RLG00000030492

PPR repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014785
Physical Location & Seq
Reverse (-)
62414701 .. 62416569
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030492

Sequence Viewer

Length: 1164 bp
ATGGGTAAATGGGGACATCGCCCCAATCGCAGATTCTTCCGTCAAGAAAAGCTTCCAAGCCCATTCCCTCTTCCTTTTCACCCTCAACCTCCTCCCCCTTCAGAGTTTTGGCGGGATGGTGTACCTCAATGGGAAAAGGAATACTGCACTTTGATTGGGTCCATACCATGGTGGAAGGTGGCAGATGCCAAGAATTATATGTATGGCAGTAGTAATGTACTCAATTGGGACGATTCAGCTGGTGAGGAGGCATTTCAAAATGCGAAAAAGCGCTTTTGGGCAGACATCAACGGCCTCCACTGTGACATCTCTCTACCTGCTTCAGATATTTATATTGATGAAATAGATTGGAACCCTTTCATCGATCCTGATATCGTGAAGGAAGTGGATCGTGAGTACTTTGCTCCTGATGATGGAGATGGAGAAGGAAATGACAAGTTGGGGCAGAAAAAGAGGAAGACAGAACATTCAGCTATTATTCCTTTAGATGGACATAACTGTCTTCCAGATACTCCTACAAATCCTTGGGAATGTGACAATATGCAAAGTAGTGGGGATTTGAAAAATGAAGCAGAGGGCTGGAACCAGGGGAATAATCATACAGATTTGGTTAGTGGTGAAGTCAACTCCTGGGAATGCTTCATTACTCAGAGCAATGAAAGAACGGAAAATACTGCATGGGAAGATAGGGATAAATCATGGAGATGGAGCCAGATGGCAAAAAACAGTCTCTCAAAGAATTGGGATGATGGTGGCAATCCTTGGGCACAGGACTGTCAGGGTGTTACCCATGTGAAAGTTAATAATAGATGGGGTGATCCCTTAAATAAGTCTTGGGGCTCCAACCAGCTGGAGACAAAGAATTTGGATCATGGTGAAAATCCTTGGGAGTGTGGTCCTAGTCAATATAATGAAGCTTTAACAAAGGATCAAGGATGGAAAGATTGTGGAGGTTGGAAACAGTGTGACAGCTGTATTAACCAGGGAAACAATTTGGATTTTAGGATAAAAGGTAGCAGATGGGGAAGTACGAATCACAGTGGCCAGAAGAGGGAATGGTCTCACCAATATCTAGCAGGATCCCGAAGCTCAAGATTTCAAGGGAGTGATTGTCAAACAGGTGGATACTGGAGGCGGGCAAACAATAGAAAGAGGCTCAGCTGA

Protein Analysis

388

Amino Acids

44.56

Weight (kDa)

5.46

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014785)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g02130 FvH4_7g02130
malus_domestica MD02G1297200.v1.1
prunus_persica Prupe.2G026900_v2.0.a1
pyrus_communis pycom02g25040 pycom07g02040
rosa_chinensis RchiOBHm_Chr1g0319371
rosa_laevigata RLG00000030492
rosa_multiflora Rmu_sc0005870.1_g000004 Rmu_sc0014506.1_g000002
rosa_roxburghii Rroxscaffold_4G00328530
rosa_rugosa Rorug01G0027200
rosa_samantha Rh1AG039400 Rh1BG036200 Rh1CG038300 Rh1DG031500
rosa_wichuraiana Rw1G003150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 498
Acc36I ACCTGC 1 cut(s) 325
AccB7I CCANNNNNTGG 1 cut(s) 168
AciI CCGC 2 cut(s) 112, 1135
AclWI GGATC 7 cut(s) 359, 396, 812, 876, 936, 1074, 1087
AcoI YGGCCR 1 cut(s) 1042
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 2 cut(s) 84, 306
AfaI GTAC 4 cut(s) 123, 219, 398, 1030
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 4 cut(s) 168, 413, 488, 1051
AgsI TTSAA 3 cut(s) 257, 562, 1100
AjnI CCWGG 3 cut(s) 585, 629, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 8 cut(s) 52, 239, 473, 850, 917, 972, 1089, 1161
AluI AGCT 8 cut(s) 52, 239, 473, 850, 917, 972, 1089, 1161
Alw26I GTCTC 3 cut(s) 734, 848, 1065
AlwI GGATC 7 cut(s) 359, 396, 812, 876, 936, 1074, 1087
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 2 cut(s) 292, 1042
ApoI RAATTY 1 cut(s) 862
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
Asp700I GAANNNNTTC 2 cut(s) 51, 356
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 2 cut(s) 159, 896
AsuHPI GGTGA 6 cut(s) 71, 254, 629, 827, 887, 1055
AvaII GGWCC 2 cut(s) 159, 896
BaeGI GKGCMC 1 cut(s) 769
BalI TGGCCA 1 cut(s) 1044
BamHI GGATCC 1 cut(s) 1079
BanII GRGCYC 1 cut(s) 842
BbsI GAAGAC 2 cut(s) 464, 494
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 3 cut(s) 587, 631, 983
BciVI GTATCC 1 cut(s) 1118
BcoDI GTCTC 3 cut(s) 734, 848, 1065
BfaI CTAG 2 cut(s) 900, 1073
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 325
BfuI GTATCC 1 cut(s) 1118
BlpI GCTNAGC 1 cut(s) 1157
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 3 cut(s) 587, 631, 983
Bme18I GGWCC 2 cut(s) 159, 896
BmgT120I GGNCC 2 cut(s) 159, 896
BmiI GGNNCC 6 cut(s) 160, 353, 584, 710, 841, 1081
BmrFI CCNGG 3 cut(s) 587, 631, 983
BmsI GCATC 1 cut(s) 175
BpiI GAAGAC 2 cut(s) 464, 494
BpmI CTGGAG 2 cut(s) 872, 1150
Bpu1102I GCTNAGC 1 cut(s) 1157
BpuEI CTTGAG 1 cut(s) 1075
Bsa29I ATCGAT 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 1065
BsaJI CCNNGG 7 cut(s) 167, 524, 586, 630, 761, 884, 982
BsaXI ACNNNNNCTCC 2 cut(s) 1096, 1126
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 413, 488, 1051
Bse1I ACTGG 1 cut(s) 1133
Bse3DI GCAATG 1 cut(s) 661
BseBI CCWGG 3 cut(s) 587, 631, 983
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 7 cut(s) 167, 524, 586, 630, 761, 884, 982
BseGI GGATG 3 cut(s) 121, 751, 941
BseLI CCNNNNNNNGG 4 cut(s) 168, 413, 488, 1051
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 1 cut(s) 1133
BseRI GAGGAG 2 cut(s) 81, 260
BseSI GKGCMC 1 cut(s) 769
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 2 cut(s) 294, 1044
BshVI ATCGAT 1 cut(s) 363
BslFI GGGAC 2 cut(s) 27, 242
BslI CCNNNNNNNGG 4 cut(s) 168, 413, 488, 1051
BsmAI GTCTC 3 cut(s) 734, 848, 1065
BsmFI GGGAC 2 cut(s) 27, 242
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 2 cut(s) 294, 1044
Bso31I GGTCTC 1 cut(s) 1065
Bsp1286I GDGCHC 2 cut(s) 769, 842
Bsp143I GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
Bsp1720I GCTNAGC 1 cut(s) 1157
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 2 cut(s) 112, 1135
BspANI GGCC 2 cut(s) 294, 1044
BspCNI CTCAG 1 cut(s) 661
BspDI ATCGAT 1 cut(s) 363
BspLI GGNNCC 6 cut(s) 160, 353, 584, 710, 841, 1081
BspMI ACCTGC 1 cut(s) 325
BspPI GGATC 7 cut(s) 359, 396, 812, 876, 936, 1074, 1087
BspTNI GGTCTC 1 cut(s) 1065
BsrDI GCAATG 1 cut(s) 661
BsrI ACTGG 1 cut(s) 1133
BssECI CCNNGG 7 cut(s) 167, 524, 586, 630, 761, 884, 982
BssMI GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
BssT1I CCWWGG 4 cut(s) 167, 524, 761, 884
Bst2UI CCWGG 3 cut(s) 587, 631, 983
Bst4CI ACNGT 6 cut(s) 302, 500, 728, 776, 963, 1040
Bst6I CTCTTC 2 cut(s) 75, 1043
BstC8I GCNNGC 1 cut(s) 1137
BstDEI CTNAG 2 cut(s) 648, 1157
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 121, 751, 941
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 6 cut(s) 367, 391, 820, 871, 931, 1082
BstMAI GTCTC 3 cut(s) 734, 848, 1065
BstMBI GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 3 cut(s) 587, 631, 983
BstSCI CCNGG 3 cut(s) 585, 629, 981
BstSLI GKGCMC 1 cut(s) 769
BstV2I GAAGAC 2 cut(s) 464, 494
BstX2I RGATCY 1 cut(s) 1079
BstXI CCANNNNNNTGG 1 cut(s) 850
BstYI RGATCY 1 cut(s) 1079
Bsu15I ATCGAT 1 cut(s) 363
BsuI GTATCC 1 cut(s) 1118
BsuRI GGCC 2 cut(s) 294, 1044
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 2
BtsCI GGATG 3 cut(s) 121, 751, 941
BtsIMutI CAGTG 3 cut(s) 298, 968, 1045
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 1137
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 159, 896
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 4 cut(s) 122, 218, 397, 1029
CviAII CATG 5 cut(s) 168, 678, 699, 791, 872
CviQI GTAC 4 cut(s) 122, 218, 397, 1029
DdeI CTNAG 2 cut(s) 648, 1157
DpnI GATC 6 cut(s) 366, 390, 819, 870, 930, 1081
DpnII GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
DrdI GACNNNNNNGTC 1 cut(s) 498
DseDI GACNNNNNNGTC 1 cut(s) 498
EaeI YGGCCR 1 cut(s) 1042
Eam1104I CTCTTC 2 cut(s) 75, 1043
EarI CTCTTC 2 cut(s) 75, 1043
Eco130I CCWWGG 4 cut(s) 167, 524, 761, 884
Eco24I GRGCYC 1 cut(s) 842
Eco31I GGTCTC 1 cut(s) 1065
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 159, 896
Eco47III AGCGCT 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 84, 306
EcoRII CCWGG 3 cut(s) 585, 629, 981
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 4 cut(s) 167, 524, 761, 884
EcoT38I GRGCYC 1 cut(s) 842
ErhI CCWWGG 4 cut(s) 167, 524, 761, 884
FaeI CATG 5 cut(s) 171, 681, 702, 794, 875
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FaqI GGGAC 2 cut(s) 27, 242
FatI CATG 5 cut(s) 167, 677, 698, 790, 871
FauI CCCGC 2 cut(s) 105, 1128
FokI GGATG 3 cut(s) 128, 758, 948
FriOI GRGCYC 1 cut(s) 842
FspBI CTAG 2 cut(s) 900, 1073
GlaI GCGC 1 cut(s) 272
GsuI CTGGAG 2 cut(s) 872, 1150
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 2 cut(s) 294, 1044
HhaI GCGC 1 cut(s) 273
Hin1II CATG 5 cut(s) 171, 681, 702, 794, 875
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HindIII AAGCTT 2 cut(s) 50, 915
HinfI GANTC 3 cut(s) 33, 233, 1033
HphI GGTGA 6 cut(s) 71, 254, 629, 827, 887, 1055
Hpy166II GTNNAC 2 cut(s) 122, 625
Hpy188I TCNGA 3 cut(s) 103, 325, 651
Hpy188III TCNNGA 8 cut(s) 44, 368, 376, 392, 407, 506, 1083, 1092
Hpy8I GTNNAC 2 cut(s) 122, 625
HpyAV CCTTC 4 cut(s) 108, 169, 373, 419
HpyCH4III ACNGT 6 cut(s) 302, 500, 728, 776, 963, 1040
HpyCH4V TGCA 3 cut(s) 147, 544, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 2 cut(s) 648, 1157
Hsp92II CATG 5 cut(s) 171, 681, 702, 794, 875
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
LmnI GCTCC 3 cut(s) 409, 708, 845
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 900, 1073
MaeIII GTNAC 4 cut(s) 302, 533, 784, 965
MalI GATC 6 cut(s) 366, 390, 819, 870, 930, 1081
MboI GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
MboII GAAGA 6 cut(s) 28, 62, 469, 494, 695, 1060
MfeI CAATTG 1 cut(s) 223
MflI RGATCY 1 cut(s) 1079
MhlI GDGCHC 2 cut(s) 769, 842
MlsI TGGCCA 1 cut(s) 1044
MluCI AATT 5 cut(s) 193, 223, 739, 862, 991
MluNI TGGCCA 1 cut(s) 1044
MmeI TCCRAC 2 cut(s) 867, 935
Mox20I TGGCCA 1 cut(s) 1044
MroXI GAANNNNTTC 2 cut(s) 51, 356
MscI TGGCCA 1 cut(s) 1044
MseI TTAA 4 cut(s) 801, 824, 920, 978
MslI CAYNNNNRTG 1 cut(s) 703
Msp20I TGGCCA 1 cut(s) 1044
MspA1I CMGCKG 4 cut(s) 239, 850, 972, 1161
MspR9I CCNGG 3 cut(s) 587, 631, 983
MunI CAATTG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 641
MvaI CCWGG 3 cut(s) 587, 631, 983
MwoI GCNNNNNNNGC 1 cut(s) 27
NcoI CCATGG 1 cut(s) 167
NdeII GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
NlaIII CATG 5 cut(s) 171, 681, 702, 794, 875
NlaIV GGNNCC 6 cut(s) 160, 353, 584, 710, 841, 1081
NmuCI GTSAC 3 cut(s) 302, 533, 965
PctI GAATGC 1 cut(s) 641
PdmI GAANNNNTTC 2 cut(s) 51, 356
PfeI GAWTC 3 cut(s) 33, 233, 1033
PflMI CCANNNNNTGG 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 585, 629, 981
PspGI CCWGG 3 cut(s) 585, 629, 981
PspN4I GGNNCC 6 cut(s) 160, 353, 584, 710, 841, 1081
PspPI GGNCC 2 cut(s) 159, 896
PsrI GAACNNNNNNTAC 2 cut(s) 655, 687
PsuI RGATCY 1 cut(s) 1079
PvuII CAGCTG 4 cut(s) 239, 850, 972, 1161
RsaI GTAC 4 cut(s) 123, 219, 398, 1030
RsaNI GTAC 4 cut(s) 122, 218, 397, 1029
RseI CAYNNNNRTG 1 cut(s) 703
SaqAI TTAA 4 cut(s) 801, 824, 920, 978
Sau3AI GATC 6 cut(s) 364, 388, 817, 868, 928, 1079
Sau96I GGNCC 2 cut(s) 159, 896
ScaI AGTACT 1 cut(s) 398
ScrFI CCNGG 3 cut(s) 587, 631, 983
SduI GDGCHC 2 cut(s) 769, 842
SfaNI GCATC 1 cut(s) 175
SinI GGWCC 2 cut(s) 159, 896
SmiMI CAYNNNNRTG 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 1090
SmoI CTYRAG 1 cut(s) 1090
Sse9I AATT 5 cut(s) 193, 223, 739, 862, 991
SsiI CCGC 2 cut(s) 112, 1135
SspMI CTAG 2 cut(s) 900, 1073
StyD4I CCNGG 3 cut(s) 585, 629, 981
StyI CCWWGG 4 cut(s) 167, 524, 761, 884
TaaI ACNGT 6 cut(s) 302, 500, 728, 776, 963, 1040
TaqI TCGA 1 cut(s) 363
TasI AATT 5 cut(s) 193, 223, 739, 862, 991
TatI WGTACW 2 cut(s) 217, 396
TfiI GAWTC 3 cut(s) 33, 233, 1033
Tru1I TTAA 4 cut(s) 801, 824, 920, 978
Tru9I TTAA 4 cut(s) 801, 824, 920, 978
TscAI CASTG 3 cut(s) 305, 968, 1045
TseFI GTSAC 3 cut(s) 302, 533, 965
Tsp45I GTSAC 3 cut(s) 302, 533, 965
TspDTI ATGAA 6 cut(s) 349, 354, 582, 631, 672, 927
TspGWI ACGGA 2 cut(s) 29, 680
TspRI CASTG 3 cut(s) 305, 968, 1045
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 2 cut(s) 159, 896
XapI RAATTY 1 cut(s) 862
XmnI GAANNNNTTC 2 cut(s) 51, 356
XspI CTAG 2 cut(s) 900, 1073
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.