Rorug01G0104000

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016382
Physical Location & Seq
Reverse (-)
17336382 .. 17337306
925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0104000.1

Sequence Viewer

Length: 453 bp
ATGTGCTACTTTGCTCCTTGTGGTCGTATTGGTACTGCAGCCCCGGTTTATTCTCTGCTGGGAGTTTCTCCTCTTAGAGCGCGAGCCCCAAAGTTTACCCCTGTGGTTTGGGAGTCTCCGGCTCCGGGTTGGATCAAGGCGAATACGGATGGGTCTTTTTCAGATCCTGCTAGCGCTGGCTTTGGCGGGGTCTTTAGGGATTCAGATGGTCTCTTCCTGGGAGGATTTTCTTATAAGGCTGCTGTCCCAAATATGAGGCCTTTGCCTAAATTGGATGCAGACACCATAGAAATCTTCAAGGGGCTTATATCTTCTCAGAGAAAGCACATAAACTCCACTGAAGGTAATGGAGATAGGGCTTCAAAGTTCAAATACAAATGGAGATATCTTAAAAGGATCTCGCAGACGTTTAGCTGTAAGACCTCTTCATTTATACTTGCTGCTTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

150

Amino Acids

16.37

Weight (kDa)

9.78

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 186
AclWI GGATC 3 cut(s) 140, 158, 404
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 1 cut(s) 34
AfeI AGCGCT 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 3 cut(s) 298, 363, 370
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 120, 215
AlwI GGATC 3 cut(s) 140, 158, 404
AlwNI CAGNNNCTG 1 cut(s) 167
Aor51HI AGCGCT 1 cut(s) 175
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 3 cut(s) 38, 239, 440
AspLEI GCGC 2 cut(s) 82, 176
AsuC2I CCSGG 2 cut(s) 44, 126
AsuNHI GCTAGC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 88
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BbvI GCAGC 3 cut(s) 50, 226, 427
BccI CCATC 2 cut(s) 143, 200
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 2 cut(s) 44, 126
BcoDI GTCTC 2 cut(s) 120, 215
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 3 cut(s) 39, 240, 441
BlsI GCNGC 3 cut(s) 40, 241, 442
Bme1390I CCNGG 3 cut(s) 44, 126, 218
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 3 cut(s) 44, 126, 218
BmsI GCATC 1 cut(s) 265
BmtI GCTAGC 1 cut(s) 174
BpuMI CCSGG 2 cut(s) 44, 126
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 42, 217
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 42, 217
BseGI GGATG 2 cut(s) 154, 280
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 50, 226, 427
BseYI CCCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 1 cut(s) 259
BsiSI CCGG 3 cut(s) 44, 119, 125
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 120, 215
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 259
Bso31I GGTCTC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 132, 163, 396
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 174
BspPI GGATC 3 cut(s) 140, 158, 404
BspTNI GGTCTC 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 42, 217
BssMI GATC 3 cut(s) 132, 163, 396
Bst2UI CCWGG 1 cut(s) 218
Bst6I CTCTTC 2 cut(s) 218, 430
BstC8I GCNNGC 3 cut(s) 84, 172, 178
BstDEI CTNAG 2 cut(s) 74, 315
BstF5I GGATG 2 cut(s) 154, 280
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 2 cut(s) 82, 176
BstKTI GATC 3 cut(s) 135, 166, 399
BstMAI GTCTC 2 cut(s) 120, 215
BstMBI GATC 3 cut(s) 132, 163, 396
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 3 cut(s) 42, 124, 216
BstSFI CTRYAG 1 cut(s) 36
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 50, 226, 427
BstX2I RGATCY 2 cut(s) 163, 396
BstYI RGATCY 2 cut(s) 163, 396
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 154, 280
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 3 cut(s) 84, 172, 178
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 2 cut(s) 82, 176
Csp6I GTAC 1 cut(s) 33
CviJI RGCY 9 cut(s) 41, 86, 122, 180, 239, 259, 304, 359, 414
CviKI_1 RGCY 9 cut(s) 41, 86, 122, 180, 239, 259, 304, 359, 414
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 2 cut(s) 74, 315
DpnI GATC 3 cut(s) 134, 165, 398
DpnII GATC 3 cut(s) 132, 163, 396
Eam1104I CTCTTC 2 cut(s) 218, 430
EarI CTCTTC 2 cut(s) 218, 430
Eco147I AGGCCT 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 386
Eco47III AGCGCT 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 216
EcoRV GATATC 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 88
FaiI YATR 7 cut(s) 234, 254, 287, 308, 329, 434, 447
FaqI GGGAC 1 cut(s) 230
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 3 cut(s) 39, 240, 441
FokI GGATG 2 cut(s) 161, 287
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 39, 240, 441
FspBI CTAG 1 cut(s) 171
GlaI GCGC 2 cut(s) 81, 175
GluI GCNGC 3 cut(s) 39, 240, 441
GsaI CCCAGC 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 259
HapII CCGG 3 cut(s) 44, 119, 125
HhaI GCGC 2 cut(s) 82, 176
Hin6I GCGC 2 cut(s) 80, 174
HinP1I GCGC 2 cut(s) 80, 174
HinfI GANTC 2 cut(s) 113, 200
HpaII CCGG 3 cut(s) 44, 119, 125
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 163, 205, 318
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 2 cut(s) 38, 278
HpyF3I CTNAG 2 cut(s) 74, 315
HpySE526I ACGT 1 cut(s) 407
HspAI GCGC 2 cut(s) 80, 174
Kzo9I GATC 3 cut(s) 132, 163, 396
LmnI GCTCC 2 cut(s) 19, 127
LpnPI CCDG 9 cut(s) 44, 57, 114, 132, 138, 162, 180, 203, 230
Lsp1109I GCAGC 3 cut(s) 50, 226, 427
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 407
MalI GATC 3 cut(s) 134, 165, 398
MboI GATC 3 cut(s) 132, 163, 396
MboII GAAGA 4 cut(s) 205, 286, 303, 417
MflI RGATCY 2 cut(s) 163, 396
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 4 cut(s) 81, 215, 249, 433
MseI TTAA 1 cut(s) 390
MspI CCGG 3 cut(s) 44, 119, 125
MspR9I CCNGG 3 cut(s) 44, 126, 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 82
NciI CCSGG 2 cut(s) 44, 126
NdeII GATC 3 cut(s) 132, 163, 396
NheI GCTAGC 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 123
PceI AGGCCT 1 cut(s) 259
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 40, 241, 442
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PsiI TTATAA 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 2 cut(s) 163, 396
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 39, 240, 441
Sau3AI GATC 3 cut(s) 132, 163, 396
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 3 cut(s) 44, 126, 218
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 346, 410, 416, 425
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 269
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 1 cut(s) 186
SspMI CTAG 1 cut(s) 171
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 3 cut(s) 42, 124, 216
TaiI ACGT 1 cut(s) 410
TasI AATT 1 cut(s) 269
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 343
TseI GCWGC 3 cut(s) 38, 239, 440
TspDTI ATGAA 1 cut(s) 417
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 343
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.