Rw1G010530

Hippocampus abundant transcript-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016382
Physical Location & Seq
Reverse (-)
23525502 .. 23529924
4423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010530.1

Sequence Viewer

Length: 1326 bp
ATGGCTTGGAAGACTAGTTATGGTGGTTTCAAAGAGATGAGGCCATTGTTTCACTTGCTCTTGCCTCTGTGTCTCCATTGGGTCGCTGAAGAAATGACCGTTTCTGTCCTTGTTGATGTTACTACTACTGCTCTTTGCCCCGCCCACTCCACCTGTTCTCAACCTATCTATATCACTGGTATTCAACAAACGATTGTTGGACTTTTCAAGATGGTGGTGTTACCAATTCTTGGTCAACTCGCAGATGAGAATGGCCGTAAACCAGTGCTCCTTCTTACTGTGTCAACAACCATATTCCCTTTTGCATTACTTGCCTGGAATCAGTCCAAGGGATTTGTGTATGCTTATTATGTGCTTCGTACAATTTCATATATTCTGAGTCAGGGGAGTATATTCTGCATCGCTGTTGCTTATGTGGCAGATGTTGTCAGCGAAAATAATAGGGCTGCAGCATTTAGTTGGATCACAGGTCTCTTCTCTGCATCGCATGTGTTGGGAAATGTTCTGGCCCGTTTTCTTCCCGAGAAGTACATTTTCTATGTTTCAATAGCACTCCTGATCTTTTGTCCAGTTTATATGCAAATATTTTTGGTTGAGACAACTAAAAAATTGGCCCCTCAAATGGACCAAGACTTGTCTTGCCTGACCAAGAGAGTTGCGATTATTCATAAACGTTATGTTTCAATGAGAGATGCTGCAACAATAGTTATGAGCAGTTCAACATTGAGGAGCATTTCTTTGGTTTCCTTCTTCTATGAGATGGGAATGTCTGGCATCAGCACTGTATTATTGTACTATCTGAAGGCAGCTTTTGGTTTTGACAAAAATCAATTCTCAGAGATCCTGATGATGGTGGGAATAGGCTCAATTGTCTCTCAGATGTTGGTGCTTCCATTAATCAATCCATTAGTTGGAGAGAAAGTGATACTATGCATATCCTTGTGTGCGTCAATAGCTTATGCAGTGCTCTATGGCTTGGCTTGGGCTTCTTGGGTACCATACTTAAGTGCTTCATTTGGAGTCATCTACGTCCTTGTGAAACCTTCCACTTTTGCAATTATTTCAAAAGCATCAAGCTTATCTGATCAGGGAAAGGTGCAAGGATTTATTGCTGGTGTGCAGTCCATATCAAGCCTGCTATCTCCAGTTGCCATGAGTCCATTGACATCATGGTTTCTATCTAGCAGTGCCCCTTTCGACTGCAAAGGTTTTAGCATAATATGTGCATCCATATGCATGGTGATATCCCTTTGTTATGCCTGCAAGCTTAAACCTGAATCATGCTCTACAGACGACGCTGAAGCACCACTTCTGACTGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

441

Amino Acids

48.25

Weight (kDa)

8.3

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 59 - 382 2.5e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016382)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05740
prunus_persica Prupe.2G079900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0332771
rosa_laevigata RLG00000029645
rosa_multiflora Rmu_sc0004239.1_g000022
rosa_roxburghii Rroxscaffold_4G00317990
rosa_rugosa Rorug01G0104000 Rorug01G0104100 Rorug01G0104100 Rorug01G0104200
rosa_samantha Rh1AG128100 Rh1BG097300 Rh1CG121800 Rh1DG133800
rosa_wichuraiana Rw1G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 994
AccB7I CCANNNNNTGG 2 cut(s) 230, 911
AciI CCGC 1 cut(s) 141
AclI AACGTT 1 cut(s) 673
AclWI GGATC 2 cut(s) 470, 835
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 3 cut(s) 108, 821, 1320
AfaI GTAC 4 cut(s) 361, 530, 794, 996
AfiI CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
AflII CTTAAG 1 cut(s) 1003
AgsI TTSAA 7 cut(s) 31, 185, 208, 546, 684, 720, 1065
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 4 cut(s) 809, 956, 1077, 1267
AluI AGCT 4 cut(s) 809, 956, 1077, 1267
Alw21I GWGCWC 2 cut(s) 270, 969
Alw26I GTCTC 4 cut(s) 77, 476, 590, 877
AlwI GGATC 2 cut(s) 470, 835
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 4 cut(s) 41, 253, 507, 612
ApeKI GCWGC 4 cut(s) 446, 449, 695, 806
AseI ATTAAT 1 cut(s) 896
Asp718I GGTACC 1 cut(s) 994
AspS9I GGNCC 3 cut(s) 508, 613, 625
AsuHPI GGTGA 1 cut(s) 1252
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 1192
BanI GGYRCC 1 cut(s) 994
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 270, 969
BbvI GCAGC 4 cut(s) 433, 461, 682, 818
BccI CCATC 3 cut(s) 205, 754, 844
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 1 cut(s) 1084
BcoDI GTCTC 4 cut(s) 77, 476, 590, 877
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 2 cut(s) 15, 1182
BfmI CTRYAG 2 cut(s) 447, 1287
BfrI CTTAAG 1 cut(s) 1003
BisI GCNGC 4 cut(s) 447, 450, 696, 807
BlsI GCNGC 4 cut(s) 448, 451, 697, 808
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 625
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 3 cut(s) 508, 613, 625
BmiI GGNNCC 2 cut(s) 615, 996
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 6 cut(s) 408, 491, 682, 783, 1079, 1235
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 1128
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 906, 936
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
Bse1I ACTGG 4 cut(s) 181, 263, 569, 1145
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 1226
BseLI CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
BseMII CTCAG 3 cut(s) 368, 849, 890
BseNI ACTGG 4 cut(s) 181, 263, 569, 1145
BseRI GAGGAG 1 cut(s) 742
BseSI GKGCMC 1 cut(s) 1192
BseXI GCAGC 4 cut(s) 433, 461, 682, 818
BsgI GTGCAG 1 cut(s) 1139
BshFI GGCC 4 cut(s) 43, 255, 509, 614
BshNI GGYRCC 1 cut(s) 994
BsiHKAI GWGCWC 2 cut(s) 270, 969
BsiHKCI CYCGRG 1 cut(s) 521
BslI CCNNNNNNNGG 4 cut(s) 230, 622, 850, 911
BsmAI GTCTC 4 cut(s) 77, 476, 590, 877
BsnI GGCC 4 cut(s) 43, 255, 509, 614
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 3 cut(s) 270, 969, 1192
Bsp143I GATC 4 cut(s) 462, 558, 840, 1084
BspACI CCGC 1 cut(s) 141
BspANI GGCC 4 cut(s) 43, 255, 509, 614
BspCNI CTCAG 3 cut(s) 369, 848, 889
BspLI GGNNCC 2 cut(s) 615, 996
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 2 cut(s) 470, 835
BspT107I GGYRCC 1 cut(s) 994
BspTI CTTAAG 1 cut(s) 1003
BspTNI GGTCTC 1 cut(s) 476
BsrI ACTGG 4 cut(s) 181, 263, 569, 1145
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 4 cut(s) 462, 558, 840, 1084
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 100, 280, 784
Bst6I CTCTTC 1 cut(s) 479
BstAFI CTTAAG 1 cut(s) 1003
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 1136, 1261, 1265
BstDEI CTNAG 3 cut(s) 377, 835, 876
BstF5I GGATG 1 cut(s) 1226
BstKTI GATC 4 cut(s) 465, 561, 843, 1087
BstMAI GTCTC 4 cut(s) 77, 476, 590, 877
BstMBI GATC 4 cut(s) 462, 558, 840, 1084
BstMWI GCNNNNNNNGC 3 cut(s) 311, 416, 953
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 447, 1287
BstSLI GKGCMC 1 cut(s) 1192
BstV1I GCAGC 4 cut(s) 433, 461, 682, 818
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 840
BstXI CCANNNNNNTGG 1 cut(s) 1237
BstYI RGATCY 1 cut(s) 840
BsuRI GGCC 4 cut(s) 43, 255, 509, 614
BtgZI GCGATG 2 cut(s) 385, 468
BtsCI GGATG 1 cut(s) 1226
BtsI GCAGTG 2 cut(s) 969, 1192
BtsIMutI CAGTG 5 cut(s) 174, 270, 780, 969, 1192
Cac8I GCNNGC 3 cut(s) 1136, 1261, 1265
Cfr13I GGNCC 3 cut(s) 508, 613, 625
CseI GACGC 2 cut(s) 936, 1304
Csp6I GTAC 4 cut(s) 360, 529, 793, 995
CviAII CATG 5 cut(s) 488, 1153, 1170, 1237, 1281
CviQI GTAC 4 cut(s) 360, 529, 793, 995
DdeI CTNAG 3 cut(s) 377, 835, 876
DpnI GATC 4 cut(s) 464, 560, 842, 1086
DpnII GATC 4 cut(s) 462, 558, 840, 1084
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 476
Eco32I GATATC 1 cut(s) 1245
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 3 cut(s) 108, 821, 1320
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 1245
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 2 cut(s) 935, 1238
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
FalI AAGNNNNNCTT 2 cut(s) 1293, 1325
FatI CATG 5 cut(s) 487, 1152, 1169, 1236, 1280
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 1232
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 4 cut(s) 447, 450, 696, 807
FokI GGATG 1 cut(s) 1213
Fsp4HI GCNGC 4 cut(s) 447, 450, 696, 807
FspBI CTAG 2 cut(s) 15, 1182
GluI GCNGC 4 cut(s) 447, 450, 696, 807
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 4 cut(s) 43, 255, 509, 614
HgaI GACGC 2 cut(s) 936, 1304
Hin1II CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
HincII GTYRAC 2 cut(s) 236, 285
HindII GTYRAC 2 cut(s) 236, 285
HindIII AAGCTT 2 cut(s) 1075, 1265
HinfI GANTC 5 cut(s) 319, 379, 1020, 1156, 1277
HphI GGTGA 1 cut(s) 1252
Hpy166II GTNNAC 3 cut(s) 236, 260, 285
Hpy188I TCNGA 6 cut(s) 378, 801, 838, 879, 1084, 1314
Hpy188III TCNNGA 4 cut(s) 208, 521, 556, 844
Hpy8I GTNNAC 3 cut(s) 236, 260, 285
Hpy99I CGWCG 1 cut(s) 1298
HpyAV CCTTC 4 cut(s) 281, 757, 796, 1053
HpyCH4III ACNGT 3 cut(s) 100, 280, 784
HpyCH4IV ACGT 2 cut(s) 673, 1029
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 416, 953
HpyF3I CTNAG 3 cut(s) 377, 835, 876
HpySE526I ACGT 2 cut(s) 673, 1029
Hsp92II CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
KpnI GGTACC 1 cut(s) 998
Ksp22I TGATCA 1 cut(s) 1084
Kzo9I GATC 4 cut(s) 462, 558, 840, 1084
LmnI GCTCC 2 cut(s) 273, 729
Lsp1109I GCAGC 4 cut(s) 433, 461, 682, 818
LweI GCATC 6 cut(s) 408, 491, 682, 783, 1079, 1235
MaeI CTAG 2 cut(s) 15, 1182
MaeII ACGT 2 cut(s) 673, 1029
MaeIII GTNAC 2 cut(s) 118, 219
MalI GATC 4 cut(s) 464, 560, 842, 1086
MboI GATC 4 cut(s) 462, 558, 840, 1084
MboII GAAGA 5 cut(s) 22, 101, 466, 509, 742
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 1 cut(s) 840
MhlI GDGCHC 3 cut(s) 270, 969, 1192
MluCI AATT 6 cut(s) 225, 363, 608, 830, 867, 1056
MlyI GAGTC 3 cut(s) 388, 1029, 1165
MmeI TCCRAC 3 cut(s) 178, 440, 892
MnlI CCTC 4 cut(s) 33, 75, 627, 720
Mph1103I ATGCAT 2 cut(s) 935, 1238
MseI TTAA 3 cut(s) 896, 1004, 1269
MslI CAYNNNNRTG 2 cut(s) 1231, 1235
MspCI CTTAAG 1 cut(s) 1003
MspR9I CCNGG 1 cut(s) 316
MunI CAATTG 1 cut(s) 867
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 311, 416, 953
NdeI CATATG 1 cut(s) 1232
NdeII GATC 4 cut(s) 462, 558, 840, 1084
NlaIII CATG 5 cut(s) 491, 1156, 1173, 1240, 1284
NlaIV GGNNCC 2 cut(s) 615, 996
NsiI ATGCAT 2 cut(s) 935, 1238
NspI RCATGY 1 cut(s) 491
PfeI GAWTC 2 cut(s) 319, 1277
PflMI CCANNNNNTGG 2 cut(s) 230, 911
PkrI GCNGC 4 cut(s) 448, 451, 697, 808
PleI GAGTC 3 cut(s) 387, 1028, 1164
PpsI GAGTC 3 cut(s) 387, 1028, 1164
PshBI ATTAAT 1 cut(s) 896
Psp1406I AACGTT 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 615, 996
PspPI GGNCC 3 cut(s) 508, 613, 625
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 840
RsaI GTAC 4 cut(s) 361, 530, 794, 996
RsaNI GTAC 4 cut(s) 360, 529, 793, 995
RseI CAYNNNNRTG 2 cut(s) 1231, 1235
SaqAI TTAA 3 cut(s) 896, 1004, 1269
SatI GCNGC 4 cut(s) 447, 450, 696, 807
Sau3AI GATC 4 cut(s) 462, 558, 840, 1084
Sau96I GGNCC 3 cut(s) 508, 613, 625
SchI GAGTC 3 cut(s) 388, 1029, 1165
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 3 cut(s) 270, 969, 1192
SfaNI GCATC 6 cut(s) 408, 491, 682, 783, 1079, 1235
SfcI CTRYAG 2 cut(s) 447, 1287
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 2 cut(s) 1231, 1235
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 6 cut(s) 225, 363, 608, 830, 867, 1056
SsiI CCGC 1 cut(s) 141
SspI AATATT 1 cut(s) 585
SspMI CTAG 2 cut(s) 15, 1182
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 3 cut(s) 100, 280, 784
TaiI ACGT 2 cut(s) 676, 1032
TaqI TCGA 1 cut(s) 1197
TasI AATT 6 cut(s) 225, 363, 608, 830, 867, 1056
TatI WGTACW 2 cut(s) 528, 792
TfiI GAWTC 2 cut(s) 319, 1277
Tru1I TTAA 3 cut(s) 896, 1004, 1269
Tru9I TTAA 3 cut(s) 896, 1004, 1269
TscAI CASTG 5 cut(s) 181, 270, 787, 969, 1192
TseI GCWGC 4 cut(s) 446, 449, 695, 806
TspDTI ATGAA 3 cut(s) 357, 656, 1002
TspRI CASTG 5 cut(s) 181, 270, 787, 969, 1192
Van91I CCANNNNNTGG 2 cut(s) 230, 911
Vha464I CTTAAG 1 cut(s) 1003
VpaK11BI GGWCC 1 cut(s) 625
VspI ATTAAT 1 cut(s) 896
XceI RCATGY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 1167
XspI CTAG 2 cut(s) 15, 1182
Zsp2I ATGCAT 2 cut(s) 935, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.