Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014785

Physical Location & Seq

Genomic Coordinates Forward (+)

6964713 .. 6967332

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGTAAATGGGGACATCGTCCCAATCGCAGGTTCTTCCGTCAAGAAAAGCTTCCAAGCCCATTCCCTCTTCCTTTTCACCCTCAACCTCCTCCCCCTTCAGAGTTTTGGCGGGATGGTGTACCTCAATGGGAAAAAGAATACTGCACTTTGATCGGGTCCATACCATGGTGGAAGGTGGTAGATGCCAAGAATTATATGTATGGCAGTAGTAATGTACTCAATTGGGACGATTCAGCTGGTGAGGAGGCATTTCAAAATGCGAAAAAGCGCTTTTGGGCAGACATCAACGGCCTCCACTGTGACATCTCTCTACCTGATTCAGATATTTATATTGATGAAATAGATTGGAACCCTTTCATCGATCCTGATATCGTGAAGGAAGTGGATCGTGAGTACTTTGCTCCTGATGATGGAGATGGAGAAGGAAATGACAAGTTGGGGCAGAAAAAGAGGAAAGAACATTCAGCTATTATTCCTTTAGATGGACATAACTGTCTTCCAGATAATCCTACAAATCCTTGGGAATGTGACAATATGCAAAGTAGTGGGGATTTGAAAAATGAAGCAGAGGGCTGGAACCAGGGGAATAATCATACAGATTTGGTTAGCGGTGAAGTCAACTCCTGGGAACGCCTCATTACTCAGAGCAATGAAAGAATGGAAAATACTGCATGGGAAGATAGGGATAAATCATGGAGATGGAACCAGATGGCAAAAAACAGTCTCTCAAAGAATTGGGATGATGGTGGCAATCCTTGGGCACGGGACTGTCAGGGTTTTACCCATGTGAAAGTTAATAATAGATGGGGTGATCCCTTAAATAAGTCTTGGGGCTCCAACCAGCCAGAGACAAAGAATTTGGATCATGGTGAAAATCCTTGGGAGTGTGGTCCTAGTCAATATAATGAAGCTTTAACAAAAGATCGAGGATGGAAAGATTGTGGAGGTTGGAAACAGTGTGACAGCCGTATTAACCAGAGAAATAATTTGGATTTTAGGATAAAAGGTGGCAGATGGGGAACTACGAATCACAGTGGCCAGAAGAGGGAACGGTCTCACCAATATATAGCAGGATCCCAAAGCTCAAGATTTCAAGGGAGTGATTGTCAAACAGGTGGATACTGGAGGAGGGCAAACAATAGAAAGAGGCTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

386

Amino Acids

44.79

Weight (kDa)

5.86

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014785)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02130 FvH4_7g02130
malus_domestica	MD02G1297200.v1.1
prunus_persica	Prupe.2G026900_v2.0.a1
pyrus_communis	pycom02g25040 pycom07g02040
rosa_chinensis	RchiOBHm_Chr1g0319371
rosa_laevigata	RLG00000030492
rosa_multiflora	Rmu_sc0005870.1_g000004 Rmu_sc0014506.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328530
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039400 Rh1BG036200 Rh1CG038300 Rh1DG031500
rosa_wichuraiana	Rw1G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	495
Acc36I	ACCTGC	1 cut(s)	21
AccB7I	CCANNNNNTGG	1 cut(s)	168
AciI	CCGC	2 cut(s)	112, 612
AclWI	GGATC	6 cut(s)	359, 396, 809, 873, 1071, 1084
AcoI	YGGCCR	1 cut(s)	1039
AcsI	RAATTY	1 cut(s)	859
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	123, 219, 398
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 485, 1048
AgsI	TTSAA	3 cut(s)	257, 559, 1097
AjnI	CCWGG	2 cut(s)	582, 626
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	6 cut(s)	52, 239, 470, 914, 1086, 1158
AluI	AGCT	6 cut(s)	52, 239, 470, 914, 1086, 1158
Alw26I	GTCTC	3 cut(s)	731, 845, 1062
AlwI	GGATC	6 cut(s)	359, 396, 809, 873, 1071, 1084
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	2 cut(s)	292, 1039
ApoI	RAATTY	1 cut(s)	859
ArsI	GACNNNNNNTTYG	2 cut(s)	844, 876
Asp700I	GAANNNNTTC	2 cut(s)	51, 356
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	159, 893
AsuHPI	GGTGA	6 cut(s)	71, 254, 626, 824, 884, 1052
AvaII	GGWCC	2 cut(s)	159, 893
BaeGI	GKGCMC	1 cut(s)	766
BalI	TGGCCA	1 cut(s)	1041
BamHI	GGATCC	1 cut(s)	1076
BanII	GRGCYC	1 cut(s)	839
BbsI	GAAGAC	1 cut(s)	491
BceAI	ACGGC	2 cut(s)	307, 954
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	584, 628
BciVI	GTATCC	1 cut(s)	1115
BcoDI	GTCTC	3 cut(s)	731, 845, 1062
BfaI	CTAG	1 cut(s)	897
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	1115
BlpI	GCTNAGC	1 cut(s)	1154
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	584, 628
Bme18I	GGWCC	2 cut(s)	159, 893
BmgT120I	GGNCC	2 cut(s)	159, 893
BmiI	GGNNCC	6 cut(s)	160, 353, 581, 707, 838, 1078
BmrFI	CCNGG	2 cut(s)	584, 628
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	1147
Bpu1102I	GCTNAGC	1 cut(s)	1154
BpuEI	CTTGAG	1 cut(s)	1072
Bsa29I	ATCGAT	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	1062
BsaJI	CCNNGG	6 cut(s)	167, 521, 583, 627, 758, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	1093, 1123
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 485, 1048
Bse1I	ACTGG	1 cut(s)	1130
Bse3DI	GCAATG	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	584, 628
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	6 cut(s)	167, 521, 583, 627, 758, 881
BseGI	GGATG	3 cut(s)	121, 748, 938
BseLI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 485, 1048
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	1130
BseRI	GAGGAG	3 cut(s)	81, 260, 1144
BseSI	GKGCMC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	294, 1041
BshVI	ATCGAT	1 cut(s)	363
BslFI	GGGAC	4 cut(s)	6, 27, 242, 782
BslI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 485, 1048
BsmAI	GTCTC	3 cut(s)	731, 845, 1062
BsmFI	GGGAC	4 cut(s)	6, 27, 242, 782
BsnI	GGCC	2 cut(s)	294, 1041
Bso31I	GGTCTC	1 cut(s)	1062
Bsp1286I	GDGCHC	2 cut(s)	766, 839
Bsp143I	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
Bsp1720I	GCTNAGC	1 cut(s)	1154
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	2 cut(s)	112, 612
BspANI	GGCC	2 cut(s)	294, 1041
BspCNI	CTCAG	1 cut(s)	658
BspDI	ATCGAT	1 cut(s)	363
BspLI	GGNNCC	6 cut(s)	160, 353, 581, 707, 838, 1078
BspMI	ACCTGC	1 cut(s)	21
BspPI	GGATC	6 cut(s)	359, 396, 809, 873, 1071, 1084
BspTNI	GGTCTC	1 cut(s)	1062
BsrDI	GCAATG	1 cut(s)	658
BsrI	ACTGG	1 cut(s)	1130
BssECI	CCNNGG	6 cut(s)	167, 521, 583, 627, 758, 881
BssMI	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
BssT1I	CCWWGG	4 cut(s)	167, 521, 758, 881
Bst2UI	CCWGG	2 cut(s)	584, 628
Bst4CI	ACNGT	7 cut(s)	302, 497, 725, 773, 960, 1037, 1056
Bst6I	CTCTTC	2 cut(s)	75, 1040
BstDEI	CTNAG	2 cut(s)	645, 1154
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	121, 748, 938
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	7 cut(s)	156, 367, 391, 817, 868, 928, 1079
BstMAI	GTCTC	3 cut(s)	731, 845, 1062
BstMBI	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
BstNI	CCWGG	2 cut(s)	584, 628
BstSCI	CCNGG	2 cut(s)	582, 626
BstSLI	GKGCMC	1 cut(s)	766
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	1076
BstYI	RGATCY	1 cut(s)	1076
Bsu15I	ATCGAT	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	1115
BsuRI	GGCC	2 cut(s)	294, 1041
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	121, 748, 938
BtsIMutI	CAGTG	3 cut(s)	298, 965, 1042
BveI	ACCTGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	159, 893
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	3 cut(s)	122, 218, 397
CviAII	CATG	5 cut(s)	168, 675, 696, 788, 869
CviQI	GTAC	3 cut(s)	122, 218, 397
DdeI	CTNAG	2 cut(s)	645, 1154
DpnI	GATC	7 cut(s)	155, 366, 390, 816, 867, 927, 1078
DpnII	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
DrdI	GACNNNNNNGTC	1 cut(s)	495
DseDI	GACNNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	1039
Eam1104I	CTCTTC	2 cut(s)	75, 1040
EarI	CTCTTC	2 cut(s)	75, 1040
Eco130I	CCWWGG	4 cut(s)	167, 521, 758, 881
Eco24I	GRGCYC	1 cut(s)	839
Eco31I	GGTCTC	1 cut(s)	1062
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	159, 893
Eco47III	AGCGCT	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	582, 626
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	4 cut(s)	167, 521, 758, 881
EcoT38I	GRGCYC	1 cut(s)	839
ErhI	CCWWGG	4 cut(s)	167, 521, 758, 881
FaeI	CATG	5 cut(s)	171, 678, 699, 791, 872
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	4 cut(s)	6, 27, 242, 782
FatI	CATG	5 cut(s)	167, 674, 695, 787, 868
FauI	CCCGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	128, 755, 945
FriOI	GRGCYC	1 cut(s)	839
FspBI	CTAG	1 cut(s)	897
GlaI	GCGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	1147
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	294, 1041
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	171, 678, 699, 791, 872
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	2 cut(s)	50, 912
HinfI	GANTC	3 cut(s)	233, 320, 1030
HphI	GGTGA	6 cut(s)	71, 254, 626, 824, 884, 1052
Hpy166II	GTNNAC	2 cut(s)	122, 622
Hpy188I	TCNGA	3 cut(s)	103, 325, 648
Hpy188III	TCNNGA	7 cut(s)	44, 368, 376, 392, 407, 503, 1089
Hpy8I	GTNNAC	2 cut(s)	122, 622
HpyAV	CCTTC	4 cut(s)	108, 169, 373, 419
HpyCH4III	ACNGT	7 cut(s)	302, 497, 725, 773, 960, 1037, 1056
HpyCH4V	TGCA	3 cut(s)	147, 541, 674
HpyF3I	CTNAG	2 cut(s)	645, 1154
Hsp92II	CATG	5 cut(s)	171, 678, 699, 791, 872
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
LmnI	GCTCC	2 cut(s)	409, 842
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	897
MaeIII	GTNAC	3 cut(s)	302, 530, 962
MalI	GATC	7 cut(s)	155, 366, 390, 816, 867, 927, 1078
MboI	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
MboII	GAAGA	5 cut(s)	28, 62, 491, 692, 1057
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	1076
MhlI	GDGCHC	2 cut(s)	766, 839
MlsI	TGGCCA	1 cut(s)	1041
MluCI	AATT	5 cut(s)	193, 223, 736, 859, 988
MluNI	TGGCCA	1 cut(s)	1041
MmeI	TCCRAC	2 cut(s)	864, 932
Mox20I	TGGCCA	1 cut(s)	1041
MroXI	GAANNNNTTC	2 cut(s)	51, 356
MscI	TGGCCA	1 cut(s)	1041
MseI	TTAA	4 cut(s)	798, 821, 917, 975
MslI	CAYNNNNRTG	1 cut(s)	700
Msp20I	TGGCCA	1 cut(s)	1041
MspA1I	CMGCKG	2 cut(s)	239, 1158
MspR9I	CCNGG	2 cut(s)	584, 628
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	584, 628
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
NlaIII	CATG	5 cut(s)	171, 678, 699, 791, 872
NlaIV	GGNNCC	6 cut(s)	160, 353, 581, 707, 838, 1078
NmuCI	GTSAC	3 cut(s)	302, 530, 962
PdmI	GAANNNNTTC	2 cut(s)	51, 356
PfeI	GAWTC	3 cut(s)	233, 320, 1030
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	582, 626
PspGI	CCWGG	2 cut(s)	582, 626
PspN4I	GGNNCC	6 cut(s)	160, 353, 581, 707, 838, 1078
PspPI	GGNCC	2 cut(s)	159, 893
PsuI	RGATCY	1 cut(s)	1076
PsyI	GACNNNGTC	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	239, 1158
RsaI	GTAC	3 cut(s)	123, 219, 398
RsaNI	GTAC	3 cut(s)	122, 218, 397
RseI	CAYNNNNRTG	1 cut(s)	700
SaqAI	TTAA	4 cut(s)	798, 821, 917, 975
Sau3AI	GATC	7 cut(s)	153, 364, 388, 814, 865, 925, 1076
Sau96I	GGNCC	2 cut(s)	159, 893
ScaI	AGTACT	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	584, 628
SduI	GDGCHC	2 cut(s)	766, 839
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	2 cut(s)	159, 893
SmiMI	CAYNNNNRTG	1 cut(s)	700
SmlI	CTYRAG	1 cut(s)	1087
SmoI	CTYRAG	1 cut(s)	1087
Sse9I	AATT	5 cut(s)	193, 223, 736, 859, 988
SsiI	CCGC	2 cut(s)	112, 612
SspMI	CTAG	1 cut(s)	897
StyD4I	CCNGG	2 cut(s)	582, 626
StyI	CCWWGG	4 cut(s)	167, 521, 758, 881
TaaI	ACNGT	7 cut(s)	302, 497, 725, 773, 960, 1037, 1056
TaqI	TCGA	2 cut(s)	363, 928
TasI	AATT	5 cut(s)	193, 223, 736, 859, 988
TatI	WGTACW	2 cut(s)	217, 396
TfiI	GAWTC	3 cut(s)	233, 320, 1030
Tru1I	TTAA	4 cut(s)	798, 821, 917, 975
Tru9I	TTAA	4 cut(s)	798, 821, 917, 975
TscAI	CASTG	3 cut(s)	305, 965, 1042
TseFI	GTSAC	3 cut(s)	302, 530, 962
Tsp45I	GTSAC	3 cut(s)	302, 530, 962
TspDTI	ATGAA	5 cut(s)	349, 354, 579, 669, 924
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	305, 965, 1042
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	159, 893
XapI	RAATTY	1 cut(s)	859
XmnI	GAANNNNTTC	2 cut(s)	51, 356
XspI	CTAG	1 cut(s)	897
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.