536, 968
TspDTI	ATGAA	6 cut(s)	346, 351, 585, 634, 675, 930
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	302, 971, 1048
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	156, 899
XapI	RAATTY	1 cut(s)	865
XmnI	GAANNNNTTC	2 cut(s)	51, 353
XspI	CTAG	1 cut(s)	903
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.