Rh1AG128100

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016382
Physical Location & Seq
Forward (+)
24135375 .. 24140581
5207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG128100.1

Sequence Viewer

Length: 966 bp
ATGTTACTACTACTGCTCTTTGCCCCGCCCACTCCACCTGTTCTCAACCTATCTATATCACTGATTGTTGGACTTTTCAAGATGGTGGTGTTACCAATTCTTGGTCAACTCGCAGATGAGAATGGCCGTAAACCAGTGCTCCTTCTTACTGTGTCAACAACCATATTCCCTTTTGCATTACTTGCCTGGAATCAGTCCAAGGGATTTGTGTATGCTTATTATGTGCTTCGTACATTTTCATATATTCTGAGTCAGGGGAGTATATTCTGCATCGCTGTTGCTTATGTGGCAGATGTTGTCAGCGAAAATAATAGGGCTGCAGCATTTAGTTGGATCACAGGTCTCTTCTCTGCATCGCATGTGTTGGGAAATGTTCTGGCCCGTTTTCTTCCCGAGAAGTACATTTTCTATGTTTCAATAGCACTCCTGATCTTTTGTCCAGTTTATATGCAAATATTTTTGGTTGAGACAACAAAAAAATTGGCCCCTCAAATGGACCAAGACTTGTCTTGCCTGACCAAGAGAGTTGCCATTATTCATAAACGTTATGTTTCAATGAGAGATGCTGCAACAATAGTTATGAGCAGTTCAACATTGAGGAGCATTTCTTTGGTTTCCTTCTTCTATGAGATGGGAATGTCTGGCATCAGCACTGTATTATTGTACTATCTGAAGGCAGCTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCTGATGATGGTGGGAATAGGCTCAATTGTCTCTCAGATGTTGGTGCTTCCATTAATCAATCCATTAGTTGGAGAGAAAGTGATACTATGCATATCCTTGTGTGCGTCAATAGCTTATGTAAGTCATTTTCTTCAGTTGTGCCCTATAGAAGGAAAAGAGACGCAACAAAAAGAGAAAAATCTAATGTTGCTTTTTAATGTACAGGCAGTGCTCTATGGCTTGGCTTGGGCTTCTTGGGTATGCATAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

321

Amino Acids

35.67

Weight (kDa)

8.88

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 19 - 282 2.2e-18 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 101, 782
AciI CCGC 1 cut(s) 26
AclI AACGTT 1 cut(s) 544
AclWI GGATC 2 cut(s) 341, 706
AcoI YGGCCR 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 692, 830
AfaI GTAC 4 cut(s) 232, 401, 665, 915
AfiI CCNNNNNNNGG 5 cut(s) 101, 493, 721, 782, 863
AgsI TTSAA 4 cut(s) 79, 417, 555, 591
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 3 cut(s) 680, 827, 963
AluI AGCT 3 cut(s) 680, 827, 963
Alw21I GWGCWC 2 cut(s) 141, 927
Alw26I GTCTC 4 cut(s) 347, 461, 748, 866
AlwI GGATC 2 cut(s) 341, 706
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 3 cut(s) 124, 378, 483
ApeKI GCWGC 4 cut(s) 317, 320, 566, 677
AseI ATTAAT 1 cut(s) 767
AspS9I GGNCC 3 cut(s) 379, 484, 496
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 857
Bbv12I GWGCWC 2 cut(s) 141, 927
BbvI GCAGC 4 cut(s) 304, 332, 553, 689
BccI CCATC 3 cut(s) 76, 625, 715
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 187
BcoDI GTCTC 4 cut(s) 347, 461, 748, 866
BfmI CTRYAG 2 cut(s) 318, 858
BisI GCNGC 4 cut(s) 318, 321, 567, 678
BlsI GCNGC 4 cut(s) 319, 322, 568, 679
Bme1390I CCNGG 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 379, 484, 496
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 4 cut(s) 279, 362, 553, 654
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 777, 807
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 493, 721, 782, 863
Bse1I ACTGG 2 cut(s) 134, 440
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 101, 493, 721, 782, 863
BseMII CTCAG 3 cut(s) 239, 720, 761
BseNI ACTGG 2 cut(s) 134, 440
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 857
BseXI GCAGC 4 cut(s) 304, 332, 553, 689
BshFI GGCC 3 cut(s) 126, 380, 485
BsiHKAI GWGCWC 2 cut(s) 141, 927
BsiHKCI CYCGRG 1 cut(s) 392
BslI CCNNNNNNNGG 5 cut(s) 101, 493, 721, 782, 863
BsmAI GTCTC 4 cut(s) 347, 461, 748, 866
BsmBI CGTCTC 1 cut(s) 866
BsnI GGCC 3 cut(s) 126, 380, 485
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 3 cut(s) 141, 857, 927
Bsp1407I TGTACA 1 cut(s) 913
Bsp143I GATC 3 cut(s) 333, 429, 711
BspACI CCGC 1 cut(s) 26
BspANI GGCC 3 cut(s) 126, 380, 485
BspCNI CTCAG 3 cut(s) 240, 719, 760
BspLI GGNNCC 1 cut(s) 486
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 2 cut(s) 341, 706
BspTNI GGTCTC 1 cut(s) 347
BsrGI TGTACA 1 cut(s) 913
BsrI ACTGG 2 cut(s) 134, 440
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 3 cut(s) 333, 429, 711
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 151, 655
Bst6I CTCTTC 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 913
BstDEI CTNAG 3 cut(s) 248, 706, 747
BstENI CCTNNNNNAGG 1 cut(s) 861
BstKTI GATC 3 cut(s) 336, 432, 714
BstMAI GTCTC 4 cut(s) 347, 461, 748, 866
BstMBI GATC 3 cut(s) 333, 429, 711
BstMWI GCNNNNNNNGC 3 cut(s) 182, 287, 824
BstNI CCWGG 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 185
BstSFI CTRYAG 2 cut(s) 318, 858
BstSLI GKGCMC 1 cut(s) 857
BstV1I GCAGC 4 cut(s) 304, 332, 553, 689
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 3 cut(s) 126, 380, 485
BtgZI GCGATG 2 cut(s) 256, 339
BtsI GCAGTG 1 cut(s) 927
BtsIMutI CAGTG 4 cut(s) 59, 141, 651, 927
Cfr13I GGNCC 3 cut(s) 379, 484, 496
CseI GACGC 2 cut(s) 807, 883
Csp6I GTAC 4 cut(s) 231, 400, 664, 914
CviAII CATG 1 cut(s) 359
CviQI GTAC 4 cut(s) 231, 400, 664, 914
DdeI CTNAG 3 cut(s) 248, 706, 747
DpnI GATC 3 cut(s) 335, 431, 713
DpnII GATC 3 cut(s) 333, 429, 711
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 496
Eco57I CTGAAG 2 cut(s) 692, 830
Eco88I CYCGRG 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 198
EcoT22I ATGCAT 2 cut(s) 806, 959
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 1 cut(s) 362
FatI CATG 1 cut(s) 358
FauI CCCGC 1 cut(s) 33
Fnu4HI GCNGC 4 cut(s) 318, 321, 567, 678
Fsp4HI GCNGC 4 cut(s) 318, 321, 567, 678
GluI GCNGC 4 cut(s) 318, 321, 567, 678
HaeIII GGCC 3 cut(s) 126, 380, 485
HgaI GACGC 2 cut(s) 807, 883
Hin1II CATG 1 cut(s) 362
HincII GTYRAC 2 cut(s) 107, 156
HindII GTYRAC 2 cut(s) 107, 156
HinfI GANTC 2 cut(s) 190, 250
Hpy166II GTNNAC 3 cut(s) 107, 131, 156
Hpy188I TCNGA 4 cut(s) 249, 672, 709, 750
Hpy188III TCNNGA 4 cut(s) 79, 392, 427, 715
Hpy8I GTNNAC 3 cut(s) 107, 131, 156
HpyAV CCTTC 4 cut(s) 152, 628, 667, 857
HpyCH4III ACNGT 2 cut(s) 151, 655
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 8 cut(s) 176, 270, 320, 353, 451, 569, 804, 957
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 287, 824
HpyF3I CTNAG 3 cut(s) 248, 706, 747
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 1 cut(s) 362
Kzo9I GATC 3 cut(s) 333, 429, 711
LmnI GCTCC 2 cut(s) 144, 600
Lsp1109I GCAGC 4 cut(s) 304, 332, 553, 689
LweI GCATC 4 cut(s) 279, 362, 553, 654
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 3, 90
MalI GATC 3 cut(s) 335, 431, 713
MboI GATC 3 cut(s) 333, 429, 711
MboII GAAGA 4 cut(s) 337, 380, 613, 836
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 3 cut(s) 141, 857, 927
MluCI AATT 4 cut(s) 96, 479, 701, 738
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 3 cut(s) 49, 311, 763
MnlI CCTC 2 cut(s) 498, 591
Mph1103I ATGCAT 2 cut(s) 806, 959
MseI TTAA 2 cut(s) 767, 909
MspR9I CCNGG 1 cut(s) 187
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 182, 287, 824
NdeII GATC 3 cut(s) 333, 429, 711
NlaIII CATG 1 cut(s) 362
NlaIV GGNNCC 1 cut(s) 486
NsiI ATGCAT 2 cut(s) 806, 959
NspI RCATGY 1 cut(s) 362
PfeI GAWTC 1 cut(s) 190
PflMI CCANNNNNTGG 2 cut(s) 101, 782
PkrI GCNGC 4 cut(s) 319, 322, 568, 679
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshBI ATTAAT 1 cut(s) 767
Psp1406I AACGTT 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 3 cut(s) 379, 484, 496
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 711
RsaI GTAC 4 cut(s) 232, 401, 665, 915
RsaNI GTAC 4 cut(s) 231, 400, 664, 914
SaqAI TTAA 2 cut(s) 767, 909
SatI GCNGC 4 cut(s) 318, 321, 567, 678
Sau3AI GATC 3 cut(s) 333, 429, 711
Sau96I GGNCC 3 cut(s) 379, 484, 496
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 3 cut(s) 141, 857, 927
SetI ASST 7 cut(s) 40, 51, 343, 547, 682, 829, 965
SfaNI GCATC 4 cut(s) 279, 362, 553, 654
SfcI CTRYAG 2 cut(s) 318, 858
SinI GGWCC 1 cut(s) 496
Sse9I AATT 4 cut(s) 96, 479, 701, 738
SsiI CCGC 1 cut(s) 26
SspI AATATT 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 151, 655
TaiI ACGT 1 cut(s) 547
TasI AATT 4 cut(s) 96, 479, 701, 738
TatI WGTACW 3 cut(s) 399, 663, 913
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 767, 909
Tru9I TTAA 2 cut(s) 767, 909
TscAI CASTG 4 cut(s) 66, 141, 658, 927
TseI GCWGC 4 cut(s) 317, 320, 566, 677
TspDTI ATGAA 2 cut(s) 228, 527
TspRI CASTG 4 cut(s) 66, 141, 658, 927
Van91I CCANNNNNTGG 2 cut(s) 101, 782
VpaK11BI GGWCC 1 cut(s) 496
VspI ATTAAT 1 cut(s) 767
XagI CCTNNNNNAGG 1 cut(s) 861
XceI RCATGY 1 cut(s) 362
Zsp2I ATGCAT 2 cut(s) 806, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.