Rmu_sc0004239.1_g000022

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004239.1
OG0016382
Physical Location & Seq
Forward (+)
86822 .. 91248
4427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004239.1_g000022.1.cds

Sequence Viewer

Length: 1128 bp
atggcttggaagactagttatggtggtttcaaagagatgaggccattgtttcacttgctcttgcctctgtgtctccattgggtcgctgaagaaatgaccgtttctgtccttgttgatgttactactactgctctttgccccgcccactccacctgttctcaacctatctatatcactggtattcaacaaacgattgttggacttttcaagatggtggtgttaccaattcttggtcaactcgcagatgagaatggccgtaaaccagtgctccttcttacggtgtcaacaaccatattcccttttgcattacttgcctggaatcagtccaagggatttgtgtatgcttattatgtgcttcgtacaatttcatatattctgagtcaggggagtatattctgcatcgctgttgcttatgtggcagatgttgtcagcgaaaataatagagctgcagcatttagttggatcacaggtctcttctctgcatcgcatgtgttgggaaatgttctggcccgttttcttcccgagaagtacattttctatgtttcaatagcactcctgatcttttgtccagtttatatgcaaatatttttggttgagacaactaaaaaattggcccctcaaatggaccaagacttgtcttgcctgaccaagagagttgcgattattcataaacgttatgtttcaatgagagatgctgcaacaatagttatgagcagttcaacattgaggagcatttctttggtttccttcttctatgagatgggaatgtctggcatcagcactgtattattgtactatctgaaggcagcttttggttttgacaaaaatcaattctcagagatcctgatgatggtgggaataggctcaattgtctctcagatgttggtgcttccattaatcaatccattagttggagagaaagtgatactatgcatatccttgtgtgcgtcaatagcttattgctctatggcttggcttgggcttcttggtgcccctttcgactgcaaaggttttagcataatatgtgcatccatatgcatggtgatatccctttgttatgcctgcaagcttaaacctgaatcatgctctacagacgacgctgaagcaccgcttctgactgatatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

375

Amino Acids

41.32

Weight (kDa)

7.84

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 989
AccB7I CCANNNNNTGG 2 cut(s) 230, 911
AciI CCGC 2 cut(s) 141, 1109
AclI AACGTT 1 cut(s) 673
AclWI GGATC 2 cut(s) 470, 835
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 3 cut(s) 108, 821, 1122
AfaI GTAC 3 cut(s) 361, 530, 794
AfiI CCNNNNNNNGG 5 cut(s) 230, 277, 622, 850, 911
AgsI TTSAA 6 cut(s) 31, 185, 208, 546, 684, 720
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 4 cut(s) 446, 809, 956, 1069
AluI AGCT 4 cut(s) 446, 809, 956, 1069
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 4 cut(s) 77, 476, 590, 877
AlwI GGATC 2 cut(s) 470, 835
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 4 cut(s) 41, 253, 507, 612
ApeKI GCWGC 4 cut(s) 446, 449, 695, 806
AseI ATTAAT 1 cut(s) 896
AspS9I GGNCC 3 cut(s) 508, 613, 625
AsuHPI GGTGA 1 cut(s) 1054
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 994
BanI GGYRCC 1 cut(s) 989
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 4 cut(s) 433, 461, 682, 818
BccI CCATC 3 cut(s) 205, 754, 844
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 77, 476, 590, 877
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 2 cut(s) 447, 1089
BisI GCNGC 4 cut(s) 447, 450, 696, 807
BlsI GCNGC 4 cut(s) 448, 451, 697, 808
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 508, 613, 625
BmiI GGNNCC 2 cut(s) 615, 991
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 5 cut(s) 408, 491, 682, 783, 1037
BpiI GAAGAC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 906, 936
Bsc4I CCNNNNNNNGG 5 cut(s) 230, 277, 622, 850, 911
Bse1I ACTGG 3 cut(s) 181, 263, 569
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 1028
BseLI CCNNNNNNNGG 5 cut(s) 230, 277, 622, 850, 911
BseMII CTCAG 3 cut(s) 368, 849, 890
BseNI ACTGG 3 cut(s) 181, 263, 569
BseRI GAGGAG 1 cut(s) 742
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 4 cut(s) 433, 461, 682, 818
BshFI GGCC 4 cut(s) 43, 255, 509, 614
BshNI GGYRCC 1 cut(s) 989
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 521
BslI CCNNNNNNNGG 5 cut(s) 230, 277, 622, 850, 911
BsmAI GTCTC 4 cut(s) 77, 476, 590, 877
BsnI GGCC 4 cut(s) 43, 255, 509, 614
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 270, 994
Bsp143I GATC 3 cut(s) 462, 558, 840
BspACI CCGC 2 cut(s) 141, 1109
BspANI GGCC 4 cut(s) 43, 255, 509, 614
BspCNI CTCAG 3 cut(s) 369, 848, 889
BspLI GGNNCC 2 cut(s) 615, 991
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 470, 835
BspT107I GGYRCC 1 cut(s) 989
BspTNI GGTCTC 1 cut(s) 476
BsrI ACTGG 3 cut(s) 181, 263, 569
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 3 cut(s) 462, 558, 840
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 100, 280, 784
Bst6I CTCTTC 1 cut(s) 479
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 2 cut(s) 1063, 1067
BstDEI CTNAG 3 cut(s) 377, 835, 876
BstF5I GGATG 1 cut(s) 1028
BstKTI GATC 3 cut(s) 465, 561, 843
BstMAI GTCTC 4 cut(s) 77, 476, 590, 877
BstMBI GATC 3 cut(s) 462, 558, 840
BstMWI GCNNNNNNNGC 3 cut(s) 311, 416, 953
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 447, 1089
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 4 cut(s) 433, 461, 682, 818
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 840
BstXI CCANNNNNNTGG 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 840
BsuRI GGCC 4 cut(s) 43, 255, 509, 614
BtgZI GCGATG 2 cut(s) 385, 468
BtsCI GGATG 1 cut(s) 1028
BtsIMutI CAGTG 3 cut(s) 174, 270, 780
Cac8I GCNNGC 2 cut(s) 1063, 1067
Cfr13I GGNCC 3 cut(s) 508, 613, 625
CseI GACGC 2 cut(s) 936, 1106
Csp6I GTAC 3 cut(s) 360, 529, 793
CviAII CATG 3 cut(s) 488, 1039, 1083
CviQI GTAC 3 cut(s) 360, 529, 793
DdeI CTNAG 3 cut(s) 377, 835, 876
DpnI GATC 3 cut(s) 464, 560, 842
DpnII GATC 3 cut(s) 462, 558, 840
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 1047
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 3 cut(s) 108, 821, 1122
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 1047
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 2 cut(s) 935, 1040
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 3 cut(s) 491, 1042, 1086
FalI AAGNNNNNCTT 2 cut(s) 1095, 1127
FatI CATG 3 cut(s) 487, 1038, 1082
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 1034
Fnu4HI GCNGC 4 cut(s) 447, 450, 696, 807
FokI GGATG 1 cut(s) 1015
Fsp4HI GCNGC 4 cut(s) 447, 450, 696, 807
FspBI CTAG 1 cut(s) 15
GluI GCNGC 4 cut(s) 447, 450, 696, 807
HaeIII GGCC 4 cut(s) 43, 255, 509, 614
HgaI GACGC 2 cut(s) 936, 1106
Hin1II CATG 3 cut(s) 491, 1042, 1086
HincII GTYRAC 2 cut(s) 236, 285
HindII GTYRAC 2 cut(s) 236, 285
HindIII AAGCTT 1 cut(s) 1067
HinfI GANTC 3 cut(s) 319, 379, 1079
HphI GGTGA 1 cut(s) 1054
Hpy166II GTNNAC 3 cut(s) 236, 260, 285
Hpy188I TCNGA 5 cut(s) 378, 801, 838, 879, 1116
Hpy188III TCNNGA 4 cut(s) 208, 521, 556, 844
Hpy8I GTNNAC 3 cut(s) 236, 260, 285
Hpy99I CGWCG 1 cut(s) 1100
HpyAV CCTTC 3 cut(s) 281, 757, 796
HpyCH4III ACNGT 3 cut(s) 100, 280, 784
HpyCH4IV ACGT 1 cut(s) 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 416, 953
HpyF3I CTNAG 3 cut(s) 377, 835, 876
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 3 cut(s) 491, 1042, 1086
Kzo9I GATC 3 cut(s) 462, 558, 840
LmnI GCTCC 2 cut(s) 273, 729
Lsp1109I GCAGC 4 cut(s) 433, 461, 682, 818
LweI GCATC 5 cut(s) 408, 491, 682, 783, 1037
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 2 cut(s) 118, 219
MalI GATC 3 cut(s) 464, 560, 842
MboI GATC 3 cut(s) 462, 558, 840
MboII GAAGA 5 cut(s) 22, 101, 466, 509, 742
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 1 cut(s) 840
MhlI GDGCHC 2 cut(s) 270, 994
MluCI AATT 5 cut(s) 225, 363, 608, 830, 867
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 3 cut(s) 178, 440, 892
MnlI CCTC 4 cut(s) 33, 75, 627, 720
Mph1103I ATGCAT 2 cut(s) 935, 1040
MseI TTAA 2 cut(s) 896, 1071
MslI CAYNNNNRTG 2 cut(s) 1033, 1037
MspR9I CCNGG 1 cut(s) 316
MunI CAATTG 1 cut(s) 867
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 311, 416, 953
NdeI CATATG 1 cut(s) 1034
NdeII GATC 3 cut(s) 462, 558, 840
NlaIII CATG 3 cut(s) 491, 1042, 1086
NlaIV GGNNCC 2 cut(s) 615, 991
NsiI ATGCAT 2 cut(s) 935, 1040
NspI RCATGY 1 cut(s) 491
PfeI GAWTC 2 cut(s) 319, 1079
PflMI CCANNNNNTGG 2 cut(s) 230, 911
PkrI GCNGC 4 cut(s) 448, 451, 697, 808
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PshBI ATTAAT 1 cut(s) 896
Psp1406I AACGTT 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 615, 991
PspPI GGNCC 3 cut(s) 508, 613, 625
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 840
RsaI GTAC 3 cut(s) 361, 530, 794
RsaNI GTAC 3 cut(s) 360, 529, 793
RseI CAYNNNNRTG 2 cut(s) 1033, 1037
SaqAI TTAA 2 cut(s) 896, 1071
SatI GCNGC 4 cut(s) 447, 450, 696, 807
Sau3AI GATC 3 cut(s) 462, 558, 840
Sau96I GGNCC 3 cut(s) 508, 613, 625
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 2 cut(s) 270, 994
SfaNI GCATC 5 cut(s) 408, 491, 682, 783, 1037
SfcI CTRYAG 2 cut(s) 447, 1089
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 2 cut(s) 1033, 1037
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 5 cut(s) 225, 363, 608, 830, 867
SsiI CCGC 2 cut(s) 141, 1109
SspI AATATT 1 cut(s) 585
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 3 cut(s) 100, 280, 784
TaiI ACGT 1 cut(s) 676
TaqI TCGA 1 cut(s) 999
TasI AATT 5 cut(s) 225, 363, 608, 830, 867
TatI WGTACW 2 cut(s) 528, 792
TfiI GAWTC 2 cut(s) 319, 1079
Tru1I TTAA 2 cut(s) 896, 1071
Tru9I TTAA 2 cut(s) 896, 1071
TscAI CASTG 3 cut(s) 181, 270, 787
TseI GCWGC 4 cut(s) 446, 449, 695, 806
TspDTI ATGAA 2 cut(s) 357, 656
TspRI CASTG 3 cut(s) 181, 270, 787
Van91I CCANNNNNTGG 2 cut(s) 230, 911
VpaK11BI GGWCC 1 cut(s) 625
VspI ATTAAT 1 cut(s) 896
XceI RCATGY 1 cut(s) 491
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 2 cut(s) 935, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.