FvH4_7g05820

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015908
Physical Location & Seq
Forward (+)
6052784 .. 6054417
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05820.t1

Sequence Viewer

Length: 264 bp
ATGGCCTCTCAGACTACAGTCCTCAAGGTTGGTATGTCGTGCCAAGGCTGTGTTGGTGCTGTCAAAAGGGTACTTGGCAAGCTCGAAGGTGTGGAATCATATGACATTGATTTTGATGCACAAAAGGTGACAGTCAAAGGCAACGTGCCAGCCGAGACAGTTCTTCAAACTGTTTCCAAAACTGGCAAAAAGACTGCCTACTGGGAGGCAGAAGCACCAGCAGAACCTGAAGCAAAGCCTGCAGAAGCTGTGGCTGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

88

Amino Acids

9.06

Weight (kDa)

5.36

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 8 - 64 4.9e-19 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240
fragaria_vesca FvH4_7g05820 FvH4_7g05820
malus_domestica MD02G1255400.v1.1 MD07G1066200.v1.1
prunus_persica Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.2G083400_v2.0.a1
pyrus_communis pycom02g21620
rosa_multiflora Rmu_co8296235.1_g000001
rosa_roxburghii Rroxscaffold_4G00317880
rosa_rugosa Rorug01G0102100 Rorug01G0102300
rosa_samantha Rh1DG134500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 72
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 82, 248
AluI AGCT 2 cut(s) 82, 248
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 2 cut(s) 227, 248
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 254, 257
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AsuHPI GGTGA 1 cut(s) 139
BbvI GCAGC 2 cut(s) 241, 244
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 2 cut(s) 15, 240
BisI GCNGC 2 cut(s) 255, 258
BlsI GCNGC 2 cut(s) 256, 259
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 211
BoxI GACNNNNGTC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 187, 206
BseDI CCNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 187, 206
BseXI GCAGC 2 cut(s) 241, 244
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 22
BspMAI CTGCAG 1 cut(s) 244
BsrI ACTGG 2 cut(s) 187, 206
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 19, 133, 160, 172
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 80, 150, 240
BstDEI CTNAG 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 239, 254
BstPAI GACNNNNGTC 1 cut(s) 17
BstSFI CTRYAG 2 cut(s) 15, 240
BstV1I GCAGC 2 cut(s) 241, 244
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 3 cut(s) 80, 150, 240
CaiI CAGNNNCTG 2 cut(s) 227, 248
Csp6I GTAC 1 cut(s) 71
CviJI RGCY 7 cut(s) 5, 48, 82, 152, 238, 248, 254
CviKI_1 RGCY 7 cut(s) 5, 48, 82, 152, 238, 248, 254
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaiI YATR 4 cut(s) 35, 100, 102, 262
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 255, 258
Fsp4HI GCNGC 2 cut(s) 255, 258
GluI GCNGC 2 cut(s) 255, 258
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 4 cut(s) 19, 133, 160, 172
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 119, 242, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 254
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 144
LpnPI CCDG 6 cut(s) 162, 168, 187, 231, 240, 252
Lsp1109I GCAGC 2 cut(s) 241, 244
LweI GCATC 1 cut(s) 106
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 1 cut(s) 155
MnlI CCTC 3 cut(s) 16, 32, 199
MwoI GCNNNNNNNGC 2 cut(s) 239, 254
NdeI CATATG 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 256, 259
PshAI GACNNNNGTC 1 cut(s) 17
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 2 cut(s) 227, 248
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SatI GCNGC 2 cut(s) 255, 258
SetI ASST 7 cut(s) 30, 84, 91, 129, 147, 229, 250
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 15, 240
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 19, 133, 160, 172
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 84
TfiI GAWTC 1 cut(s) 95
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 254, 257
Tsp45I GTSAC 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.