Rh1CG121800

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016382
Physical Location & Seq
Forward (+)
26638012 .. 26642699
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG121800.1

Sequence Viewer

Length: 1197 bp
ATGTTACTACTACTGCTCTTTGCCCCGCCCACTCCACCTGTTCTCAACCTATCTATATCACTGATTGTTGGACTTTTCAAGATGGTGGTGTTACCAATTCTTGGTCAACTCGCAGATGAGAATGGCCGTAAACCAGTGCTCCTTCTTACTGTGTCAACAACCATATTCCCTTTTGCATTACTTGCCTGGAATCAGTCCAAGGGATTTGTGTATGCTTATTATGTGCTTCGTACATTTTCATATATTCTGAGTCAGGGGAGTATATTCTGCATCGCTGTTGCTTATGTGGCAGATGTTGTCAGCGAAAATAATAGGGCTGCAGCATTTAGTTGGATCACAGGTCTCTTCTCTGCATCGCATGTGTTGGGAAATGTTCTGGCCCGTTTTCTTCCCGAGAAGTACATTTTCTATGTTTCAATAGCACTCCTGATCTTTTGTCCAGTTTATATGCAAATATTTTTGGTTGAGACAACAAAAAAATTGGCCCCTCAAATGGACCAAGACTTGTCTTGCCTGACCAAGAGAGTTGCCATTATTCATAAACGTTATGTTTCAATGAGAGATGCTGCAACAATAGTTATGAGCAGTTCAACATTGAGGAGCATTTCTTTGGTTTCCTTCTTCTATGAGATGGGAATGTCTGGCATCAGCACTGTATTATTGTACTATCTGAAGGCAGCTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCTGATGATGGTGGGAATAGGCTCAATTGTCTCTCAGATGTTGGTGCTTCCATTAATCAATCCATTAGTTGGAGAGAAAGTGATACTATGCATATCCTTGTGTGCGTCAATAGCTTATGCAGTGCTCTATGGCTTGGCTTGGGCTTCTTGGGTACCATACTTAAGTGCTTCATTTGGAGTCATCTACATCCTTGTGAAACCTTCCACTTTTGCAATTATTTCAAAAGCATCAAGCTTATCTGATCAGGGAAAGGTGCAAGGATTTATTGCTGGTGTGCAGTCCATATCAAGCCTGCTATCTCCAGTTGCCATGAGTCCATTGACATCATGGTTTCTATCTAGCAGTGCCCCTTTCGACTGCAAAGGTTTTAGCATAATATGTGCATCCATATGCATGGTGATATCCCTTTGTTATGCCTGCAAGCTTAAACCTGAATCATGCTCTACAGACGACGCTGAAGCACCGCTTCTGACTGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

398

Amino Acids

43.39

Weight (kDa)

8.55

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 19 - 339 1.5e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 865
AccB7I CCANNNNNTGG 2 cut(s) 101, 782
AciI CCGC 2 cut(s) 26, 1178
AclI AACGTT 1 cut(s) 544
AclWI GGATC 2 cut(s) 341, 706
AcoI YGGCCR 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 692, 1191
AfaI GTAC 4 cut(s) 232, 401, 665, 867
AfiI CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
AflII CTTAAG 1 cut(s) 874
AgsI TTSAA 5 cut(s) 79, 417, 555, 591, 936
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 4 cut(s) 680, 827, 948, 1138
AluI AGCT 4 cut(s) 680, 827, 948, 1138
Alw21I GWGCWC 2 cut(s) 141, 840
Alw26I GTCTC 3 cut(s) 347, 461, 748
AlwI GGATC 2 cut(s) 341, 706
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 3 cut(s) 124, 378, 483
ApeKI GCWGC 4 cut(s) 317, 320, 566, 677
AseI ATTAAT 1 cut(s) 767
Asp718I GGTACC 1 cut(s) 865
AspS9I GGNCC 3 cut(s) 379, 484, 496
AsuHPI GGTGA 1 cut(s) 1123
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 1063
BanI GGYRCC 1 cut(s) 865
Bbv12I GWGCWC 2 cut(s) 141, 840
BbvI GCAGC 4 cut(s) 304, 332, 553, 689
BccI CCATC 3 cut(s) 76, 625, 715
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 187
BclI TGATCA 1 cut(s) 955
BcoDI GTCTC 3 cut(s) 347, 461, 748
BfaI CTAG 1 cut(s) 1053
BfmI CTRYAG 2 cut(s) 318, 1158
BfrI CTTAAG 1 cut(s) 874
BisI GCNGC 4 cut(s) 318, 321, 567, 678
BlsI GCNGC 4 cut(s) 319, 322, 568, 679
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 379, 484, 496
BmiI GGNNCC 2 cut(s) 486, 867
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 6 cut(s) 279, 362, 553, 654, 950, 1106
BpmI CTGGAG 1 cut(s) 999
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 777, 807
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
Bse1I ACTGG 3 cut(s) 134, 440, 1016
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 900, 1097
BseLI CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
BseMII CTCAG 3 cut(s) 239, 720, 761
BseNI ACTGG 3 cut(s) 134, 440, 1016
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 4 cut(s) 304, 332, 553, 689
BsgI GTGCAG 1 cut(s) 1010
BshFI GGCC 3 cut(s) 126, 380, 485
BshNI GGYRCC 1 cut(s) 865
BsiHKAI GWGCWC 2 cut(s) 141, 840
BsiHKCI CYCGRG 1 cut(s) 392
BslI CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
BsmAI GTCTC 3 cut(s) 347, 461, 748
BsnI GGCC 3 cut(s) 126, 380, 485
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 3 cut(s) 141, 840, 1063
Bsp143I GATC 4 cut(s) 333, 429, 711, 955
BspACI CCGC 2 cut(s) 26, 1178
BspANI GGCC 3 cut(s) 126, 380, 485
BspCNI CTCAG 3 cut(s) 240, 719, 760
BspLI GGNNCC 2 cut(s) 486, 867
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 2 cut(s) 341, 706
BspT107I GGYRCC 1 cut(s) 865
BspTI CTTAAG 1 cut(s) 874
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 3 cut(s) 134, 440, 1016
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 4 cut(s) 333, 429, 711, 955
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 151, 655
Bst6I CTCTTC 1 cut(s) 350
BstAFI CTTAAG 1 cut(s) 874
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 1007, 1132, 1136
BstDEI CTNAG 3 cut(s) 248, 706, 747
BstF5I GGATG 2 cut(s) 900, 1097
BstKTI GATC 4 cut(s) 336, 432, 714, 958
BstMAI GTCTC 3 cut(s) 347, 461, 748
BstMBI GATC 4 cut(s) 333, 429, 711, 955
BstMWI GCNNNNNNNGC 3 cut(s) 182, 287, 824
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 2 cut(s) 318, 1158
BstSLI GKGCMC 1 cut(s) 1063
BstV1I GCAGC 4 cut(s) 304, 332, 553, 689
BstX2I RGATCY 1 cut(s) 711
BstXI CCANNNNNNTGG 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 3 cut(s) 126, 380, 485
BtgZI GCGATG 2 cut(s) 256, 339
BtsCI GGATG 2 cut(s) 900, 1097
BtsI GCAGTG 2 cut(s) 840, 1063
BtsIMutI CAGTG 5 cut(s) 59, 141, 651, 840, 1063
Cac8I GCNNGC 3 cut(s) 1007, 1132, 1136
Cfr13I GGNCC 3 cut(s) 379, 484, 496
CseI GACGC 2 cut(s) 807, 1175
Csp6I GTAC 4 cut(s) 231, 400, 664, 866
CviAII CATG 5 cut(s) 359, 1024, 1041, 1108, 1152
CviQI GTAC 4 cut(s) 231, 400, 664, 866
DdeI CTNAG 3 cut(s) 248, 706, 747
DpnI GATC 4 cut(s) 335, 431, 713, 957
DpnII GATC 4 cut(s) 333, 429, 711, 955
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 1116
Eco47I GGWCC 1 cut(s) 496
Eco57I CTGAAG 2 cut(s) 692, 1191
Eco88I CYCGRG 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 1116
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 2 cut(s) 806, 1109
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 5 cut(s) 362, 1027, 1044, 1111, 1155
FalI AAGNNNNNCTT 2 cut(s) 1164, 1196
FatI CATG 5 cut(s) 358, 1023, 1040, 1107, 1151
FauI CCCGC 1 cut(s) 33
FauNDI CATATG 1 cut(s) 1103
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 4 cut(s) 318, 321, 567, 678
FokI GGATG 2 cut(s) 887, 1084
Fsp4HI GCNGC 4 cut(s) 318, 321, 567, 678
FspBI CTAG 1 cut(s) 1053
GluI GCNGC 4 cut(s) 318, 321, 567, 678
GsuI CTGGAG 1 cut(s) 999
HaeIII GGCC 3 cut(s) 126, 380, 485
HgaI GACGC 2 cut(s) 807, 1175
Hin1II CATG 5 cut(s) 362, 1027, 1044, 1111, 1155
HincII GTYRAC 2 cut(s) 107, 156
HindII GTYRAC 2 cut(s) 107, 156
HindIII AAGCTT 2 cut(s) 946, 1136
HinfI GANTC 5 cut(s) 190, 250, 891, 1027, 1148
HphI GGTGA 1 cut(s) 1123
Hpy166II GTNNAC 3 cut(s) 107, 131, 156
Hpy188I TCNGA 6 cut(s) 249, 672, 709, 750, 955, 1185
Hpy188III TCNNGA 4 cut(s) 79, 392, 427, 715
Hpy8I GTNNAC 3 cut(s) 107, 131, 156
Hpy99I CGWCG 1 cut(s) 1169
HpyAV CCTTC 4 cut(s) 152, 628, 667, 924
HpyCH4III ACNGT 2 cut(s) 151, 655
HpyCH4IV ACGT 1 cut(s) 544
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 287, 824
HpyF3I CTNAG 3 cut(s) 248, 706, 747
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 5 cut(s) 362, 1027, 1044, 1111, 1155
KpnI GGTACC 1 cut(s) 869
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 4 cut(s) 333, 429, 711, 955
LmnI GCTCC 2 cut(s) 144, 600
Lsp1109I GCAGC 4 cut(s) 304, 332, 553, 689
LweI GCATC 6 cut(s) 279, 362, 553, 654, 950, 1106
MaeI CTAG 1 cut(s) 1053
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 3, 90
MalI GATC 4 cut(s) 335, 431, 713, 957
MboI GATC 4 cut(s) 333, 429, 711, 955
MboII GAAGA 3 cut(s) 337, 380, 613
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 3 cut(s) 141, 840, 1063
MluCI AATT 5 cut(s) 96, 479, 701, 738, 927
MlyI GAGTC 3 cut(s) 259, 900, 1036
MmeI TCCRAC 3 cut(s) 49, 311, 763
MnlI CCTC 2 cut(s) 498, 591
Mph1103I ATGCAT 2 cut(s) 806, 1109
MseI TTAA 3 cut(s) 767, 875, 1140
MslI CAYNNNNRTG 3 cut(s) 905, 1102, 1106
MspCI CTTAAG 1 cut(s) 874
MspR9I CCNGG 1 cut(s) 187
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 182, 287, 824
NdeI CATATG 1 cut(s) 1103
NdeII GATC 4 cut(s) 333, 429, 711, 955
NlaIII CATG 5 cut(s) 362, 1027, 1044, 1111, 1155
NlaIV GGNNCC 2 cut(s) 486, 867
NsiI ATGCAT 2 cut(s) 806, 1109
NspI RCATGY 1 cut(s) 362
PfeI GAWTC 2 cut(s) 190, 1148
PflMI CCANNNNNTGG 2 cut(s) 101, 782
PkrI GCNGC 4 cut(s) 319, 322, 568, 679
PleI GAGTC 3 cut(s) 258, 899, 1035
PpsI GAGTC 3 cut(s) 258, 899, 1035
PshBI ATTAAT 1 cut(s) 767
Psp1406I AACGTT 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 486, 867
PspPI GGNCC 3 cut(s) 379, 484, 496
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 711
RsaI GTAC 4 cut(s) 232, 401, 665, 867
RsaNI GTAC 4 cut(s) 231, 400, 664, 866
RseI CAYNNNNRTG 3 cut(s) 905, 1102, 1106
SaqAI TTAA 3 cut(s) 767, 875, 1140
SatI GCNGC 4 cut(s) 318, 321, 567, 678
Sau3AI GATC 4 cut(s) 333, 429, 711, 955
Sau96I GGNCC 3 cut(s) 379, 484, 496
SchI GAGTC 3 cut(s) 259, 900, 1036
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 3 cut(s) 141, 840, 1063
SfaNI GCATC 6 cut(s) 279, 362, 553, 654, 950, 1106
SfcI CTRYAG 2 cut(s) 318, 1158
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 3 cut(s) 905, 1102, 1106
SmlI CTYRAG 1 cut(s) 874
SmoI CTYRAG 1 cut(s) 874
Sse9I AATT 5 cut(s) 96, 479, 701, 738, 927
SsiI CCGC 2 cut(s) 26, 1178
SspI AATATT 1 cut(s) 456
SspMI CTAG 1 cut(s) 1053
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 151, 655
TaiI ACGT 1 cut(s) 547
TaqI TCGA 1 cut(s) 1068
TasI AATT 5 cut(s) 96, 479, 701, 738, 927
TatI WGTACW 2 cut(s) 399, 663
TfiI GAWTC 2 cut(s) 190, 1148
Tru1I TTAA 3 cut(s) 767, 875, 1140
Tru9I TTAA 3 cut(s) 767, 875, 1140
TscAI CASTG 5 cut(s) 66, 141, 658, 840, 1063
TseI GCWGC 4 cut(s) 317, 320, 566, 677
TspDTI ATGAA 3 cut(s) 228, 527, 873
TspRI CASTG 5 cut(s) 66, 141, 658, 840, 1063
Van91I CCANNNNNTGG 2 cut(s) 101, 782
Vha464I CTTAAG 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 496
VspI ATTAAT 1 cut(s) 767
XceI RCATGY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 1038
XspI CTAG 1 cut(s) 1053
Zsp2I ATGCAT 2 cut(s) 806, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.