Prupe.2G079900_v2.0.a1

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016382
Physical Location & Seq
Forward (+)
12206857 .. 12212576
5720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G079900.1

Sequence Viewer

Length: 1320 bp
ATGGGTTGGATGGAGAGCGTTTTGATAGAGGTGAGGCCCCTGTTTCACTTGCTGTTCCCACTGTGTGTCCACTGGATCGCTGAGGAAATGACCGTCTCGGTCCTTGTTGATGTCACTGCTGCTGCTCTTTGCCCGTCGCAGTCAACTTGTTCTCAAGCCATTTATATTAATGGCGTTCAACAAACGGTTGTTGGACTTTTCAAGATGGTGGTGCTTCCACTTCTAGGTCAACTGGCAGATGAGCGTGGGCGTAAGCCGCTGCTGCTTTTGACAGTGTCAACAACCATATTTCCTTTCGTATTACTTGCCTGGAATCAATCTAAGGAATTTGTGTATGCCTACTATGTGATTCGAACTGTTTCATATATTCTAAGTCAGGGGAGTATTTTCTGCATTGCTGTCGCTTATGTGGCAGATGTTGTCAATGAGAATAAGAGGGCTGCAGTGTTTAGTTGGATCACAGGTCTTTTTTCTGCATCACATGTCTTGGGGAATGTTCTGGCACGCTTTCTTCCCGAGAAGTACATTTTCGCTGTATCAATAGCCCTGTTGATCTTTTGTCCAGTTTATATGCAAATGTTTTTGACTGAGACAATTAATAAACGGGCACCTAAAAGTGACCAAGGTTTATCTTGCCTGACCAAGATAGTTACTATTATCCGTAAACGATATGCATCAATGAGAGATGCTGCAACAATAGTTGTTAGCAGTCCAACACTCAGAAGCATTTCTTTGGTTTCCTTCTTCTATGACTTGGGAATGTCCGGCATCAGCTCTGTGTTACTGTACTATCTGAAAGCAGCTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCTGATGATGGTGGGAATAGGTTCAATTTTCTCTCAGATATTGGTGCTTCCTTTAGCGAACCCATTGGTTGGTGAGAAGGTGATATTGAGCTCAGCCTTGTTGGCCTCAATAGCTTATGCATTGCTCTATGGCTTGGCTTGGGCTCCTTGGGTACCCTACTTAAGTGCCTCCTTTGGGGTCATCTACATTCTTGTGAAACCTTCTACTTTTGCAATTATTTCCAGAGCAACATGCTCAACCAATCAGGGAAAAGTACAAGGATTTATAGCTGGTGTGCAGTCAATATCAAGTCTGCTATCTCCAGTTGCCATGAGTCCATTGACATCATGGTTTCTATCTAGCAATGCCCCTTTCAACTGCAAAGGTTTTAGCATCATATGCGCATCCATATGCATGATGGTTGCTTTTTGCATTGCTTGCAAGCTTAAACTGGTCGAACGCTCTTCAGAGGACATTGAAACACCACTACTAACTGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

440

Amino Acids

48.09

Weight (kDa)

8.74

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1219
Acc65I GGTACC 1 cut(s) 988
AccB1I GGYRCC 2 cut(s) 607, 988
AccB7I CCANNNNNTGG 1 cut(s) 905
AciI CCGC 1 cut(s) 257
AclWI GGATC 3 cut(s) 83, 464, 829
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 1266
AdeI CACNNNGTG 1 cut(s) 65
AfaI GTAC 4 cut(s) 524, 788, 990, 1092
AfiI CCNNNNNNNGG 4 cut(s) 224, 844, 905, 1011
AflII CTTAAG 1 cut(s) 997
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 5 cut(s) 179, 202, 861, 1192, 1295
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 6 cut(s) 774, 803, 927, 950, 1106, 1261
AluI AGCT 6 cut(s) 774, 803, 927, 950, 1106, 1261
Alw21I GWGCWC 1 cut(s) 929
Alw26I GTCTC 2 cut(s) 100, 584
AlwI GGATC 3 cut(s) 83, 464, 829
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 2 cut(s) 35, 939
ApeKI GCWGC 7 cut(s) 119, 122, 259, 262, 440, 689, 800
ApoI RAATTY 1 cut(s) 326
AseI ATTAAT 2 cut(s) 168, 597
Asp700I GAANNNNTTC 3 cut(s) 358, 727, 856
Asp718I GGTACC 1 cut(s) 988
AspLEI GCGC 1 cut(s) 1220
AspS9I GGNCC 2 cut(s) 36, 100
AsuHPI GGTGA 3 cut(s) 43, 920, 928
AsuII TTCGAA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 610
BanI GGYRCC 2 cut(s) 607, 988
BanII GRGCYC 2 cut(s) 929, 982
Bbv12I GWGCWC 1 cut(s) 929
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 7 cut(s) 106, 109, 246, 249, 427, 676, 812
BccI CCATC 4 cut(s) 4, 199, 838, 1228
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 100, 584
BfaI CTAG 2 cut(s) 224, 1176
BfmI CTRYAG 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 997
BglI GCCNNNNNGGC 1 cut(s) 938
BisI GCNGC 8 cut(s) 120, 123, 257, 260, 263, 441, 690, 801
BlpI GCTNAGC 1 cut(s) 928
BlsI GCNGC 8 cut(s) 121, 124, 258, 261, 264, 442, 691, 802
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 36, 100
BmiI GGNNCC 4 cut(s) 38, 609, 981, 990
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 6 cut(s) 485, 676, 683, 777, 1218, 1229
BpmI CTGGAG 1 cut(s) 1122
Bpu10I CCTNAGC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 928
Bpu14I TTCGAA 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 673
BsaJI CCNNGG 2 cut(s) 622, 983
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 844, 905, 1011
Bse1I ACTGG 5 cut(s) 77, 237, 563, 1139, 1272
Bse3DI GCAATG 4 cut(s) 393, 956, 1186, 1248
Bse8I GATNNNNATC 1 cut(s) 673
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 622, 983
BseGI GGATG 2 cut(s) 15, 1220
BseJI GATNNNNATC 1 cut(s) 673
BseLI CCNNNNNNNGG 4 cut(s) 224, 844, 905, 1011
BseMI GCAATG 4 cut(s) 393, 956, 1186, 1248
BseMII CTCAG 6 cut(s) 72, 579, 733, 843, 884, 942
BseNI ACTGG 5 cut(s) 77, 237, 563, 1139, 1272
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 7 cut(s) 106, 109, 246, 249, 427, 676, 812
BsgI GTGCAG 1 cut(s) 1133
BshFI GGCC 2 cut(s) 37, 941
BshNI GGYRCC 2 cut(s) 607, 988
BsiHKAI GWGCWC 1 cut(s) 929
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 1 cut(s) 765
BslI CCNNNNNNNGG 4 cut(s) 224, 844, 905, 1011
BsmAI GTCTC 2 cut(s) 100, 584
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 37, 941
BsoBI CYCGRG 1 cut(s) 515
Bsp119I TTCGAA 1 cut(s) 352
Bsp1286I GDGCHC 3 cut(s) 610, 929, 982
Bsp143I GATC 4 cut(s) 75, 456, 552, 834
Bsp1720I GCTNAGC 1 cut(s) 928
BspACI CCGC 1 cut(s) 257
BspANI GGCC 2 cut(s) 37, 941
BspCNI CTCAG 6 cut(s) 73, 580, 732, 842, 883, 941
BspLI GGNNCC 4 cut(s) 38, 609, 981, 990
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 3 cut(s) 83, 464, 829
BspQI GCTCTTC 1 cut(s) 1285
BspT104I TTCGAA 1 cut(s) 352
BspT107I GGYRCC 2 cut(s) 607, 988
BspTI CTTAAG 1 cut(s) 997
BsrDI GCAATG 4 cut(s) 393, 956, 1186, 1248
BsrI ACTGG 5 cut(s) 77, 237, 563, 1139, 1272
BssECI CCNNGG 2 cut(s) 622, 983
BssMI GATC 4 cut(s) 75, 456, 552, 834
BssT1I CCWWGG 2 cut(s) 622, 983
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 6 cut(s) 63, 94, 187, 274, 358, 786
Bst6I CTCTTC 1 cut(s) 1285
BstAFI CTTAAG 1 cut(s) 997
BstAPI GCANNNNNTGC 2 cut(s) 1215, 1254
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 3 cut(s) 505, 1255, 1259
BstDEI CTNAG 8 cut(s) 81, 321, 371, 588, 719, 829, 870, 928
BstF5I GGATG 2 cut(s) 15, 1220
BstHHI GCGC 1 cut(s) 1220
BstKTI GATC 4 cut(s) 78, 459, 555, 837
BstMAI GTCTC 2 cut(s) 100, 584
BstMBI GATC 4 cut(s) 75, 456, 552, 834
BstMWI GCNNNNNNNGC 7 cut(s) 256, 262, 410, 938, 947, 1215, 1254
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 2 cut(s) 485, 1071
BstSCI CCNGG 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 610
BstV1I GCAGC 7 cut(s) 106, 109, 246, 249, 427, 676, 812
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
BsuRI GGCC 2 cut(s) 37, 941
BtsCI GGATG 2 cut(s) 15, 1220
BtsI GCAGTG 2 cut(s) 114, 450
BtsIMutI CAGTG 5 cut(s) 59, 70, 114, 279, 450
Cac8I GCNNGC 3 cut(s) 505, 1255, 1259
CfoI GCGC 1 cut(s) 1220
Cfr13I GGNCC 2 cut(s) 36, 100
Csp6I GTAC 4 cut(s) 523, 787, 989, 1091
CviAII CATG 5 cut(s) 482, 1068, 1147, 1164, 1231
CviQI GTAC 4 cut(s) 523, 787, 989, 1091
DdeI CTNAG 8 cut(s) 81, 321, 371, 588, 719, 829, 870, 928
DpnI GATC 4 cut(s) 77, 458, 554, 836
DpnII GATC 4 cut(s) 75, 456, 552, 834
DraIII CACNNNGTG 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 1285
EarI CTCTTC 1 cut(s) 1285
Ecl136II GAGCTC 1 cut(s) 927
Eco130I CCWWGG 2 cut(s) 622, 983
Eco24I GRGCYC 2 cut(s) 929, 982
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 927
Eco57I CTGAAG 1 cut(s) 1266
Eco88I CYCGRG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 927
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 308
EcoT14I CCWWGG 2 cut(s) 622, 983
EcoT22I ATGCAT 3 cut(s) 676, 958, 1232
EcoT38I GRGCYC 2 cut(s) 929, 982
ErhI CCWWGG 2 cut(s) 622, 983
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 5 cut(s) 485, 1071, 1150, 1167, 1234
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FatI CATG 5 cut(s) 481, 1067, 1146, 1163, 1230
FauNDI CATATG 2 cut(s) 1214, 1226
Fnu4HI GCNGC 8 cut(s) 120, 123, 257, 260, 263, 441, 690, 801
FokI GGATG 2 cut(s) 22, 1207
FriOI GRGCYC 2 cut(s) 929, 982
Fsp4HI GCNGC 8 cut(s) 120, 123, 257, 260, 263, 441, 690, 801
FspAI RTGCGCAY 1 cut(s) 1219
FspBI CTAG 2 cut(s) 224, 1176
FspI TGCGCA 1 cut(s) 1219
GlaI GCGC 1 cut(s) 1219
GluI GCNGC 8 cut(s) 120, 123, 257, 260, 263, 441, 690, 801
GsuI CTGGAG 1 cut(s) 1122
HaeIII GGCC 2 cut(s) 37, 941
HapII CCGG 1 cut(s) 765
HhaI GCGC 1 cut(s) 1220
Hin1II CATG 5 cut(s) 485, 1071, 1150, 1167, 1234
Hin6I GCGC 1 cut(s) 1218
HinP1I GCGC 1 cut(s) 1218
HincII GTYRAC 3 cut(s) 144, 230, 279
HindII GTYRAC 3 cut(s) 144, 230, 279
HindIII AAGCTT 1 cut(s) 1259
HinfI GANTC 3 cut(s) 313, 349, 1150
HpaII CCGG 1 cut(s) 765
HphI GGTGA 3 cut(s) 43, 920, 928
Hpy166II GTNNAC 5 cut(s) 70, 144, 230, 279, 665
Hpy188I TCNGA 5 cut(s) 722, 795, 832, 873, 1285
Hpy188III TCNNGA 4 cut(s) 202, 515, 838, 1059
Hpy8I GTNNAC 5 cut(s) 70, 144, 230, 279, 665
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 751, 907, 1047
HpyCH4III ACNGT 6 cut(s) 63, 94, 187, 274, 358, 786
HpyF10VI GCNNNNNNNGC 7 cut(s) 256, 262, 410, 938, 947, 1215, 1254
HpyF3I CTNAG 8 cut(s) 81, 321, 371, 588, 719, 829, 870, 928
Hsp92II CATG 5 cut(s) 485, 1071, 1150, 1167, 1234
HspAI GCGC 1 cut(s) 1218
KpnI GGTACC 1 cut(s) 992
Kzo9I GATC 4 cut(s) 75, 456, 552, 834
LguI GCTCTTC 1 cut(s) 1285
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 7 cut(s) 106, 109, 246, 249, 427, 676, 812
LweI GCATC 6 cut(s) 485, 676, 683, 777, 1218, 1229
MaeI CTAG 2 cut(s) 224, 1176
MaeIII GTNAC 4 cut(s) 112, 617, 649, 780
MalI GATC 4 cut(s) 77, 458, 554, 836
MboI GATC 4 cut(s) 75, 456, 552, 834
MboII GAAGA 3 cut(s) 503, 736, 1272
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 3 cut(s) 610, 929, 982
MluCI AATT 5 cut(s) 326, 594, 824, 861, 1050
MlyI GAGTC 1 cut(s) 1159
MmeI TCCRAC 3 cut(s) 172, 434, 737
MnlI CCTC 7 cut(s) 22, 27, 76, 429, 952, 1015, 1279
Mph1103I ATGCAT 3 cut(s) 676, 958, 1232
MroXI GAANNNNTTC 3 cut(s) 358, 727, 856
MseI TTAA 5 cut(s) 168, 597, 998, 1263, 1318
MslI CAYNNNNRTG 3 cut(s) 1028, 1225, 1229
MspA1I CMGCKG 1 cut(s) 259
MspCI CTTAAG 1 cut(s) 997
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 7 cut(s) 256, 262, 410, 938, 947, 1215, 1254
NdeI CATATG 2 cut(s) 1214, 1226
NdeII GATC 4 cut(s) 75, 456, 552, 834
NlaIII CATG 5 cut(s) 485, 1071, 1150, 1167, 1234
NlaIV GGNNCC 4 cut(s) 38, 609, 981, 990
NmuCI GTSAC 2 cut(s) 112, 617
NsbI TGCGCA 1 cut(s) 1219
NsiI ATGCAT 3 cut(s) 676, 958, 1232
NspI RCATGY 2 cut(s) 485, 1071
NspV TTCGAA 1 cut(s) 352
PciI ACATGT 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 1285
PdmI GAANNNNTTC 3 cut(s) 358, 727, 856
PfeI GAWTC 2 cut(s) 313, 349
PflFI GACNNNGTC 1 cut(s) 274
PflMI CCANNNNNTGG 1 cut(s) 905
PkrI GCNGC 8 cut(s) 121, 124, 258, 261, 264, 442, 691, 802
PleI GAGTC 1 cut(s) 1158
PpsI GAGTC 1 cut(s) 1158
PscI ACATGT 1 cut(s) 481
PshBI ATTAAT 2 cut(s) 168, 597
Psp124BI GAGCTC 1 cut(s) 929
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 4 cut(s) 38, 609, 981, 990
PspPI GGNCC 2 cut(s) 36, 100
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 834
PsyI GACNNNGTC 1 cut(s) 274
RsaI GTAC 4 cut(s) 524, 788, 990, 1092
RsaNI GTAC 4 cut(s) 523, 787, 989, 1091
RseI CAYNNNNRTG 3 cut(s) 1028, 1225, 1229
SacI GAGCTC 1 cut(s) 929
SapI GCTCTTC 1 cut(s) 1285
SaqAI TTAA 5 cut(s) 168, 597, 998, 1263, 1318
SatI GCNGC 8 cut(s) 120, 123, 257, 260, 263, 441, 690, 801
Sau3AI GATC 4 cut(s) 75, 456, 552, 834
Sau96I GGNCC 2 cut(s) 36, 100
SchI GAGTC 1 cut(s) 1159
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 3 cut(s) 610, 929, 982
SfaNI GCATC 6 cut(s) 485, 676, 683, 777, 1218, 1229
SfcI CTRYAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 352
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 3 cut(s) 1028, 1225, 1229
SmlI CTYRAG 2 cut(s) 153, 997
SmoI CTYRAG 2 cut(s) 153, 997
Sse9I AATT 5 cut(s) 326, 594, 824, 861, 1050
SsiI CCGC 1 cut(s) 257
SspMI CTAG 2 cut(s) 224, 1176
SstI GAGCTC 1 cut(s) 929
StyD4I CCNGG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 622, 983
TaaI ACNGT 6 cut(s) 63, 94, 187, 274, 358, 786
TaqI TCGA 2 cut(s) 352, 1272
TaqII GACCGA 1 cut(s) 88
TasI AATT 5 cut(s) 326, 594, 824, 861, 1050
TatI WGTACW 3 cut(s) 522, 786, 1090
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 2 cut(s) 313, 349
Tru1I TTAA 5 cut(s) 168, 597, 998, 1263, 1318
Tru9I TTAA 5 cut(s) 168, 597, 998, 1263, 1318
TscAI CASTG 5 cut(s) 66, 77, 121, 279, 450
TseFI GTSAC 2 cut(s) 112, 617
TseI GCWGC 7 cut(s) 119, 122, 259, 262, 440, 689, 800
Tsp45I GTSAC 2 cut(s) 112, 617
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 650
TspRI CASTG 5 cut(s) 66, 77, 121, 279, 450
Tth111I GACNNNGTC 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 905
Vha464I CTTAAG 1 cut(s) 997
VpaK11BI GGWCC 1 cut(s) 100
VspI ATTAAT 2 cut(s) 168, 597
XapI RAATTY 1 cut(s) 326
XceI RCATGY 2 cut(s) 485, 1071
XcmI CCANNNNNNNNNTGG 2 cut(s) 1161, 1231
XmnI GAANNNNTTC 3 cut(s) 358, 727, 856
XspI CTAG 2 cut(s) 224, 1176
Zsp2I ATGCAT 3 cut(s) 676, 958, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.