Prupe.2G026900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014785
Physical Location & Seq
Forward (+)
2774115 .. 2776962
2848 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G026900.1

Sequence Viewer

Length: 1164 bp
ATGGGCAATTGGAGACATCGTCCCCCTCGTAGAATCTACCGTCAAGAAAAGCTTCCAAGCGTATACCCTCTACCATATCACCCCGAACCTCCTCCCCCTTCAGGGTTTTGTAAGGATGGTATACCTTATTGGGAAAAGCAATTCTGCACTTTGGTTGGGTCCATACCATGGTGGAAGGTAGCAGATGCCAAGAGGTATATGTATGGAAATAGTAATGTACTCAATTGGAACGATTCAGCTGGTGAGGAGGCATTTCAAAATGCAAAACAGCGCTTTTGGGCGGACATCAATGGCCTCTCCTGTGACATCTCTTTGCCTGATCCAAGTATTTATATTGATGAAATAGATTGGTACCCTCTTATTGATCCCGAACTCATGAAGGAAGTGGATTGTGAGTACTTTGCTCCTGATGAGGAAGAAGGGAATGGCAAGTTCGGGCGAAGAAACAAGAACACAAAATATTCAGCTGTTGTTCCTCCGGATGGACATAACAGGGTTCCAAATAACAGCAGAAATCCTTGGGAATGTGACAACATTCAGGGTAGTGGAGATTTGAAAAACACAGTTCAGGGCAGGAACCAGTGGAATACTAATGGTGACAACCCTTGGGAAAGTGGAAGTACTCAGGGCAATGGAAGTATGGAGAAGAATGCATGGGAAGATAGCAGGGATAAGTCATGGGGATGGAACCAGATGGGAGATAATATCACTCTGTCAAAGGGTTGGGATAATGATGTTAAACCTTGGGAAGGTGGCTGTCAGGGTGTTGCGTCTGTGGAAGGTAATAGATGGGTTGATCCAATATGTAAGTCTTGGGGCTACAACCAGCAGGAGTCAAAGAATGTGGATCATAGTGAGAATCGTTGGGAGGGCGGTCCTAGTCAAAACAATAAATCTCTAAAAGATAGAGGGTGGAGAGATCGTGGAGGAGATGAGTGGGGTTGGAAACAGTGGGGGAGCCAGAATAACCAGAAAAATAATTTGGATTTTAGGATAGTAAACAGTGGTTCGGGAGCTAGGAACCAGGGTGGCCATAAGAGGGAACGTCCTCACGAGTATATATCAGGCTATAAAAGCTCAAGATTTCAAGGGAGTGATTATCAAACAGGTAATTGCTGGAGTAGGGGAAATAATAGAAAGAGGGTCAGTTTTGCCCGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.55

Weight (kDa)

7.0

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014785)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g02130 FvH4_7g02130
malus_domestica MD02G1297200.v1.1
prunus_persica Prupe.2G026900_v2.0.a1
pyrus_communis pycom02g25040 pycom07g02040
rosa_chinensis RchiOBHm_Chr1g0319371
rosa_laevigata RLG00000030492
rosa_multiflora Rmu_sc0005870.1_g000004 Rmu_sc0014506.1_g000002
rosa_roxburghii Rroxscaffold_4G00328530
rosa_rugosa Rorug01G0027200
rosa_samantha Rh1AG039400 Rh1BG036200 Rh1CG038300 Rh1DG031500
rosa_wichuraiana Rw1G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 168
AccI GTMKAC 2 cut(s) 63, 121
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 2 cut(s) 281, 873
AclWI GGATC 4 cut(s) 314, 359, 791, 855
AcoI YGGCCR 1 cut(s) 1030
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 4 cut(s) 219, 353, 398, 622
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 6 cut(s) 101, 102, 168, 482, 749, 1039
AgsI TTSAA 3 cut(s) 257, 556, 1088
AjnI CCWGG 1 cut(s) 1023
AjuI GAANNNNNNNTTGG 2 cut(s) 965, 997
AluBI AGCT 5 cut(s) 52, 239, 467, 1016, 1077
AluI AGCT 5 cut(s) 52, 239, 467, 1016, 1077
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 4 cut(s) 314, 359, 791, 855
Ama87I CYCGRG 1 cut(s) 1155
Aor13HI TCCGGA 1 cut(s) 478
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 2 cut(s) 292, 1030
Asp700I GAANNNNTTC 1 cut(s) 51
Asp718I GGTACC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 159, 875
AsuHPI GGTGA 3 cut(s) 71, 254, 608
AvaI CYCGRG 1 cut(s) 1155
AvaII GGWCC 2 cut(s) 159, 875
BalI TGGCCA 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 351
BauI CACGAG 1 cut(s) 1052
BccI CCATC 5 cut(s) 110, 476, 678, 688, 783
BciT130I CCWGG 1 cut(s) 1025
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 2 cut(s) 879, 1017
BfoI RGCGCY 1 cut(s) 274
BmcAI AGTACT 2 cut(s) 398, 622
Bme1390I CCNGG 1 cut(s) 1025
Bme18I GGWCC 2 cut(s) 159, 875
BmeT110I CYCGRG 1 cut(s) 1155
BmgT120I GGNCC 2 cut(s) 159, 875
BmiI GGNNCC 7 cut(s) 160, 353, 498, 578, 689, 959, 1022
BmrFI CCNGG 1 cut(s) 1025
BmsI GCATC 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 1138
BpuEI CTTGAG 1 cut(s) 1063
BsaJI CCNNGG 5 cut(s) 167, 518, 605, 743, 1024
BsaWI WCCGGW 1 cut(s) 478
BsaXI ACNNNNNCTCC 3 cut(s) 34, 907, 937
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 102, 168, 482, 749, 1039
Bse1I ACTGG 1 cut(s) 580
Bse3DI GCAATG 1 cut(s) 637
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 1 cut(s) 1025
BseDI CCNNGG 5 cut(s) 167, 518, 605, 743, 1024
BseGI GGATG 3 cut(s) 121, 487, 689
BseLI CCNNNNNNNGG 6 cut(s) 101, 102, 168, 482, 749, 1039
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 1 cut(s) 638
BseNI ACTGG 1 cut(s) 580
BseRI GAGGAG 3 cut(s) 81, 260, 942
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 2 cut(s) 294, 1032
BshNI GGYRCC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 1155
BsiSI CCGG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 6 cut(s) 101, 102, 168, 482, 749, 1039
BsmAI GTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 6
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 2 cut(s) 294, 1032
BsoBI CYCGRG 1 cut(s) 1155
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 5 cut(s) 319, 364, 796, 847, 919
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 2 cut(s) 281, 873
BspANI GGCC 2 cut(s) 294, 1032
BspCNI CTCAG 1 cut(s) 637
BspEI TCCGGA 1 cut(s) 478
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 7 cut(s) 160, 353, 498, 578, 689, 959, 1022
BspPI GGATC 4 cut(s) 314, 359, 791, 855
BspT107I GGYRCC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 637
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 5 cut(s) 167, 518, 605, 743, 1024
BssMI GATC 5 cut(s) 319, 364, 796, 847, 919
BssNAI GTATAC 2 cut(s) 64, 122
BssSI CACGAG 1 cut(s) 1052
BssT1I CCWWGG 4 cut(s) 167, 518, 605, 743
Bst1107I GTATAC 2 cut(s) 64, 122
Bst2BI CACGAG 1 cut(s) 1052
Bst2UI CCWGG 1 cut(s) 1025
Bst4CI ACNGT 4 cut(s) 41, 565, 951, 1004
BstDEI CTNAG 1 cut(s) 624
BstDSI CCRYGG 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 747
BstF5I GGATG 3 cut(s) 121, 487, 689
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 5 cut(s) 322, 367, 799, 850, 922
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 5 cut(s) 319, 364, 796, 847, 919
BstMWI GCNNNNNNNGC 1 cut(s) 1074
BstNI CCWGG 1 cut(s) 1025
BstSCI CCNGG 1 cut(s) 1023
BstZ17I GTATAC 2 cut(s) 64, 122
BsuRI GGCC 2 cut(s) 294, 1032
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 3 cut(s) 121, 487, 689
BtsIMutI CAGTG 3 cut(s) 587, 956, 1009
CciI TCATGA 1 cut(s) 375
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 159, 875
CseI GACGC 1 cut(s) 759
Csp6I GTAC 4 cut(s) 218, 352, 397, 621
CspCI CAANNNNNGTGG 2 cut(s) 825, 860
CviAII CATG 4 cut(s) 168, 376, 654, 678
CviQI GTAC 4 cut(s) 218, 352, 397, 621
DdeI CTNAG 1 cut(s) 624
DpnI GATC 5 cut(s) 321, 366, 798, 849, 921
DpnII GATC 5 cut(s) 319, 364, 796, 847, 919
EaeI YGGCCR 1 cut(s) 1030
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 4 cut(s) 167, 518, 605, 743
Eco47I GGWCC 2 cut(s) 159, 875
Eco47III AGCGCT 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 1155
EcoNI CCTNNNNNAGG 1 cut(s) 747
EcoRII CCWGG 1 cut(s) 1023
EcoT14I CCWWGG 4 cut(s) 167, 518, 605, 743
EcoT22I ATGCAT 1 cut(s) 655
ErhI CCWWGG 4 cut(s) 167, 518, 605, 743
FaeI CATG 4 cut(s) 171, 379, 657, 681
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FaqI GGGAC 1 cut(s) 6
FatI CATG 4 cut(s) 167, 375, 653, 677
FblI GTMKAC 2 cut(s) 63, 121
FokI GGATG 3 cut(s) 128, 494, 696
FspBI CTAG 2 cut(s) 879, 1017
GlaI GCGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 1138
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 2 cut(s) 294, 1032
HapII CCGG 1 cut(s) 479
HgaI GACGC 1 cut(s) 759
HhaI GCGC 1 cut(s) 273
Hin1II CATG 4 cut(s) 171, 379, 657, 681
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 4 cut(s) 33, 233, 833, 859
HpaII CCGG 1 cut(s) 479
HphI GGTGA 3 cut(s) 71, 254, 608
Hpy166II GTNNAC 3 cut(s) 64, 122, 1000
Hpy188III TCNNGA 8 cut(s) 44, 368, 376, 407, 479, 1011, 1052, 1080
Hpy8I GTNNAC 3 cut(s) 64, 122, 1000
HpyAV CCTTC 6 cut(s) 108, 169, 373, 413, 743, 773
HpyCH4III ACNGT 4 cut(s) 41, 565, 951, 1004
HpyCH4IV ACGT 1 cut(s) 1045
HpyCH4V TGCA 3 cut(s) 147, 263, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 1074
HpyF3I CTNAG 1 cut(s) 624
HpySE526I ACGT 1 cut(s) 1045
Hsp92II CATG 4 cut(s) 171, 379, 657, 681
HspAI GCGC 1 cut(s) 271
Kpn2I TCCGGA 1 cut(s) 478
KpnI GGTACC 1 cut(s) 355
Kzo9I GATC 5 cut(s) 319, 364, 796, 847, 919
LmnI GCTCC 3 cut(s) 409, 957, 1013
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 879, 1017
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 3 cut(s) 302, 527, 596
MalI GATC 5 cut(s) 321, 366, 798, 849, 921
MboI GATC 5 cut(s) 319, 364, 796, 847, 919
MboII GAAGA 4 cut(s) 428, 453, 658, 671
MfeI CAATTG 2 cut(s) 7, 223
MlsI TGGCCA 1 cut(s) 1032
MluCI AATT 5 cut(s) 7, 140, 223, 979, 1111
MluNI TGGCCA 1 cut(s) 1032
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 1 cut(s) 923
Mox20I TGGCCA 1 cut(s) 1032
Mph1103I ATGCAT 1 cut(s) 655
MroI TCCGGA 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 51
MscI TGGCCA 1 cut(s) 1032
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 1 cut(s) 682
Msp20I TGGCCA 1 cut(s) 1032
MspA1I CMGCKG 2 cut(s) 239, 467
MspI CCGG 1 cut(s) 479
MspR9I CCNGG 1 cut(s) 1025
MunI CAATTG 2 cut(s) 7, 223
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 1025
MwoI GCNNNNNNNGC 1 cut(s) 1074
NcoI CCATGG 1 cut(s) 167
NdeII GATC 5 cut(s) 319, 364, 796, 847, 919
NlaIII CATG 4 cut(s) 171, 379, 657, 681
NlaIV GGNNCC 7 cut(s) 160, 353, 498, 578, 689, 959, 1022
NmuCI GTSAC 3 cut(s) 302, 527, 596
NsiI ATGCAT 1 cut(s) 655
PagI TCATGA 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 655
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 3 cut(s) 33, 233, 859
PflFI GACNNNGTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 168
PleI GAGTC 1 cut(s) 841
PpsI GAGTC 1 cut(s) 841
Psp6I CCWGG 1 cut(s) 1023
PspGI CCWGG 1 cut(s) 1023
PspN4I GGNNCC 7 cut(s) 160, 353, 498, 578, 689, 959, 1022
PspPI GGNCC 2 cut(s) 159, 875
PsyI GACNNNGTC 1 cut(s) 18
PvuII CAGCTG 2 cut(s) 239, 467
RsaI GTAC 4 cut(s) 219, 353, 398, 622
RsaNI GTAC 4 cut(s) 218, 352, 397, 621
RseI CAYNNNNRTG 1 cut(s) 682
SaqAI TTAA 1 cut(s) 738
Sau3AI GATC 5 cut(s) 319, 364, 796, 847, 919
Sau96I GGNCC 2 cut(s) 159, 875
ScaI AGTACT 2 cut(s) 398, 622
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 1 cut(s) 1025
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 2 cut(s) 159, 875
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 1078
SmoI CTYRAG 1 cut(s) 1078
Sse9I AATT 5 cut(s) 7, 140, 223, 979, 1111
SsiI CCGC 2 cut(s) 281, 873
SspI AATATT 1 cut(s) 461
SspMI CTAG 2 cut(s) 879, 1017
StyD4I CCNGG 1 cut(s) 1023
StyI CCWWGG 4 cut(s) 167, 518, 605, 743
TaaI ACNGT 4 cut(s) 41, 565, 951, 1004
TaiI ACGT 1 cut(s) 1048
TasI AATT 5 cut(s) 7, 140, 223, 979, 1111
TatI WGTACW 3 cut(s) 217, 396, 620
TfiI GAWTC 3 cut(s) 33, 233, 859
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 3 cut(s) 587, 956, 1009
TseFI GTSAC 3 cut(s) 302, 527, 596
Tsp45I GTSAC 3 cut(s) 302, 527, 596
TspDTI ATGAA 2 cut(s) 354, 392
TspRI CASTG 3 cut(s) 587, 956, 1009
Tth111I GACNNNGTC 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 2 cut(s) 159, 875
XagI CCTNNNNNAGG 1 cut(s) 747
XmiI GTMKAC 2 cut(s) 63, 121
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 2 cut(s) 879, 1017
ZrmI AGTACT 2 cut(s) 398, 622
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.