Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014785

Physical Location & Seq

Genomic Coordinates Forward (+)

5763938 .. 5766838

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G003150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGTAAATGGGGACATCGTCCCAATCGCCGGTTCTTCCGTCAAGAAAAGCTTCCAAGCCCATTCCCTCTTCCTTTTCACCCTCAACCTCCTCCCCCTTCAGAGTTTTGGCGGGATGGTGTACCTCAATGGGAAAAGGAATACTGCACTTTGATCGGGTCCATACCATGGTGGAAGGTGGTAGATGCCAAGAATTATATGTATGGCAGTAGTAATGTACTCAATTGGGACGATTCAGCTGGTGAGGAGGCATTTCAAAATGCGAAAAAGCGCTTTTGGGCAGACATCAACAGCCTCCACTGTGACATCTCTCTACCTGATTCAGATATTTATATTGATGAAATAGATTGGAACCCTTTCATCGATCCTGATATCGTGAAGGAAGTGGATCGTGAGTACTTTGCTCCTGATGATGGAGATGGAGAAGGAAATGACAAGTTGGGGCAGAAAAAGAGGAAGACAGAACATTCAGCTATTATTCCTTTAGATGGACATAACTGTCTTCCAGATAATCCTACAAATCCTTGGGAATGTGACAATATGCAAAGTAGTGGGGATTTGAAAAATGAAGCAGAGGGCTGGAACCAGGGGAATAATCATACAGATTTGGTTAGCGGTGAAGTCAACTCCTGGGAACGCCTCATTACTCAGAGCAATGAAAAAATGGAAAATACTGCATGGGAAGATAGGGATAAATCATGGAGATGGAACCAGATGGCAAAAAACAGTCTCTCAAAGAATTGGGATGATGGTGGCAATCCATGGGCACGGGACTGTCAGGGTTTTACCCATGTGAAAGTTAATAATAGATGGGGTGATCCCTTAAATAAGTCTTGGGGCTCCAACCAGCCGAAGACAAAGAATTTGGATCATGGTGAAAATCCTTGGGAGTGTGGTCCTAGTCAATATAATGAAGCTTTAACAAAAGATCGAGGATGGAAAGATTGTGGAGGTTGGAAACAGTGTGACAGCCGTATTAACCAGAGAAATAATTTGGATTTTAGGATAAAAGGTAGCAGATGGGGAACTACGAATCACAGTGGCCAGAAGAGGGAACGGTCTCACCAATATATAGCAGGATCCCAAAGCACAAGATTTCAAGGGAGTGATTGTCAAACAGGTGGATACTGGAGGAGGGCAAACAATAGAAAGAGGCTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

387

Amino Acids

44.93

Weight (kDa)

6.1

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014785)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02130 FvH4_7g02130
malus_domestica	MD02G1297200.v1.1
prunus_persica	Prupe.2G026900_v2.0.a1
pyrus_communis	pycom02g25040 pycom07g02040
rosa_chinensis	RchiOBHm_Chr1g0319371
rosa_laevigata	RLG00000030492
rosa_multiflora	Rmu_sc0005870.1_g000004 Rmu_sc0014506.1_g000002
rosa_roxburghii	Rroxscaffold_4G00328530
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039400 Rh1BG036200 Rh1CG038300 Rh1DG031500
rosa_wichuraiana	Rw1G003150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	498
AccB7I	CCANNNNNTGG	1 cut(s)	168
AciI	CCGC	2 cut(s)	112, 615
AclWI	GGATC	6 cut(s)	359, 396, 812, 876, 1074, 1087
AcoI	YGGCCR	1 cut(s)	1042
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	123, 219, 398
AfeI	AGCGCT	1 cut(s)	272
AfiI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 488, 1051
AgsI	TTSAA	3 cut(s)	257, 562, 1100
AjnI	CCWGG	2 cut(s)	585, 629
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	5 cut(s)	52, 239, 473, 917, 1161
AluI	AGCT	5 cut(s)	52, 239, 473, 917, 1161
Alw26I	GTCTC	2 cut(s)	734, 1065
AlwI	GGATC	6 cut(s)	359, 396, 812, 876, 1074, 1087
Aor51HI	AGCGCT	1 cut(s)	272
AoxI	GGCC	1 cut(s)	1042
ApoI	RAATTY	1 cut(s)	862
ArsI	GACNNNNNNTTYG	2 cut(s)	847, 879
Asp700I	GAANNNNTTC	2 cut(s)	51, 356
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	159, 896
AsuHPI	GGTGA	6 cut(s)	71, 254, 629, 827, 887, 1055
AvaII	GGWCC	2 cut(s)	159, 896
BaeGI	GKGCMC	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	1044
BamHI	GGATCC	1 cut(s)	1079
BanII	GRGCYC	1 cut(s)	842
BbsI	GAAGAC	3 cut(s)	464, 494, 860
BceAI	ACGGC	1 cut(s)	957
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	587, 631
BciVI	GTATCC	1 cut(s)	1118
BcoDI	GTCTC	2 cut(s)	734, 1065
BfaI	CTAG	1 cut(s)	900
BfoI	RGCGCY	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	1118
BlpI	GCTNAGC	1 cut(s)	1157
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	587, 631
Bme18I	GGWCC	2 cut(s)	159, 896
BmgT120I	GGNCC	2 cut(s)	159, 896
BmiI	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
BmrFI	CCNGG	2 cut(s)	587, 631
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	3 cut(s)	464, 494, 860
BpmI	CTGGAG	1 cut(s)	1150
Bpu1102I	GCTNAGC	1 cut(s)	1157
Bsa29I	ATCGAT	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	1065
BsaJI	CCNNGG	6 cut(s)	167, 524, 586, 630, 761, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	1096, 1126
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 488, 1051
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	1133
Bse3DI	GCAATG	1 cut(s)	661
BseBI	CCWGG	2 cut(s)	587, 631
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	6 cut(s)	167, 524, 586, 630, 761, 884
BseGI	GGATG	3 cut(s)	121, 751, 941
BseLI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 488, 1051
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	1133
BseRI	GAGGAG	3 cut(s)	81, 260, 1147
BseSI	GKGCMC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	1044
BshVI	ATCGAT	1 cut(s)	363
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	4 cut(s)	6, 27, 242, 785
BslI	CCNNNNNNNGG	5 cut(s)	30, 168, 413, 488, 1051
BsmAI	GTCTC	2 cut(s)	734, 1065
BsmFI	GGGAC	4 cut(s)	6, 27, 242, 785
BsnI	GGCC	1 cut(s)	1044
Bso31I	GGTCTC	1 cut(s)	1065
Bsp1286I	GDGCHC	2 cut(s)	769, 842
Bsp143I	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
Bsp1720I	GCTNAGC	1 cut(s)	1157
Bsp19I	CCATGG	2 cut(s)	167, 761
BspACI	CCGC	2 cut(s)	112, 615
BspANI	GGCC	1 cut(s)	1044
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	363
BspLI	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
BspPI	GGATC	6 cut(s)	359, 396, 812, 876, 1074, 1087
BspTNI	GGTCTC	1 cut(s)	1065
BsrDI	GCAATG	1 cut(s)	661
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	1133
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	6 cut(s)	167, 524, 586, 630, 761, 884
BssMI	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
BssT1I	CCWWGG	4 cut(s)	167, 524, 761, 884
Bst2UI	CCWGG	2 cut(s)	587, 631
Bst4CI	ACNGT	7 cut(s)	302, 500, 728, 776, 963, 1040, 1059
Bst6I	CTCTTC	2 cut(s)	75, 1043
BstDEI	CTNAG	2 cut(s)	648, 1157
BstDSI	CCRYGG	2 cut(s)	167, 761
BstF5I	GGATG	3 cut(s)	121, 751, 941
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	7 cut(s)	156, 367, 391, 820, 871, 931, 1082
BstMAI	GTCTC	2 cut(s)	734, 1065
BstMBI	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
BstNI	CCWGG	2 cut(s)	587, 631
BstSCI	CCNGG	2 cut(s)	585, 629
BstSLI	GKGCMC	1 cut(s)	769
BstV2I	GAAGAC	3 cut(s)	464, 494, 860
BstX2I	RGATCY	1 cut(s)	1079
BstYI	RGATCY	1 cut(s)	1079
Bsu15I	ATCGAT	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	1118
BsuRI	GGCC	1 cut(s)	1044
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	2 cut(s)	167, 761
BtsCI	GGATG	3 cut(s)	121, 751, 941
BtsIMutI	CAGTG	3 cut(s)	298, 968, 1045
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	159, 896
ClaI	ATCGAT	1 cut(s)	363
Csp6I	GTAC	3 cut(s)	122, 218, 397
CviAII	CATG	6 cut(s)	168, 678, 699, 762, 791, 872
CviQI	GTAC	3 cut(s)	122, 218, 397
DdeI	CTNAG	2 cut(s)	648, 1157
DpnI	GATC	7 cut(s)	155, 366, 390, 819, 870, 930, 1081
DpnII	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
DrdI	GACNNNNNNGTC	1 cut(s)	498
DseDI	GACNNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	1042
Eam1104I	CTCTTC	2 cut(s)	75, 1043
EarI	CTCTTC	2 cut(s)	75, 1043
Eco130I	CCWWGG	4 cut(s)	167, 524, 761, 884
Eco24I	GRGCYC	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	1065
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	159, 896
Eco47III	AGCGCT	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	585, 629
EcoRV	GATATC	1 cut(s)	373
EcoT14I	CCWWGG	4 cut(s)	167, 524, 761, 884
EcoT38I	GRGCYC	1 cut(s)	842
ErhI	CCWWGG	4 cut(s)	167, 524, 761, 884
FaeI	CATG	6 cut(s)	171, 681, 702, 765, 794, 875
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	4 cut(s)	6, 27, 242, 785
FatI	CATG	6 cut(s)	167, 677, 698, 761, 790, 871
FauI	CCCGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	128, 758, 948
FriOI	GRGCYC	1 cut(s)	842
FspBI	CTAG	1 cut(s)	900
GlaI	GCGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	1150
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	1044
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	6 cut(s)	171, 681, 702, 765, 794, 875
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HindIII	AAGCTT	2 cut(s)	50, 915
HinfI	GANTC	3 cut(s)	233, 320, 1033
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	6 cut(s)	71, 254, 629, 827, 887, 1055
Hpy166II	GTNNAC	2 cut(s)	122, 625
Hpy188I	TCNGA	3 cut(s)	103, 325, 651
Hpy188III	TCNNGA	6 cut(s)	44, 368, 376, 392, 407, 506
Hpy8I	GTNNAC	2 cut(s)	122, 625
HpyAV	CCTTC	4 cut(s)	108, 169, 373, 419
HpyCH4III	ACNGT	7 cut(s)	302, 500, 728, 776, 963, 1040, 1059
HpyCH4V	TGCA	3 cut(s)	147, 544, 677
HpyF3I	CTNAG	2 cut(s)	648, 1157
Hsp92II	CATG	6 cut(s)	171, 681, 702, 765, 794, 875
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
LmnI	GCTCC	2 cut(s)	409, 845
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	900
MaeIII	GTNAC	3 cut(s)	302, 533, 965
MalI	GATC	7 cut(s)	155, 366, 390, 819, 870, 930, 1081
MboI	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
MboII	GAAGA	7 cut(s)	28, 62, 469, 494, 695, 865, 1060
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	1079
MhlI	GDGCHC	2 cut(s)	769, 842
MlsI	TGGCCA	1 cut(s)	1044
MluCI	AATT	5 cut(s)	193, 223, 739, 862, 991
MluNI	TGGCCA	1 cut(s)	1044
MmeI	TCCRAC	2 cut(s)	867, 935
Mox20I	TGGCCA	1 cut(s)	1044
MroXI	GAANNNNTTC	2 cut(s)	51, 356
MscI	TGGCCA	1 cut(s)	1044
MseI	TTAA	4 cut(s)	801, 824, 920, 978
MslI	CAYNNNNRTG	1 cut(s)	703
Msp20I	TGGCCA	1 cut(s)	1044
MspA1I	CMGCKG	2 cut(s)	239, 1161
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	2 cut(s)	587, 631
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	2 cut(s)	587, 631
NcoI	CCATGG	2 cut(s)	167, 761
NdeII	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
NlaIII	CATG	6 cut(s)	171, 681, 702, 765, 794, 875
NlaIV	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
NmuCI	GTSAC	3 cut(s)	302, 533, 965
PdmI	GAANNNNTTC	2 cut(s)	51, 356
PfeI	GAWTC	3 cut(s)	233, 320, 1033
PflFI	GACNNNGTC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	585, 629
PspGI	CCWGG	2 cut(s)	585, 629
PspN4I	GGNNCC	6 cut(s)	160, 353, 584, 710, 841, 1081
PspPI	GGNCC	2 cut(s)	159, 896
PsuI	RGATCY	1 cut(s)	1079
PsyI	GACNNNGTC	1 cut(s)	18
PvuII	CAGCTG	2 cut(s)	239, 1161
RsaI	GTAC	3 cut(s)	123, 219, 398
RsaNI	GTAC	3 cut(s)	122, 218, 397
RseI	CAYNNNNRTG	1 cut(s)	703
SaqAI	TTAA	4 cut(s)	801, 824, 920, 978
Sau3AI	GATC	7 cut(s)	153, 364, 388, 817, 868, 928, 1079
Sau96I	GGNCC	2 cut(s)	159, 896
ScaI	AGTACT	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	587, 631
SduI	GDGCHC	2 cut(s)	769, 842
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	2 cut(s)	159, 896
SmiMI	CAYNNNNRTG	1 cut(s)	703
Sse9I	AATT	5 cut(s)	193, 223, 739, 862, 991
SsiI	CCGC	2 cut(s)	112, 615
SspMI	CTAG	1 cut(s)	900
StyD4I	CCNGG	2 cut(s)	585, 629
StyI	CCWWGG	4 cut(s)	167, 524, 761, 884
TaaI	ACNGT	7 cut(s)	302, 500, 728, 776, 963, 1040, 1059
TaqI	TCGA	2 cut(s)	363, 931
TasI	AATT	5 cut(s)	193, 223, 739, 862, 991
TatI	WGTACW	2 cut(s)	217, 396
TfiI	GAWTC	3 cut(s)	233, 320, 1033
Tru1I	TTAA	4 cut(s)	801, 824, 920, 978
Tru9I	TTAA	4 cut(s)	801, 824, 920, 978
TscAI	CASTG	3 cut(s)	305, 968, 1045
TseFI	GTSAC	3 cut(s)	302, 533, 965
Tsp45I	GTSAC	3 cut(s)	302, 533, 965
TspDTI	ATGAA	5 cut(s)	349, 354, 582, 672, 927
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	305, 968, 1045
Tth111I	GACNNNGTC	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	159, 896
XapI	RAATTY	1 cut(s)	862
XmnI	GAANNNNTTC	2 cut(s)	51, 356
XspI	CTAG	1 cut(s)	900
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.