Rh1DG133800

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016382
Physical Location & Seq
Forward (+)
28032212 .. 28037380
5169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG133800.1

Sequence Viewer

Length: 999 bp
ATGTTACTACTGCTGCTCTTTGCCCCGCCCACTCCACCTGTTCTCAACCTATCTATATCACTGATTGTTGGACTTTTCAAGATGGTGGTGTTACCAATTCTTGGTCAACTCGCAGATGAGAATGGCCGTAAACCAGTGCTCCTTCTTACTGTGTCTACAACCATATTCCCTTTTGCATTACTTGCCTGGAATCAGTCCAAGGGATTTGTGTATGCTTATTATGTGCTTCGTACAATTTCATATATTCTGAGTCAGGGGAGTATATTCTGCATCGCTGTTGCTTATGTGGCAGATGTTGTCAGTGAAAATAATAGGGCTGCAGCATTTAGTTGGATCACAGGTCTCTTCTCTGCATCGCATGTGTTGGGAAATGTTCTGGCCCGTTTTCTTCCCGAGAAGTACATTTTCTATGTTTCAATAGCACTCCTGATCTTTTGTCCAGTTTATATGCAAATATTTTTGGTTGAGACAACTAAAAAATTGGCCCCTCAAATGGACCAAGACTTGTCTTGCCTGACCAAGAGAGTTGCGATTATTCATAAACGTTATGTTTCAATGAGAGATGCTGCAACAATAGTTATGAGCAGTTCAACATTGAGGAGCATTTCTTTGGTTTCCTTCTTCTATGAGATGGGAATGTCTGGCATCAGCACTGTATTATTGTACTATCTGAAGGCAGCTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCTGATGATGGTGGGAATAGGCTCAATTGTCTCTCAGATGTTGGTGCTTCCATTAATCAATCCATTAGTTGGAGAGAAAGTGATACTATGCATATCCTTGTGTGCGTCAATAGCTTATGCAGTGCTCTATGGCTTGGCTTGGGCTTCTTGGGTACCATACTTAAGTGCTTCATTTGGAGTCATCTACGTCCTTGTGAAACCTTCCGTAAGTACATGTTTGATATCCTCAATAGTAACCATAAAGGAATTCTATTATATTCCACAAGAGATTATTAATCATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

332

Amino Acids

36.71

Weight (kDa)

8.91

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 19 - 314 1.5e-19 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 865
AccB7I CCANNNNNTGG 2 cut(s) 101, 782
AccI GTMKAC 1 cut(s) 155
AciI CCGC 1 cut(s) 26
AclI AACGTT 1 cut(s) 544
AclWI GGATC 2 cut(s) 341, 706
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 959
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 5 cut(s) 232, 401, 665, 867, 925
AfiI CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
AflII CTTAAG 1 cut(s) 874
AflIII ACRYGT 1 cut(s) 926
AgsI TTSAA 4 cut(s) 79, 417, 555, 591
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 680, 827
AluI AGCT 2 cut(s) 680, 827
Alw21I GWGCWC 2 cut(s) 141, 840
Alw26I GTCTC 3 cut(s) 347, 461, 748
AlwI GGATC 2 cut(s) 341, 706
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 3 cut(s) 124, 378, 483
ApeKI GCWGC 5 cut(s) 13, 317, 320, 566, 677
ApoI RAATTY 1 cut(s) 959
AseI ATTAAT 2 cut(s) 767, 987
Asp718I GGTACC 1 cut(s) 865
AspS9I GGNCC 3 cut(s) 379, 484, 496
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 865
Bbv12I GWGCWC 2 cut(s) 141, 840
BbvI GCAGC 4 cut(s) 304, 332, 553, 689
BccI CCATC 3 cut(s) 76, 625, 715
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 347, 461, 748
BfaI CTAG 1 cut(s) 997
BfmI CTRYAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 874
BisI GCNGC 5 cut(s) 14, 318, 321, 567, 678
BlsI GCNGC 5 cut(s) 15, 319, 322, 568, 679
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 379, 484, 496
BmiI GGNNCC 2 cut(s) 486, 867
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 4 cut(s) 279, 362, 553, 654
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 777, 807
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
Bse1I ACTGG 2 cut(s) 134, 440
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
BseMII CTCAG 3 cut(s) 239, 720, 761
BseNI ACTGG 2 cut(s) 134, 440
BseRI GAGGAG 1 cut(s) 613
BseXI GCAGC 4 cut(s) 304, 332, 553, 689
BshFI GGCC 3 cut(s) 126, 380, 485
BshNI GGYRCC 1 cut(s) 865
BsiHKAI GWGCWC 2 cut(s) 141, 840
BsiHKCI CYCGRG 1 cut(s) 392
BslI CCNNNNNNNGG 4 cut(s) 101, 493, 721, 782
BsmAI GTCTC 3 cut(s) 347, 461, 748
BsnI GGCC 3 cut(s) 126, 380, 485
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 141, 840
Bsp143I GATC 3 cut(s) 333, 429, 711
BspACI CCGC 1 cut(s) 26
BspANI GGCC 3 cut(s) 126, 380, 485
BspCNI CTCAG 3 cut(s) 240, 719, 760
BspLI GGNNCC 2 cut(s) 486, 867
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 2 cut(s) 341, 706
BspT107I GGYRCC 1 cut(s) 865
BspTI CTTAAG 1 cut(s) 874
BspTNI GGTCTC 1 cut(s) 347
BsrI ACTGG 2 cut(s) 134, 440
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 333, 429, 711
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 151, 655
Bst6I CTCTTC 1 cut(s) 350
BstAFI CTTAAG 1 cut(s) 874
BstAPI GCANNNNNTGC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 248, 706, 747
BstKTI GATC 3 cut(s) 336, 432, 714
BstMAI GTCTC 3 cut(s) 347, 461, 748
BstMBI GATC 3 cut(s) 333, 429, 711
BstMWI GCNNNNNNNGC 3 cut(s) 182, 287, 824
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 2 cut(s) 362, 930
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 4 cut(s) 304, 332, 553, 689
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 3 cut(s) 126, 380, 485
BtgZI GCGATG 2 cut(s) 256, 339
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 5 cut(s) 59, 141, 307, 651, 840
Cfr13I GGNCC 3 cut(s) 379, 484, 496
CseI GACGC 1 cut(s) 807
Csp6I GTAC 5 cut(s) 231, 400, 664, 866, 924
CviAII CATG 3 cut(s) 359, 927, 992
CviQI GTAC 5 cut(s) 231, 400, 664, 866, 924
DdeI CTNAG 3 cut(s) 248, 706, 747
DpnI GATC 3 cut(s) 335, 431, 713
DpnII GATC 3 cut(s) 333, 429, 711
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 936
Eco47I GGWCC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 692
Eco88I CYCGRG 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 362, 930, 995
FatI CATG 3 cut(s) 358, 926, 991
FauI CCCGC 1 cut(s) 33
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 5 cut(s) 14, 318, 321, 567, 678
Fsp4HI GCNGC 5 cut(s) 14, 318, 321, 567, 678
FspBI CTAG 1 cut(s) 997
GluI GCNGC 5 cut(s) 14, 318, 321, 567, 678
HaeIII GGCC 3 cut(s) 126, 380, 485
HgaI GACGC 1 cut(s) 807
Hin1II CATG 3 cut(s) 362, 930, 995
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 3 cut(s) 190, 250, 891
Hpy166II GTNNAC 3 cut(s) 107, 131, 156
Hpy188I TCNGA 4 cut(s) 249, 672, 709, 750
Hpy188III TCNNGA 4 cut(s) 79, 392, 427, 715
Hpy8I GTNNAC 3 cut(s) 107, 131, 156
HpyAV CCTTC 4 cut(s) 152, 628, 667, 924
HpyCH4III ACNGT 2 cut(s) 151, 655
HpyCH4IV ACGT 2 cut(s) 544, 900
HpyCH4V TGCA 8 cut(s) 176, 270, 320, 353, 451, 569, 804, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 287, 824
HpyF3I CTNAG 3 cut(s) 248, 706, 747
HpySE526I ACGT 2 cut(s) 544, 900
Hsp92II CATG 3 cut(s) 362, 930, 995
KpnI GGTACC 1 cut(s) 869
Kzo9I GATC 3 cut(s) 333, 429, 711
LmnI GCTCC 2 cut(s) 144, 600
Lsp1109I GCAGC 4 cut(s) 304, 332, 553, 689
LweI GCATC 4 cut(s) 279, 362, 553, 654
MaeI CTAG 1 cut(s) 997
MaeII ACGT 2 cut(s) 544, 900
MaeIII GTNAC 3 cut(s) 3, 90, 946
MalI GATC 3 cut(s) 335, 431, 713
MboI GATC 3 cut(s) 333, 429, 711
MboII GAAGA 3 cut(s) 337, 380, 613
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 2 cut(s) 141, 840
MluCI AATT 6 cut(s) 96, 234, 479, 701, 738, 959
MlyI GAGTC 2 cut(s) 259, 900
MmeI TCCRAC 3 cut(s) 49, 311, 763
MnlI CCTC 3 cut(s) 498, 591, 949
Mph1103I ATGCAT 1 cut(s) 806
MseI TTAA 3 cut(s) 767, 875, 987
MspCI CTTAAG 1 cut(s) 874
MspR9I CCNGG 1 cut(s) 187
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 182, 287, 824
NdeII GATC 3 cut(s) 333, 429, 711
NlaIII CATG 3 cut(s) 362, 930, 995
NlaIV GGNNCC 2 cut(s) 486, 867
NsiI ATGCAT 1 cut(s) 806
NspI RCATGY 2 cut(s) 362, 930
PciI ACATGT 1 cut(s) 926
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 2 cut(s) 101, 782
PkrI GCNGC 5 cut(s) 15, 319, 322, 568, 679
PleI GAGTC 2 cut(s) 258, 899
PpsI GAGTC 2 cut(s) 258, 899
PscI ACATGT 1 cut(s) 926
PshBI ATTAAT 2 cut(s) 767, 987
Psp1406I AACGTT 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 486, 867
PspPI GGNCC 3 cut(s) 379, 484, 496
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 711
RsaI GTAC 5 cut(s) 232, 401, 665, 867, 925
RsaNI GTAC 5 cut(s) 231, 400, 664, 866, 924
SaqAI TTAA 3 cut(s) 767, 875, 987
SatI GCNGC 5 cut(s) 14, 318, 321, 567, 678
Sau3AI GATC 3 cut(s) 333, 429, 711
Sau96I GGNCC 3 cut(s) 379, 484, 496
SchI GAGTC 2 cut(s) 259, 900
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 2 cut(s) 141, 840
SetI ASST 8 cut(s) 40, 51, 343, 547, 682, 829, 903, 916
SfaNI GCATC 4 cut(s) 279, 362, 553, 654
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 874
SmoI CTYRAG 1 cut(s) 874
Sse9I AATT 6 cut(s) 96, 234, 479, 701, 738, 959
SsiI CCGC 1 cut(s) 26
SspI AATATT 1 cut(s) 456
SspMI CTAG 1 cut(s) 997
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 151, 655
TaiI ACGT 2 cut(s) 547, 903
TasI AATT 6 cut(s) 96, 234, 479, 701, 738, 959
TatI WGTACW 3 cut(s) 399, 663, 923
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 3 cut(s) 767, 875, 987
Tru9I TTAA 3 cut(s) 767, 875, 987
TscAI CASTG 5 cut(s) 66, 141, 307, 658, 840
TseI GCWGC 5 cut(s) 13, 317, 320, 566, 677
TspDTI ATGAA 3 cut(s) 228, 527, 873
TspGWI ACGGA 1 cut(s) 907
TspRI CASTG 5 cut(s) 66, 141, 307, 658, 840
Van91I CCANNNNNTGG 2 cut(s) 101, 782
Vha464I CTTAAG 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 496
VspI ATTAAT 2 cut(s) 767, 987
XapI RAATTY 1 cut(s) 959
XceI RCATGY 2 cut(s) 362, 930
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 1 cut(s) 997
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.