Rorug01G0104100

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016382
Physical Location & Seq
Forward (+)
17345965 .. 17348918
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0104100.1

Sequence Viewer

Length: 717 bp
ATGAGTCATAAAGGATTGATATATAGCTTTGTTGCCAAAGGAGGTGTCGTCTTAGCAGAGCACACCTCGTTCTCTGGAAACTTTAGCACCATTGCTGTTCAATGCTTACAGAAGCTACCTTCCAGTAGCAGCAAGTACACGTACTCGTGTGATGGCTACACATTTAACTTCCTCCTTGACAATGGATTTGTTTTTCTTGTTGTTGCGGATGAATCGGTTGGGAGGAGTGTGCCTTTTGTTTTCCTTGAACGAGTAAAAGCTGATTTTATGCAGCGTTATGGTGCAAGTATTAAAAATGAAGGTCCACATCCGCTTGCAGATGAAGATGAAGATGATGACTTATTTGAAGACCGATTTAGCATTGCTTATAATCTGGACAGAGAATTTGGGCCAAAGCTTAAGGAGCACATGCAATACTGCATGGAGCACCCAGAGGAAATAAGTAAACTTTCCAAACTAAAGGCTCAAATCACGGACGTCAAAGGCATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAGAAAATTGAACTTCTCGTGGACAAATCTGAAAATCTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAAGGAAGGCAATTGCGACGCAAGATGTGGCTGCAGAGTCTCCAAATGAAGCTAATGATAGGAGGAGGAATCTTTGCTCTGATCGTCATACTATGGCTTATTGCCTGTGGAGGTTTCAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

238

Amino Acids

27.05

Weight (kDa)

5.78

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 32 - 103 3.6e-20 Regulated-SNARE-like domain
Synaptobrevin PF00957 149 - 229 1.9e-28 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AatII GACGTC 1 cut(s) 480
AciI CCGC 2 cut(s) 206, 311
AclWI GGATC 1 cut(s) 525
AcsI RAATTY 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 2 cut(s) 137, 143
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 5 cut(s) 101, 248, 347, 536, 709
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 6 cut(s) 27, 115, 260, 397, 582, 643
AluI AGCT 6 cut(s) 27, 115, 260, 397, 582, 643
Alw21I GWGCWC 3 cut(s) 63, 408, 429
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 1 cut(s) 525
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 129, 271, 622
ApoI RAATTY 1 cut(s) 383
ArsI GACNNNNNNTTYG 6 cut(s) 30, 62, 170, 202, 368, 400
AspS9I GGNCC 2 cut(s) 302, 389
AvaII GGWCC 1 cut(s) 302
BauI CACGAG 2 cut(s) 145, 542
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 3 cut(s) 63, 408, 429
BbvI GCAGC 3 cut(s) 141, 283, 609
BccI CCATC 2 cut(s) 146, 487
BciT130I CCWGG 1 cut(s) 572
BcoDI GTCTC 1 cut(s) 635
BfmI CTRYAG 2 cut(s) 563, 623
BfrI CTTAAG 1 cut(s) 398
BisI GCNGC 3 cut(s) 130, 272, 623
BlsI GCNGC 3 cut(s) 131, 273, 624
Bme1390I CCNGG 1 cut(s) 572
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 302, 389
BmrFI CCNGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 354
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BsaAI YACGTR 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 2 cut(s) 90, 360
BseBI CCWGG 1 cut(s) 572
BseGI GGATG 2 cut(s) 214, 307
BseMI GCAATG 2 cut(s) 90, 360
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 238, 669
BseXI GCAGC 3 cut(s) 141, 283, 609
BshFI GGCC 1 cut(s) 391
BsiHKAI GWGCWC 3 cut(s) 63, 408, 429
BsmAI GTCTC 1 cut(s) 635
BsnI GGCC 1 cut(s) 391
Bsp1286I GDGCHC 3 cut(s) 63, 408, 429
Bsp143I GATC 2 cut(s) 517, 672
BspACI CCGC 2 cut(s) 206, 311
BspANI GGCC 1 cut(s) 391
BspMAI CTGCAG 2 cut(s) 567, 627
BspPI GGATC 1 cut(s) 525
BspTI CTTAAG 1 cut(s) 398
BsrDI GCAATG 2 cut(s) 90, 360
BsrI ACTGG 1 cut(s) 123
BssMI GATC 2 cut(s) 517, 672
BssNI GRCGYC 1 cut(s) 477
BssSI CACGAG 2 cut(s) 145, 542
Bst2BI CACGAG 2 cut(s) 145, 542
Bst2UI CCWGG 1 cut(s) 572
BstACI GRCGYC 1 cut(s) 477
BstAFI CTTAAG 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 2 cut(s) 214, 307
BstKTI GATC 2 cut(s) 520, 675
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 2 cut(s) 517, 672
BstMWI GCNNNNNNNGC 2 cut(s) 403, 598
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 570
BstSFI CTRYAG 2 cut(s) 563, 623
BstV1I GCAGC 3 cut(s) 141, 283, 609
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 214, 307
Cac8I GCNNGC 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 302, 389
CseI GACGC 1 cut(s) 618
Csp6I GTAC 2 cut(s) 136, 142
CviAII CATG 2 cut(s) 409, 421
CviQI GTAC 2 cut(s) 136, 142
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 519, 674
DpnII GATC 2 cut(s) 517, 672
Eco47I GGWCC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 570
FaeI CATG 2 cut(s) 412, 424
FatI CATG 2 cut(s) 408, 420
Fnu4HI GCNGC 3 cut(s) 130, 272, 623
FokI GGATG 2 cut(s) 221, 294
Fsp4HI GCNGC 3 cut(s) 130, 272, 623
GluI GCNGC 3 cut(s) 130, 272, 623
HaeIII GGCC 1 cut(s) 391
HgaI GACGC 1 cut(s) 618
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 2 cut(s) 412, 424
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 4, 212, 628, 660
Hpy166II GTNNAC 4 cut(s) 138, 305, 446, 547
Hpy188I TCNGA 2 cut(s) 556, 672
Hpy188III TCNNGA 3 cut(s) 75, 374, 586
Hpy8I GTNNAC 4 cut(s) 138, 305, 446, 547
Hpy99I CGWCG 1 cut(s) 612
HpyAV CCTTC 4 cut(s) 129, 293, 502, 591
HpyCH4IV ACGT 2 cut(s) 140, 477
HpyCH4V TGCA 7 cut(s) 271, 284, 317, 412, 420, 565, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 403, 598
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 2 cut(s) 140, 477
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 2 cut(s) 412, 424
Kzo9I GATC 2 cut(s) 517, 672
LmnI GCTCC 2 cut(s) 403, 424
LpnPI CCDG 8 cut(s) 60, 136, 359, 444, 557, 584, 599, 709
Lsp1109I GCAGC 3 cut(s) 141, 283, 609
MaeII ACGT 2 cut(s) 140, 477
MalI GATC 2 cut(s) 519, 674
MboI GATC 2 cut(s) 517, 672
MboII GAAGA 3 cut(s) 335, 341, 359
MfeI CAATTG 1 cut(s) 602
MhlI GDGCHC 3 cut(s) 63, 408, 429
MluCI AATT 3 cut(s) 383, 531, 602
MlyI GAGTC 2 cut(s) 13, 637
MnlI CCTC 9 cut(s) 35, 76, 182, 216, 427, 582, 647, 650, 695
MseI TTAA 3 cut(s) 165, 291, 399
MslI CAYNNNNRTG 1 cut(s) 491
MspCI CTTAAG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 572
MunI CAATTG 1 cut(s) 602
MvaI CCWGG 1 cut(s) 572
MwoI GCNNNNNNNGC 2 cut(s) 403, 598
NdeII GATC 2 cut(s) 517, 672
NlaIII CATG 2 cut(s) 412, 424
NspI RCATGY 1 cut(s) 412
PfeI GAWTC 2 cut(s) 212, 660
PkrI GCNGC 3 cut(s) 131, 273, 624
PleI GAGTC 2 cut(s) 12, 636
PpsI GAGTC 2 cut(s) 12, 636
Ppu21I YACGTR 1 cut(s) 141
PsiI TTATAA 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspPI GGNCC 2 cut(s) 302, 389
PstI CTGCAG 2 cut(s) 567, 627
RsaI GTAC 2 cut(s) 137, 143
RsaNI GTAC 2 cut(s) 136, 142
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 3 cut(s) 165, 291, 399
SatI GCNGC 3 cut(s) 130, 272, 623
Sau3AI GATC 2 cut(s) 517, 672
Sau96I GGNCC 2 cut(s) 302, 389
SchI GAGTC 2 cut(s) 13, 637
ScrFI CCNGG 1 cut(s) 572
SduI GDGCHC 3 cut(s) 63, 408, 429
SfcI CTRYAG 2 cut(s) 563, 623
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 3 cut(s) 383, 531, 602
SsiI CCGC 2 cut(s) 206, 311
SspI AATATT 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 570
TaiI ACGT 2 cut(s) 143, 480
TaqII GACCGA 1 cut(s) 366
TasI AATT 3 cut(s) 383, 531, 602
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 2 cut(s) 212, 660
Tru1I TTAA 3 cut(s) 165, 291, 399
Tru9I TTAA 3 cut(s) 165, 291, 399
TseI GCWGC 3 cut(s) 129, 271, 622
TspDTI ATGAA 5 cut(s) 225, 312, 336, 342, 653
TspGWI ACGGA 1 cut(s) 488
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 412
ZraI GACGTC 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.