MD02G1255400.v1.1

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015908
Physical Location & Seq
Reverse (-)
30731688 .. 30733624
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1255400.v1.1.491

Sequence Viewer

Length: 273 bp
ATGGCGTCTCAGACTACTACGGTCCTCAAGGTTGGTATGTCGTGTCAAGGCTGTGTTGGGGCCGTCAAACGGGTTCTTGGCAAACTTGAAGGTGTAGAATCATATGACATTGATTTCGACGCTCAGAAGGTGACAGTGAAAAGCAATTTACCACCCGAGACAGTGCTGCAAACTGTTTCCAAAACTGGCAAGAAAACTGCTTATTGGGAAGCAGAAGCACCGGCACCAGCAGAACCGGAAGCAAAGCCTGCAGAAACTGTGGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

91

Amino Acids

9.42

Weight (kDa)

5.36

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 9 - 65 1.4e-18 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240
fragaria_vesca FvH4_7g05820 FvH4_7g05820
malus_domestica MD02G1255400.v1.1 MD07G1066200.v1.1
prunus_persica Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.2G083400_v2.0.a1
pyrus_communis pycom02g21620
rosa_multiflora Rmu_co8296235.1_g000001
rosa_roxburghii Rroxscaffold_4G00317880
rosa_rugosa Rorug01G0102100 Rorug01G0102300
rosa_samantha Rh1DG134500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 12, 152
AlwNI CAGNNNCTG 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 166, 263, 266
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspS9I GGNCC 2 cut(s) 22, 60
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 223
BbvI GCAGC 3 cut(s) 153, 250, 253
BceAI ACGGC 1 cut(s) 47
BcoDI GTCTC 2 cut(s) 12, 152
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 3 cut(s) 167, 264, 267
BlsI GCNGC 3 cut(s) 168, 265, 268
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 22, 60
BmiI GGNNCC 2 cut(s) 61, 225
BpuEI CTTGAG 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 23, 137
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 3 cut(s) 153, 250, 253
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 221, 236
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 2 cut(s) 12, 152
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 155
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 22, 136
BspLI GGNNCC 2 cut(s) 61, 225
BspMAI CTGCAG 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 5 cut(s) 22, 136, 163, 175, 259
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 9, 123, 270
BstMAI GTCTC 2 cut(s) 12, 152
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 153, 250, 253
BsuRI GGCC 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 141, 168
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 22, 60
CseI GACGC 1 cut(s) 128
CviJI RGCY 4 cut(s) 51, 62, 247, 263
CviKI_1 RGCY 4 cut(s) 51, 62, 247, 263
DdeI CTNAG 3 cut(s) 9, 123, 270
Eco47I GGWCC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 3 cut(s) 38, 103, 105
FauNDI CATATG 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 167, 264, 267
Fsp4HI GCNGC 3 cut(s) 167, 264, 267
GluI GCNGC 3 cut(s) 167, 264, 267
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 221, 236
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 1 cut(s) 98
HpaII CCGG 2 cut(s) 221, 236
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 12, 126
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 83, 121
HpyCH4III ACNGT 5 cut(s) 22, 136, 163, 175, 259
HpyCH4V TGCA 2 cut(s) 169, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 3 cut(s) 9, 123, 270
Hsp92I GRCGYC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 171, 234, 240, 249, 261
Lsp1109I GCAGC 3 cut(s) 153, 250, 253
MaeIII GTNAC 1 cut(s) 130
MluCI AATT 1 cut(s) 145
MnlI CCTC 1 cut(s) 35
MspI CCGG 2 cut(s) 221, 236
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeI CATATG 1 cut(s) 103
NlaIV GGNNCC 2 cut(s) 61, 225
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 168, 265, 268
PspN4I GGNNCC 2 cut(s) 61, 225
PspPI GGNCC 2 cut(s) 22, 60
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 257
SatI GCNGC 3 cut(s) 167, 264, 267
Sau96I GGNCC 2 cut(s) 22, 60
SetI ASST 3 cut(s) 33, 94, 132
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 145
TaaI ACNGT 5 cut(s) 22, 136, 163, 175, 259
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 145
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 2 cut(s) 141, 168
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 3 cut(s) 166, 263, 266
Tsp45I GTSAC 1 cut(s) 130
TspRI CASTG 2 cut(s) 141, 168
VpaK11BI GGWCC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.