FvH4_7g05740

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016382
Physical Location & Seq
Forward (+)
5981907 .. 5986437
4531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05740.t1

Sequence Viewer

Length: 1335 bp
ATGGCAATGGCTTGCAATACTAGTTATTATGGTGGTTTCAAAGAGCTGAGGCCATTGTTTCACTTGCTCTTGCCTCTCTGCCTCCATTGGATCGCTGAAGAAATGACTGTTTCTGTCCTCGTTGATGTTACCACTACTGCTCTCTGCCCCGCCCACTCCACTTGTTCTCAACCTATCTATATCAACGGCATCCAACAAACGATTGTTGGACTTTTCAAGATGGTGGTGTTACCGATTCTTGGTCAACTCGCTGATGAGAATGGCCGTAAACCAGTGCTCCTTCTTACTGTGTCAACAACCATATTCCCTTTTGCATTACTTGCTTGGAACCAGTCCAAGGGATTTGTTTATGCTTACTATGTGCTTCGTACAATTTCATATATTCTGAGTCAGGGGAGTATTTTCTGCATCGCCATTGCTTATGTGGCAGATGTTGTCAGTGAGAATAATAGGGCTGCAGTATTTAGTTGGATCACAGGTCTCTTCTCTGCATCTCATGTGTTAGGAAATGTTCTGGCCCGTTTTCTTCCTGAGATCTACATTTTCCCCGTTTCAATAGCGCTCATGATCTTTTGTCCAGTTTATATGCAAATATTTTTGGTTGAGACAACCAATAAATTGGCCCCTCAAATGGACCAAGATTTGTCTTGCCTGACCAAGAGAGTTGCGATTATTCATAAACGATATGTTTCAATGAGAGATGCTGCAAAAGTAGTTATGAGCAGTTCGACACTGAGGAGCATTTCTTTGGTATCCTTCTTCTATGAGATGGGAATGTCTGGCATCAGCGCTGTATTACTGTACTATCTGAAGGCAACTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCAAATGATGGTGGGAATAGGCTCAATTGTCTCTCAGATGTTGGTGCTTCCTTTAGTCAATCCATTAGTTGGAGAGAAAGTGATACTGTGCATATCCTTGTGTGCGTCAATAGCTTATGCAGTGCTATATGGTTTGGCTTGGGCTTCTTGGGTACCATACTTGAGTGCTTCATTTGGAGTCATTTACGTCCTTGTGAAACCATCAACGTTCGCAATTATTTCAAAAGCGTCAAGCTTATCTGATCAGGGAAAGGTGCAAGGATTTATAGCTGGTGTGCAGTCCATATCAAGCCTGCTATCTCCCATTGCAATGAGTCCATTGACATCATGGTTTCTATCTAGCAATGCTCCTTTCGACTGCAAAGGCTTTAGCATAATATGTGCATCCATATGCATGGTAATATCCCTTTGTTATGCCTGCAAGCTTAATCCTGACTCGTGCTCTAAAGACGACGCTGAAGCACCGCTTCTTACTGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

445

Amino Acids

48.54

Weight (kDa)

7.83

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 63 - 385 8.9e-21 Major Facilitator Superfamily
MFS_1 PF07690 249 - 418 1.4e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1003
AccB1I GGYRCC 1 cut(s) 1003
AccB7I CCANNNNNTGG 2 cut(s) 859, 920
AciI CCGC 2 cut(s) 150, 1316
AclI AACGTT 1 cut(s) 1058
AclWI GGATC 3 cut(s) 98, 479, 844
AcoI YGGCCR 1 cut(s) 262
AcuI CTGAAG 3 cut(s) 117, 830, 1329
AfaI GTAC 3 cut(s) 370, 803, 1005
AfeI AGCGCT 2 cut(s) 561, 790
AfiI CCNNNNNNNGG 5 cut(s) 239, 337, 631, 859, 920
AgsI TTSAA 5 cut(s) 40, 217, 555, 693, 1074
AhlI ACTAGT 1 cut(s) 20
AluBI AGCT 5 cut(s) 46, 965, 1086, 1121, 1276
AluI AGCT 5 cut(s) 46, 965, 1086, 1121, 1276
Alw21I GWGCWC 2 cut(s) 279, 1295
Alw26I GTCTC 3 cut(s) 485, 599, 886
AlwI GGATC 3 cut(s) 98, 479, 844
Aor51HI AGCGCT 2 cut(s) 561, 790
AoxI GGCC 4 cut(s) 50, 262, 516, 621
ApeKI GCWGC 2 cut(s) 455, 704
Asp718I GGTACC 1 cut(s) 1003
AspLEI GCGC 2 cut(s) 562, 791
AspS9I GGNCC 3 cut(s) 517, 622, 634
AvaII GGWCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 1003
BauI CACGAG 1 cut(s) 1288
Bbv12I GWGCWC 2 cut(s) 279, 1295
BbvCI CCTCAGC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 442, 691
BccI CCATC 4 cut(s) 214, 763, 853, 1060
BceAI ACGGC 2 cut(s) 202, 249
BciVI GTATCC 1 cut(s) 763
BclI TGATCA 1 cut(s) 1093
BcoDI GTCTC 3 cut(s) 485, 599, 886
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 2 cut(s) 21, 1191
BfmI CTRYAG 1 cut(s) 456
BfoI RGCGCY 2 cut(s) 563, 792
BfuI GTATCC 1 cut(s) 763
BglII AGATCT 1 cut(s) 534
BisI GCNGC 2 cut(s) 456, 705
BlsI GCNGC 2 cut(s) 457, 706
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 517, 622, 634
BmiI GGNNCC 3 cut(s) 329, 624, 1005
BmsI GCATC 6 cut(s) 198, 417, 500, 691, 792, 1244
Bpu10I CCTNAGC 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 1033
BsaI GGTCTC 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 4 cut(s) 261, 291, 915, 945
Bsc4I CCNNNNNNNGG 5 cut(s) 239, 337, 631, 859, 920
Bse1I ACTGG 3 cut(s) 272, 331, 578
Bse3DI GCAATG 5 cut(s) 12, 414, 1155, 1167, 1201
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 189, 1235
BseLI CCNNNNNNNGG 5 cut(s) 239, 337, 631, 859, 920
BseMI GCAATG 5 cut(s) 12, 414, 1155, 1167, 1201
BseMII CTCAG 6 cut(s) 38, 377, 522, 725, 858, 899
BseNI ACTGG 3 cut(s) 272, 331, 578
BseRI GAGGAG 1 cut(s) 751
BseXI GCAGC 2 cut(s) 442, 691
BsgI GTGCAG 1 cut(s) 1148
BshFI GGCC 4 cut(s) 52, 264, 518, 623
BshNI GGYRCC 1 cut(s) 1003
BsiHKAI GWGCWC 2 cut(s) 279, 1295
BslI CCNNNNNNNGG 5 cut(s) 239, 337, 631, 859, 920
BsmAI GTCTC 3 cut(s) 485, 599, 886
BsnI GGCC 4 cut(s) 52, 264, 518, 623
Bso31I GGTCTC 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 279, 1295
Bsp143I GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
BspACI CCGC 2 cut(s) 150, 1316
BspANI GGCC 4 cut(s) 52, 264, 518, 623
BspCNI CTCAG 6 cut(s) 39, 378, 523, 726, 857, 898
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 3 cut(s) 329, 624, 1005
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 3 cut(s) 98, 479, 844
BspT107I GGYRCC 1 cut(s) 1003
BspTNI GGTCTC 1 cut(s) 485
BsrDI GCAATG 5 cut(s) 12, 414, 1155, 1167, 1201
BsrI ACTGG 3 cut(s) 272, 331, 578
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
BssSI CACGAG 1 cut(s) 1288
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 1 cut(s) 1288
Bst4CI ACNGT 4 cut(s) 109, 289, 801, 939
Bst6I CTCTTC 1 cut(s) 488
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 4 cut(s) 13, 1145, 1270, 1274
BstDEI CTNAG 6 cut(s) 47, 386, 531, 734, 844, 885
BstF5I GGATG 2 cut(s) 189, 1235
BstH2I RGCGCY 2 cut(s) 563, 792
BstHHI GCGC 2 cut(s) 562, 791
BstKTI GATC 6 cut(s) 93, 474, 537, 570, 852, 1096
BstMAI GTCTC 3 cut(s) 485, 599, 886
BstMBI GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 320, 425, 962
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 442, 691
BstX2I RGATCY 2 cut(s) 534, 849
BstXI CCANNNNNNTGG 2 cut(s) 619, 1246
BstYI RGATCY 2 cut(s) 534, 849
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 4 cut(s) 52, 264, 518, 623
BtgZI GCGATG 1 cut(s) 394
BtsCI GGATG 2 cut(s) 189, 1235
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 4 cut(s) 279, 445, 731, 978
Cac8I GCNNGC 4 cut(s) 13, 1145, 1270, 1274
CciI TCATGA 1 cut(s) 564
CfoI GCGC 2 cut(s) 562, 791
Cfr13I GGNCC 3 cut(s) 517, 622, 634
CseI GACGC 3 cut(s) 945, 1068, 1313
Csp6I GTAC 3 cut(s) 369, 802, 1004
CspCI CAANNNNNGTGG 2 cut(s) 143, 178
CviAII CATG 4 cut(s) 497, 565, 1179, 1246
CviQI GTAC 3 cut(s) 369, 802, 1004
DdeI CTNAG 6 cut(s) 47, 386, 531, 734, 844, 885
DpnI GATC 6 cut(s) 92, 473, 536, 569, 851, 1095
DpnII GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 634
Eco47III AGCGCT 2 cut(s) 561, 790
Eco57I CTGAAG 3 cut(s) 117, 830, 1329
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 1247
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 4 cut(s) 500, 568, 1182, 1249
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FatI CATG 4 cut(s) 496, 564, 1178, 1245
FauI CCCGC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 1241
FbaI TGATCA 1 cut(s) 1093
Fnu4HI GCNGC 2 cut(s) 456, 705
FokI GGATG 2 cut(s) 176, 1222
Fsp4HI GCNGC 2 cut(s) 456, 705
FspBI CTAG 2 cut(s) 21, 1191
GlaI GCGC 2 cut(s) 561, 790
GluI GCNGC 2 cut(s) 456, 705
HaeII RGCGCY 2 cut(s) 563, 792
HaeIII GGCC 4 cut(s) 52, 264, 518, 623
HgaI GACGC 3 cut(s) 945, 1068, 1313
HhaI GCGC 2 cut(s) 562, 791
Hin1II CATG 4 cut(s) 500, 568, 1182, 1249
Hin6I GCGC 2 cut(s) 560, 789
HinP1I GCGC 2 cut(s) 560, 789
HincII GTYRAC 2 cut(s) 245, 294
HindII GTYRAC 2 cut(s) 245, 294
HindIII AAGCTT 2 cut(s) 1084, 1274
HinfI GANTC 5 cut(s) 235, 388, 1029, 1165, 1286
Hpy166II GTNNAC 3 cut(s) 245, 269, 294
Hpy188I TCNGA 5 cut(s) 387, 810, 847, 888, 1093
Hpy188III TCNNGA 4 cut(s) 217, 530, 565, 1283
Hpy8I GTNNAC 3 cut(s) 245, 269, 294
Hpy99I CGWCG 1 cut(s) 1307
HpyAV CCTTC 3 cut(s) 290, 766, 805
HpyCH4III ACNGT 4 cut(s) 109, 289, 801, 939
HpyCH4IV ACGT 2 cut(s) 1038, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 425, 962
HpyF3I CTNAG 6 cut(s) 47, 386, 531, 734, 844, 885
HpySE526I ACGT 2 cut(s) 1038, 1058
Hsp92II CATG 4 cut(s) 500, 568, 1182, 1249
HspAI GCGC 2 cut(s) 560, 789
KpnI GGTACC 1 cut(s) 1007
Ksp22I TGATCA 1 cut(s) 1093
Kzo9I GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
LmnI GCTCC 3 cut(s) 282, 738, 1204
Lsp1109I GCAGC 2 cut(s) 442, 691
LweI GCATC 6 cut(s) 198, 417, 500, 691, 792, 1244
MaeI CTAG 2 cut(s) 21, 1191
MaeII ACGT 2 cut(s) 1038, 1058
MaeIII GTNAC 2 cut(s) 127, 228
MalI GATC 6 cut(s) 92, 473, 536, 569, 851, 1095
MboI GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
MboII GAAGA 4 cut(s) 110, 475, 518, 751
MfeI CAATTG 1 cut(s) 876
MflI RGATCY 2 cut(s) 534, 849
MhlI GDGCHC 2 cut(s) 279, 1295
MluCI AATT 5 cut(s) 372, 617, 839, 876, 1065
MlyI GAGTC 4 cut(s) 397, 1038, 1174, 1280
MmeI TCCRAC 4 cut(s) 187, 217, 449, 901
MnlI CCTC 6 cut(s) 42, 84, 92, 128, 636, 729
Mph1103I ATGCAT 1 cut(s) 1247
MseI TTAA 1 cut(s) 1278
MslI CAYNNNNRTG 3 cut(s) 1160, 1240, 1244
MunI CAATTG 1 cut(s) 876
MwoI GCNNNNNNNGC 3 cut(s) 320, 425, 962
NdeI CATATG 1 cut(s) 1241
NdeII GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
NlaIII CATG 4 cut(s) 500, 568, 1182, 1249
NlaIV GGNNCC 3 cut(s) 329, 624, 1005
NsiI ATGCAT 1 cut(s) 1247
PagI TCATGA 1 cut(s) 564
PfeI GAWTC 1 cut(s) 235
PflMI CCANNNNNTGG 2 cut(s) 859, 920
PkrI GCNGC 2 cut(s) 457, 706
PleI GAGTC 4 cut(s) 396, 1037, 1173, 1280
PpsI GAGTC 4 cut(s) 396, 1037, 1173, 1280
Psp1406I AACGTT 1 cut(s) 1058
PspN4I GGNNCC 3 cut(s) 329, 624, 1005
PspPI GGNCC 3 cut(s) 517, 622, 634
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 2 cut(s) 534, 849
RsaI GTAC 3 cut(s) 370, 803, 1005
RsaNI GTAC 3 cut(s) 369, 802, 1004
RseI CAYNNNNRTG 3 cut(s) 1160, 1240, 1244
SaqAI TTAA 1 cut(s) 1278
SatI GCNGC 2 cut(s) 456, 705
Sau3AI GATC 6 cut(s) 90, 471, 534, 567, 849, 1093
Sau96I GGNCC 3 cut(s) 517, 622, 634
SchI GAGTC 4 cut(s) 397, 1038, 1174, 1280
SduI GDGCHC 2 cut(s) 279, 1295
SfaNI GCATC 6 cut(s) 198, 417, 500, 691, 792, 1244
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 634
SmiMI CAYNNNNRTG 3 cut(s) 1160, 1240, 1244
SmlI CTYRAG 1 cut(s) 1012
SmoI CTYRAG 1 cut(s) 1012
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 5 cut(s) 372, 617, 839, 876, 1065
SsiI CCGC 2 cut(s) 150, 1316
SspI AATATT 1 cut(s) 594
SspMI CTAG 2 cut(s) 21, 1191
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 4 cut(s) 109, 289, 801, 939
TaiI ACGT 2 cut(s) 1041, 1061
TaqI TCGA 2 cut(s) 728, 1206
TasI AATT 5 cut(s) 372, 617, 839, 876, 1065
TatI WGTACW 1 cut(s) 801
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 1278
Tru9I TTAA 1 cut(s) 1278
TscAI CASTG 4 cut(s) 279, 445, 738, 978
TseI GCWGC 2 cut(s) 455, 704
TspDTI ATGAA 3 cut(s) 366, 665, 1011
TspRI CASTG 4 cut(s) 279, 445, 738, 978
Van91I CCANNNNNTGG 2 cut(s) 859, 920
VpaK11BI GGWCC 1 cut(s) 634
XcmI CCANNNNNNNNNTGG 2 cut(s) 421, 1176
XspI CTAG 2 cut(s) 21, 1191
Zsp2I ATGCAT 1 cut(s) 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.