RLG00000029645

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016382
Physical Location & Seq
Reverse (-)
41974666 .. 41979171
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029645

Sequence Viewer

Length: 1290 bp
ATGAGGCCATTGTTTCACTTGCTCTTGCCTCTGTGTCTCCATTGGGTCGCTGAAGAAATGACCGTTTCTGTCCTTGTTGATGTTACTACTGCTGCACTTTGCCCCGCCCACTCCACCTGTTCTCAACCTATCTATATCACCGGCATTCAACAAACGATTGTTGGACTTTTCAAGATGGTGGTGTTGCCAATTCTTGGTCAACTCGCAGATGAGAATGGCCGTAAACCAGTGCTTCTTCTTACTGTGTCAACAACCATCTTCCCTTTCGCATTACTTGCCTGGAATCAATCCAAGGGATTTGTGTATGCTTATTATGTGCTTCGTACAATTTCATATATTCTGAGTCAGGGGAGTATATTCTGCATCGCTGTTGCTTATGTGGCAGATGTTGTCAGCGAAAATAATAGGGCTGCAGCATTTAGTTGGATCACAGGTCTCTTCTCTGCATCGCATGTGTTGGGAAATGTTCTGGCCCGTTTTCTTCCTGAGAAGGACATTTTCTATGTTTCAATAGCACTCCTGATCTTTTGTCCAGTTTATATGCAAATATTTTTGGTTGAGACAACTAATAAATTGGCCCCTCAAATGGACCAAGACTTGTCTTGCCTGACCAAGGGAGTTGCGATTATTCATAAACGTTATGTTTCAATGAGAGATGCTGCAACAATAGTTATGAGCAGTTCAACATTGAGGAGCATTTCTTTGGTTTCCTTCTTCTATGAGATGGGAATGTCTGGCATCAGCACTGTATTATTGTACTATCTGAAGGCAGCTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCTGATGATGGTGGGAATAGGCTCAATTGTCTCTCAGATGTTGGTGCTTCCATTAATCAATCCATTAGTTGGAGAGAAAGTGATACTATGCATATCCTTGTGTGCGTCAATAGCTTATGCAGTGCTCTATGGCTTGGCTTGGGCTTCTTGGGTACCATACTTAAGTGCTTCATTTGGAGTCATCTACGTCCTTGTGAAACCTTCCACTTTTGCAATTATTTCAAAAGCATCAAGCTTATCTGATCAGGGAAAGGTGCAAGGATTTATTGCTGGTGTGCAGTCCATATCAAGCCTGCTATCTCCAGTTGCCATGAGTCCATTGACATCATGGTTTCTATCTAGCAGTGCCCCTTTCGACTGCAAAGGTTTTAGCATAATATGTGCATCCATATGCATGGTGATATCCCTTTGTTATGCCTGCAAGCTTAAACCTGAATCATGCTCTACAGACGACGCTGAAGCACCGCTTCTGACTGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

430

Amino Acids

46.67

Weight (kDa)

6.91

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 48 - 370 2.7e-22 Major Facilitator Superfamily
MFS_1 PF07690 234 - 403 8.4e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 958
AccB1I GGYRCC 1 cut(s) 958
AccB7I CCANNNNNTGG 2 cut(s) 194, 875
AciI CCGC 2 cut(s) 105, 1271
AclI AACGTT 1 cut(s) 637
AclWI GGATC 2 cut(s) 434, 799
AcoI YGGCCR 1 cut(s) 217
AcuI CTGAAG 3 cut(s) 72, 785, 1284
AfaI GTAC 3 cut(s) 325, 758, 960
AfiI CCNNNNNNNGG 5 cut(s) 194, 586, 613, 814, 875
AflII CTTAAG 1 cut(s) 967
AgsI TTSAA 6 cut(s) 149, 172, 510, 648, 684, 1029
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 4 cut(s) 773, 920, 1041, 1231
AluI AGCT 4 cut(s) 773, 920, 1041, 1231
Alw21I GWGCWC 1 cut(s) 933
Alw26I GTCTC 4 cut(s) 41, 440, 554, 841
AlwI GGATC 2 cut(s) 434, 799
AoxI GGCC 4 cut(s) 5, 217, 471, 576
ApeKI GCWGC 5 cut(s) 92, 410, 413, 659, 770
AseI ATTAAT 1 cut(s) 860
Asp718I GGTACC 1 cut(s) 958
AspS9I GGNCC 3 cut(s) 472, 577, 589
AsuHPI GGTGA 2 cut(s) 130, 1216
AvaII GGWCC 1 cut(s) 589
BaeGI GKGCMC 1 cut(s) 1156
BanI GGYRCC 1 cut(s) 958
Bbv12I GWGCWC 1 cut(s) 933
BbvI GCAGC 5 cut(s) 79, 397, 425, 646, 782
BccI CCATC 4 cut(s) 169, 263, 718, 808
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 280
BclI TGATCA 1 cut(s) 1048
BcoDI GTCTC 4 cut(s) 41, 440, 554, 841
BfaI CTAG 1 cut(s) 1146
BfmI CTRYAG 2 cut(s) 411, 1251
BfrI CTTAAG 1 cut(s) 967
BisI GCNGC 5 cut(s) 93, 411, 414, 660, 771
BlsI GCNGC 5 cut(s) 94, 412, 415, 661, 772
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 589
BmgT120I GGNCC 3 cut(s) 472, 577, 589
BmiI GGNNCC 2 cut(s) 579, 960
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 6 cut(s) 372, 455, 646, 747, 1043, 1199
BpmI CTGGAG 1 cut(s) 1092
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 291, 612
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 194, 586, 613, 814, 875
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 3 cut(s) 227, 533, 1109
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 291, 612
BseGI GGATG 1 cut(s) 1190
BseLI CCNNNNNNNGG 5 cut(s) 194, 586, 613, 814, 875
BseMII CTCAG 4 cut(s) 332, 477, 813, 854
BseNI ACTGG 3 cut(s) 227, 533, 1109
BseRI GAGGAG 1 cut(s) 706
BseSI GKGCMC 1 cut(s) 1156
BseXI GCAGC 5 cut(s) 79, 397, 425, 646, 782
BsgI GTGCAG 2 cut(s) 78, 1103
BshFI GGCC 4 cut(s) 7, 219, 473, 578
BshNI GGYRCC 1 cut(s) 958
BsiHKAI GWGCWC 1 cut(s) 933
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 5 cut(s) 194, 586, 613, 814, 875
BsmAI GTCTC 4 cut(s) 41, 440, 554, 841
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 4 cut(s) 7, 219, 473, 578
Bso31I GGTCTC 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 933, 1156
Bsp143I GATC 4 cut(s) 426, 522, 804, 1048
BspACI CCGC 2 cut(s) 105, 1271
BspANI GGCC 4 cut(s) 7, 219, 473, 578
BspCNI CTCAG 4 cut(s) 333, 478, 812, 853
BspLI GGNNCC 2 cut(s) 579, 960
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 2 cut(s) 434, 799
BspT107I GGYRCC 1 cut(s) 958
BspTI CTTAAG 1 cut(s) 967
BspTNI GGTCTC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 3 cut(s) 227, 533, 1109
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 291, 612
BssMI GATC 4 cut(s) 426, 522, 804, 1048
BssT1I CCWWGG 2 cut(s) 291, 612
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 64, 244, 748
Bst6I CTCTTC 1 cut(s) 443
BstAFI CTTAAG 1 cut(s) 967
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 1100, 1225, 1229
BstDEI CTNAG 4 cut(s) 341, 486, 799, 840
BstENI CCTNNNNNAGG 1 cut(s) 611
BstF5I GGATG 1 cut(s) 1190
BstKTI GATC 4 cut(s) 429, 525, 807, 1051
BstMAI GTCTC 4 cut(s) 41, 440, 554, 841
BstMBI GATC 4 cut(s) 426, 522, 804, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 275, 380, 917
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 2 cut(s) 411, 1251
BstSLI GKGCMC 1 cut(s) 1156
BstV1I GCAGC 5 cut(s) 79, 397, 425, 646, 782
BstX2I RGATCY 1 cut(s) 804
BstXI CCANNNNNNTGG 1 cut(s) 1201
BstYI RGATCY 1 cut(s) 804
BsuRI GGCC 4 cut(s) 7, 219, 473, 578
BtgZI GCGATG 2 cut(s) 349, 432
BtsCI GGATG 1 cut(s) 1190
BtsI GCAGTG 2 cut(s) 933, 1156
BtsIMutI CAGTG 4 cut(s) 234, 744, 933, 1156
Cac8I GCNNGC 3 cut(s) 1100, 1225, 1229
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 472, 577, 589
CseI GACGC 2 cut(s) 900, 1268
Csp6I GTAC 3 cut(s) 324, 757, 959
CviAII CATG 5 cut(s) 452, 1117, 1134, 1201, 1245
CviQI GTAC 3 cut(s) 324, 757, 959
DdeI CTNAG 4 cut(s) 341, 486, 799, 840
DpnI GATC 4 cut(s) 428, 524, 806, 1050
DpnII GATC 4 cut(s) 426, 522, 804, 1048
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Eco130I CCWWGG 2 cut(s) 291, 612
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 1209
Eco47I GGWCC 1 cut(s) 589
Eco57I CTGAAG 3 cut(s) 72, 785, 1284
EcoNI CCTNNNNNAGG 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 278
EcoRV GATATC 1 cut(s) 1209
EcoT14I CCWWGG 2 cut(s) 291, 612
EcoT22I ATGCAT 2 cut(s) 899, 1202
ErhI CCWWGG 2 cut(s) 291, 612
FaeI CATG 5 cut(s) 455, 1120, 1137, 1204, 1248
FalI AAGNNNNNCTT 2 cut(s) 1257, 1289
FatI CATG 5 cut(s) 451, 1116, 1133, 1200, 1244
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 1196
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 5 cut(s) 93, 411, 414, 660, 771
FokI GGATG 1 cut(s) 1177
Fsp4HI GCNGC 5 cut(s) 93, 411, 414, 660, 771
FspBI CTAG 1 cut(s) 1146
GluI GCNGC 5 cut(s) 93, 411, 414, 660, 771
GsuI CTGGAG 1 cut(s) 1092
HaeIII GGCC 4 cut(s) 7, 219, 473, 578
HapII CCGG 1 cut(s) 141
HgaI GACGC 2 cut(s) 900, 1268
Hin1II CATG 5 cut(s) 455, 1120, 1137, 1204, 1248
HincII GTYRAC 2 cut(s) 200, 249
HindII GTYRAC 2 cut(s) 200, 249
HindIII AAGCTT 2 cut(s) 1039, 1229
HinfI GANTC 5 cut(s) 283, 343, 984, 1120, 1241
HpaII CCGG 1 cut(s) 141
HphI GGTGA 2 cut(s) 130, 1216
Hpy166II GTNNAC 3 cut(s) 200, 224, 249
Hpy188I TCNGA 6 cut(s) 342, 765, 802, 843, 1048, 1278
Hpy188III TCNNGA 4 cut(s) 172, 485, 520, 808
Hpy8I GTNNAC 3 cut(s) 200, 224, 249
Hpy99I CGWCG 1 cut(s) 1262
HpyAV CCTTC 4 cut(s) 484, 721, 760, 1017
HpyCH4III ACNGT 3 cut(s) 64, 244, 748
HpyCH4IV ACGT 2 cut(s) 637, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 380, 917
HpyF3I CTNAG 4 cut(s) 341, 486, 799, 840
HpySE526I ACGT 2 cut(s) 637, 993
Hsp92II CATG 5 cut(s) 455, 1120, 1137, 1204, 1248
KpnI GGTACC 1 cut(s) 962
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 4 cut(s) 426, 522, 804, 1048
LmnI GCTCC 1 cut(s) 693
Lsp1109I GCAGC 5 cut(s) 79, 397, 425, 646, 782
LweI GCATC 6 cut(s) 372, 455, 646, 747, 1043, 1199
MaeI CTAG 1 cut(s) 1146
MaeII ACGT 2 cut(s) 637, 993
MaeIII GTNAC 1 cut(s) 82
MalI GATC 4 cut(s) 428, 524, 806, 1050
MboI GATC 4 cut(s) 426, 522, 804, 1048
MboII GAAGA 6 cut(s) 65, 227, 250, 430, 473, 706
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 1 cut(s) 804
MhlI GDGCHC 2 cut(s) 933, 1156
MluCI AATT 6 cut(s) 189, 327, 572, 794, 831, 1020
MlyI GAGTC 3 cut(s) 352, 993, 1129
MmeI TCCRAC 3 cut(s) 142, 404, 856
MnlI CCTC 3 cut(s) 39, 591, 684
Mph1103I ATGCAT 2 cut(s) 899, 1202
MseI TTAA 3 cut(s) 860, 968, 1233
MslI CAYNNNNRTG 2 cut(s) 1195, 1199
MspCI CTTAAG 1 cut(s) 967
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 280
MunI CAATTG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 144
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 275, 380, 917
NdeI CATATG 1 cut(s) 1196
NdeII GATC 4 cut(s) 426, 522, 804, 1048
NlaIII CATG 5 cut(s) 455, 1120, 1137, 1204, 1248
NlaIV GGNNCC 2 cut(s) 579, 960
NsiI ATGCAT 2 cut(s) 899, 1202
NspI RCATGY 1 cut(s) 455
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 283, 1241
PflMI CCANNNNNTGG 2 cut(s) 194, 875
PkrI GCNGC 5 cut(s) 94, 412, 415, 661, 772
PleI GAGTC 3 cut(s) 351, 992, 1128
PpsI GAGTC 3 cut(s) 351, 992, 1128
PshBI ATTAAT 1 cut(s) 860
Psp1406I AACGTT 1 cut(s) 637
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 579, 960
PspPI GGNCC 3 cut(s) 472, 577, 589
PstI CTGCAG 1 cut(s) 415
PsuI RGATCY 1 cut(s) 804
RsaI GTAC 3 cut(s) 325, 758, 960
RsaNI GTAC 3 cut(s) 324, 757, 959
RseI CAYNNNNRTG 2 cut(s) 1195, 1199
SaqAI TTAA 3 cut(s) 860, 968, 1233
SatI GCNGC 5 cut(s) 93, 411, 414, 660, 771
Sau3AI GATC 4 cut(s) 426, 522, 804, 1048
Sau96I GGNCC 3 cut(s) 472, 577, 589
SchI GAGTC 3 cut(s) 352, 993, 1129
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 2 cut(s) 933, 1156
SfaNI GCATC 6 cut(s) 372, 455, 646, 747, 1043, 1199
SfcI CTRYAG 2 cut(s) 411, 1251
SinI GGWCC 1 cut(s) 589
SmiMI CAYNNNNRTG 2 cut(s) 1195, 1199
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
Sse9I AATT 6 cut(s) 189, 327, 572, 794, 831, 1020
SsiI CCGC 2 cut(s) 105, 1271
SspI AATATT 1 cut(s) 549
SspMI CTAG 1 cut(s) 1146
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 2 cut(s) 291, 612
TaaI ACNGT 3 cut(s) 64, 244, 748
TaiI ACGT 2 cut(s) 640, 996
TaqI TCGA 1 cut(s) 1161
TasI AATT 6 cut(s) 189, 327, 572, 794, 831, 1020
TatI WGTACW 1 cut(s) 756
TfiI GAWTC 2 cut(s) 283, 1241
Tru1I TTAA 3 cut(s) 860, 968, 1233
Tru9I TTAA 3 cut(s) 860, 968, 1233
TscAI CASTG 4 cut(s) 234, 751, 933, 1156
TseI GCWGC 5 cut(s) 92, 410, 413, 659, 770
TspDTI ATGAA 3 cut(s) 321, 620, 966
TspRI CASTG 4 cut(s) 234, 751, 933, 1156
Van91I CCANNNNNTGG 2 cut(s) 194, 875
Vha464I CTTAAG 1 cut(s) 967
VpaK11BI GGWCC 1 cut(s) 589
VspI ATTAAT 1 cut(s) 860
XagI CCTNNNNNAGG 1 cut(s) 611
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 1131
XspI CTAG 1 cut(s) 1146
Zsp2I ATGCAT 2 cut(s) 899, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.