Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005870.1

Orthogroup ID

OG0014785

Physical Location & Seq

Genomic Coordinates Forward (+)

10628 .. 12521

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005870.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atgggtaaatggggacatcgtcccaatcgcaggttcttccgtcaagaaaagcttccaagcccattccctcttccttttcaccctcaacctcctcccccttcagagttttggcgggatggtgtacctcaatgggaaaaggaatactgcactttgatcgggtccataccatggtggaaggtggtagatgccaagaattatatgtatggcagtagtaatgtactcaattgggacgattcagctggtgaggaggcatttcaaaatgcgaaaaagcgcttttgggcagacatcaacagcctccactgtgacatctccctacctgattcagatatttatattgatgaaatagattggaaccctttcatcgatcctgatatcgtgaaggaagtggatcgtgagtactttgctcctgatgatggagatggagatggagaaggaaatgacaagttggggcagaaaaagaggaagacagaacattcagctattattcctttagatggacataactgtcttccagataatcctacaaatccttgggaatgtgacaatatgcaaagtagtggggatttgaaaaatgaagcagagggctggaaccaggggaataatcatacagatttggttagcggtgaagtcaactcctgggaacgcctcattactcagagcaatgaaaaaatggaaaatactgcatgggaagatagggataaatcatggagatggaaccagatggcaaaaaacagtctctcaaagaattgggatgatggtggcaatccttgggcacaagactgtcagggttttacccatgtgaaagttaataatagatggggtgatcccttaaataagtcttggggctccaaccagccggagacaaagaatttggatcatggtgaaaatccttgggagtgtggtcctagtcaatataatgaagctttaacaaaagatcgaggatggaaagattgtggaggttggaaacagtgtgacagccgtattaaccagagaaataatttggattttaggataaaaggtagcagatggggaactacaaatcacagtggccagaagagggaacggtcttaccagtatatagcaggatcccaaagctcaagatttcaagggagtgattgtcaaacaggtggatactggaggagggcaaacaatagaaagaggctcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

389

Amino Acids

45.09

Weight (kDa)

5.59

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014785)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02130 FvH4_7g02130
malus_domestica	MD02G1297200.v1.1
prunus_persica	Prupe.2G026900_v2.0.a1
pyrus_communis	pycom02g25040 pycom07g02040
rosa_chinensis	RchiOBHm_Chr1g0319371
rosa_laevigata	RLG00000030492
rosa_multiflora	Rmu_sc0005870.1_g000004 Rmu_sc0014506.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328530
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039400 Rh1BG036200 Rh1CG038300 Rh1DG031500
rosa_wichuraiana	Rw1G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	21
AccB7I	CCANNNNNTGG	1 cut(s)	168
AciI	CCGC	2 cut(s)	112, 621
AclWI	GGATC	6 cut(s)	359, 396, 818, 882, 1080, 1093
AcoI	YGGCCR	1 cut(s)	1048
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	123, 219, 398
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 494, 1057
AgsI	TTSAA	3 cut(s)	257, 568, 1106
AjnI	CCWGG	2 cut(s)	591, 635
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	6 cut(s)	52, 239, 479, 923, 1095, 1167
AluI	AGCT	6 cut(s)	52, 239, 479, 923, 1095, 1167
Alw26I	GTCTC	2 cut(s)	740, 854
AlwI	GGATC	6 cut(s)	359, 396, 818, 882, 1080, 1093
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	1 cut(s)	1048
ApoI	RAATTY	1 cut(s)	868
ArsI	GACNNNNNNTTYG	2 cut(s)	853, 885
Asp700I	GAANNNNTTC	2 cut(s)	51, 356
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	159, 902
AsuHPI	GGTGA	5 cut(s)	71, 254, 635, 833, 893
AvaII	GGWCC	2 cut(s)	159, 902
BaeGI	GKGCMC	1 cut(s)	775
BalI	TGGCCA	1 cut(s)	1050
BamHI	GGATCC	1 cut(s)	1085
BanII	GRGCYC	1 cut(s)	848
BbsI	GAAGAC	2 cut(s)	470, 500
BceAI	ACGGC	1 cut(s)	963
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	593, 637
BciVI	GTATCC	1 cut(s)	1124
BcoDI	GTCTC	2 cut(s)	740, 854
BfaI	CTAG	1 cut(s)	906
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	1124
BlpI	GCTNAGC	1 cut(s)	1163
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	593, 637
Bme18I	GGWCC	2 cut(s)	159, 902
BmgT120I	GGNCC	2 cut(s)	159, 902
BmiI	GGNNCC	6 cut(s)	160, 353, 590, 716, 847, 1087
BmrFI	CCNGG	2 cut(s)	593, 637
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	470, 500
BpmI	CTGGAG	1 cut(s)	1156
Bpu1102I	GCTNAGC	1 cut(s)	1163
BpuEI	CTTGAG	1 cut(s)	1081
Bsa29I	ATCGAT	1 cut(s)	363
BsaJI	CCNNGG	6 cut(s)	167, 530, 592, 636, 767, 890
BsaXI	ACNNNNNCTCC	2 cut(s)	1102, 1132
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 494, 1057
Bse1I	ACTGG	2 cut(s)	1072, 1139
Bse3DI	GCAATG	1 cut(s)	667
BseBI	CCWGG	2 cut(s)	593, 637
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	6 cut(s)	167, 530, 592, 636, 767, 890
BseGI	GGATG	3 cut(s)	121, 757, 947
BseLI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 494, 1057
BseMI	GCAATG	1 cut(s)	667
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	2 cut(s)	1072, 1139
BseRI	GAGGAG	3 cut(s)	81, 260, 1153
BseSI	GKGCMC	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	1050
BshVI	ATCGAT	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	857
BslFI	GGGAC	3 cut(s)	6, 27, 242
BslI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 494, 1057
BsmAI	GTCTC	2 cut(s)	740, 854
BsmFI	GGGAC	3 cut(s)	6, 27, 242
BsnI	GGCC	1 cut(s)	1050
Bsp1286I	GDGCHC	2 cut(s)	775, 848
Bsp143I	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
Bsp1720I	GCTNAGC	1 cut(s)	1163
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	2 cut(s)	112, 621
BspANI	GGCC	1 cut(s)	1050
BspCNI	CTCAG	1 cut(s)	667
BspDI	ATCGAT	1 cut(s)	363
BspLI	GGNNCC	6 cut(s)	160, 353, 590, 716, 847, 1087
BspMI	ACCTGC	1 cut(s)	21
BspPI	GGATC	6 cut(s)	359, 396, 818, 882, 1080, 1093
BsrDI	GCAATG	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	1072, 1139
BssECI	CCNNGG	6 cut(s)	167, 530, 592, 636, 767, 890
BssMI	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
BssT1I	CCWWGG	4 cut(s)	167, 530, 767, 890
Bst2UI	CCWGG	2 cut(s)	593, 637
Bst4CI	ACNGT	7 cut(s)	302, 506, 734, 782, 969, 1046, 1065
Bst6I	CTCTTC	2 cut(s)	75, 1049
BstDEI	CTNAG	2 cut(s)	654, 1163
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	121, 757, 947
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	7 cut(s)	156, 367, 391, 826, 877, 937, 1088
BstMAI	GTCTC	2 cut(s)	740, 854
BstMBI	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
BstNI	CCWGG	2 cut(s)	593, 637
BstSCI	CCNGG	2 cut(s)	591, 635
BstSLI	GKGCMC	1 cut(s)	775
BstV2I	GAAGAC	2 cut(s)	470, 500
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
Bsu15I	ATCGAT	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	1124
BsuRI	GGCC	1 cut(s)	1050
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	121, 757, 947
BtsIMutI	CAGTG	3 cut(s)	298, 974, 1051
BveI	ACCTGC	1 cut(s)	21
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	159, 902
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	3 cut(s)	122, 218, 397
CviAII	CATG	5 cut(s)	168, 684, 705, 797, 878
CviQI	GTAC	3 cut(s)	122, 218, 397
DdeI	CTNAG	2 cut(s)	654, 1163
DpnI	GATC	7 cut(s)	155, 366, 390, 825, 876, 936, 1087
DpnII	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
DrdI	GACNNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	504
EaeI	YGGCCR	1 cut(s)	1048
Eam1104I	CTCTTC	2 cut(s)	75, 1049
EarI	CTCTTC	2 cut(s)	75, 1049
Eco130I	CCWWGG	4 cut(s)	167, 530, 767, 890
Eco24I	GRGCYC	1 cut(s)	848
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	159, 902
Eco47III	AGCGCT	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	591, 635
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	4 cut(s)	167, 530, 767, 890
EcoT38I	GRGCYC	1 cut(s)	848
ErhI	CCWWGG	4 cut(s)	167, 530, 767, 890
FaeI	CATG	5 cut(s)	171, 687, 708, 800, 881
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	3 cut(s)	6, 27, 242
FatI	CATG	5 cut(s)	167, 683, 704, 796, 877
FauI	CCCGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	128, 764, 954
FriOI	GRGCYC	1 cut(s)	848
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	1156
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	1050
HapII	CCGG	1 cut(s)	857
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	171, 687, 708, 800, 881
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	2 cut(s)	50, 921
HinfI	GANTC	2 cut(s)	233, 320
HpaII	CCGG	1 cut(s)	857
HphI	GGTGA	5 cut(s)	71, 254, 635, 833, 893
Hpy166II	GTNNAC	2 cut(s)	122, 631
Hpy188I	TCNGA	3 cut(s)	103, 325, 657
Hpy188III	TCNNGA	7 cut(s)	44, 368, 376, 392, 407, 512, 1098
Hpy8I	GTNNAC	2 cut(s)	122, 631
HpyAV	CCTTC	4 cut(s)	108, 169, 373, 425
HpyCH4III	ACNGT	7 cut(s)	302, 506, 734, 782, 969, 1046, 1065
HpyCH4V	TGCA	3 cut(s)	147, 550, 683
HpyF3I	CTNAG	2 cut(s)	654, 1163
Hsp92II	CATG	5 cut(s)	171, 687, 708, 800, 881
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
LmnI	GCTCC	2 cut(s)	409, 851
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	906
MaeIII	GTNAC	3 cut(s)	302, 539, 971
MalI	GATC	7 cut(s)	155, 366, 390, 825, 876, 936, 1087
MboI	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
MboII	GAAGA	6 cut(s)	28, 62, 475, 500, 701, 1066
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	1085
MhlI	GDGCHC	2 cut(s)	775, 848
MlsI	TGGCCA	1 cut(s)	1050
MluCI	AATT	5 cut(s)	193, 223, 745, 868, 997
MluNI	TGGCCA	1 cut(s)	1050
MmeI	TCCRAC	2 cut(s)	873, 941
Mox20I	TGGCCA	1 cut(s)	1050
MroXI	GAANNNNTTC	2 cut(s)	51, 356
MscI	TGGCCA	1 cut(s)	1050
MseI	TTAA	4 cut(s)	807, 830, 926, 984
MslI	CAYNNNNRTG	1 cut(s)	709
Msp20I	TGGCCA	1 cut(s)	1050
MspA1I	CMGCKG	2 cut(s)	239, 1167
MspI	CCGG	1 cut(s)	857
MspR9I	CCNGG	2 cut(s)	593, 637
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	593, 637
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
NlaIII	CATG	5 cut(s)	171, 687, 708, 800, 881
NlaIV	GGNNCC	6 cut(s)	160, 353, 590, 716, 847, 1087
NmuCI	GTSAC	3 cut(s)	302, 539, 971
PdmI	GAANNNNTTC	2 cut(s)	51, 356
PfeI	GAWTC	2 cut(s)	233, 320
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	591, 635
PspGI	CCWGG	2 cut(s)	591, 635
PspN4I	GGNNCC	6 cut(s)	160, 353, 590, 716, 847, 1087
PspPI	GGNCC	2 cut(s)	159, 902
PsuI	RGATCY	1 cut(s)	1085
PsyI	GACNNNGTC	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	239, 1167
RsaI	GTAC	3 cut(s)	123, 219, 398
RsaNI	GTAC	3 cut(s)	122, 218, 397
RseI	CAYNNNNRTG	1 cut(s)	709
SaqAI	TTAA	4 cut(s)	807, 830, 926, 984
Sau3AI	GATC	7 cut(s)	153, 364, 388, 823, 874, 934, 1085
Sau96I	GGNCC	2 cut(s)	159, 902
ScaI	AGTACT	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	593, 637
SduI	GDGCHC	2 cut(s)	775, 848
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	2 cut(s)	159, 902
SmiMI	CAYNNNNRTG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	1096
SmoI	CTYRAG	1 cut(s)	1096
Sse9I	AATT	5 cut(s)	193, 223, 745, 868, 997
SsiI	CCGC	2 cut(s)	112, 621
SspMI	CTAG	1 cut(s)	906
StyD4I	CCNGG	2 cut(s)	591, 635
StyI	CCWWGG	4 cut(s)	167, 530, 767, 890
TaaI	ACNGT	7 cut(s)	302, 506, 734, 782, 969, 1046, 1065
TaqI	TCGA	2 cut(s)	363, 937
TasI	AATT	5 cut(s)	193, 223, 745, 868, 997
TatI	WGTACW	2 cut(s)	217, 396
TfiI	GAWTC	2 cut(s)	233, 320
Tru1I	TTAA	4 cut(s)	807, 830, 926, 984
Tru9I	TTAA	4 cut(s)	807, 830, 926, 984
TscAI	CASTG	3 cut(s)	305, 974, 1051
TseFI	GTSAC	3 cut(s)	302, 539, 971
Tsp45I	GTSAC	3 cut(s)	302, 539, 971
TspDTI	ATGAA	5 cut(s)	349, 354, 588, 678, 933
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	305, 974, 1051
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	159, 902
XapI	RAATTY	1 cut(s)	868
XmnI	GAANNNNTTC	2 cut(s)	51, 356
XspI	CTAG	1 cut(s)	906
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.