MD07G1066200.v1.1

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015908
Physical Location & Seq
Forward (+)
6270238 .. 6272126
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1066200.v1.1.491

Sequence Viewer

Length: 264 bp
ATGGCGTCTCAGACTACGGTCCTCAAGGTTGGTATGTCGTGTCAAGGCTGTGTTGGGGCCGTCAAACGGGTTCTTGGCAAACTTGAAGGTGTAGAATCATATGACATTGATTTCGATGCTCAGAAAGTGACAGTGAAAAGCAATTTACCACCCGAGACAGTGCTGCAAACTGTTTCCAAAACTGGCAAGAAGACTGCTTATTGGGAAGCAGAAGCACCAGCAGAACCGGAAGCTAAGCCTGCAGAAGCTGTGGCAGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

88

Amino Acids

9.13

Weight (kDa)

5.36

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 8 - 64 1.2e-18 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240
fragaria_vesca FvH4_7g05820 FvH4_7g05820
malus_domestica MD02G1255400.v1.1 MD07G1066200.v1.1
prunus_persica Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.2G083400_v2.0.a1
pyrus_communis pycom02g21620
rosa_multiflora Rmu_co8296235.1_g000001
rosa_roxburghii Rroxscaffold_4G00317880
rosa_rugosa Rorug01G0102100 Rorug01G0102300
rosa_samantha Rh1DG134500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 3 cut(s) 233, 248, 257
AluI AGCT 3 cut(s) 233, 248, 257
Alw26I GTCTC 2 cut(s) 12, 149
AlwNI CAGNNNCTG 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 163, 254, 257
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 2 cut(s) 19, 57
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 150, 244
BceAI ACGGC 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 12, 149
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 3 cut(s) 164, 255, 258
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 3 cut(s) 165, 256, 259
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 19, 57
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 1 cut(s) 106
BoxI GACNNNNGTC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 23, 134
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 150, 244
BshFI GGCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 2 cut(s) 12, 149
BsmBI CGTCTC 1 cut(s) 12
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 152
Bsp1720I GCTNAGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 22, 133
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 244
BsrI ACTGG 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 4 cut(s) 19, 133, 160, 172
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 4 cut(s) 9, 120, 234, 261
BstMAI GTCTC 2 cut(s) 12, 149
BstMWI GCNNNNNNNGC 2 cut(s) 239, 254
BstPAI GACNNNNGTC 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 150, 244
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 138, 165
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 19, 57
CviJI RGCY 6 cut(s) 48, 59, 233, 238, 248, 257
CviKI_1 RGCY 6 cut(s) 48, 59, 233, 238, 248, 257
DdeI CTNAG 4 cut(s) 9, 120, 234, 261
Eco47I GGWCC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 12
FaiI YATR 3 cut(s) 35, 100, 102
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 164, 255, 258
Fsp4HI GCNGC 3 cut(s) 164, 255, 258
GluI GCNGC 3 cut(s) 164, 255, 258
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 5
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 12, 123
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 4 cut(s) 19, 133, 160, 172
HpyCH4V TGCA 2 cut(s) 166, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 254
HpyF3I CTNAG 4 cut(s) 9, 120, 234, 261
Hsp92I GRCGYC 1 cut(s) 5
LpnPI CCDG 4 cut(s) 168, 231, 240, 252
Lsp1109I GCAGC 2 cut(s) 150, 244
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 1 cut(s) 202
MluCI AATT 1 cut(s) 142
MnlI CCTC 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 239, 254
NdeI CATATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 3 cut(s) 165, 256, 259
PshAI GACNNNNGTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 19, 57
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 257
SatI GCNGC 3 cut(s) 164, 255, 258
Sau96I GGNCC 2 cut(s) 19, 57
SetI ASST 5 cut(s) 30, 91, 235, 250, 259
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 142
TaaI ACNGT 4 cut(s) 19, 133, 160, 172
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 142
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 2 cut(s) 138, 165
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 163, 254, 257
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 2 cut(s) 138, 165
VpaK11BI GGWCC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.