Rh1DG134500

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015908
Physical Location & Seq
Forward (+)
28185135 .. 28187759
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG134500.1

Sequence Viewer

Length: 231 bp
ATGTCATGCCAAGGCTGTGTTGGAGCTGTGAAAAGGGTTCTTGGCAAACTGGAAGGTGTGGAATCATATGACATTGATTTTGATGCACAAAAGGTGACAGTGAAAGGCAATGTGCCACCCGAGACAGTTCTGCAAACTGTTACCAAAACTGGCAAGAAGACTGCCTACTGGGAGGCAGAAGCACCAGCAGAACCCGAAGCAAAGCCTGCAGAAGCTGTGGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

76

Amino Acids

7.98

Weight (kDa)

5.02

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 1 - 53 2.3e-17 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240
fragaria_vesca FvH4_7g05820 FvH4_7g05820
malus_domestica MD02G1255400.v1.1 MD07G1066200.v1.1
prunus_persica Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.2G083400_v2.0.a1
pyrus_communis pycom02g21620
rosa_multiflora Rmu_co8296235.1_g000001
rosa_roxburghii Rroxscaffold_4G00317880
rosa_rugosa Rorug01G0102100 Rorug01G0102300
rosa_samantha Rh1DG134500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 26, 215
AluI AGCT 2 cut(s) 26, 215
Alw26I GTCTC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 221, 224
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 119
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 208, 211
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 2 cut(s) 222, 225
BlsI GCNGC 2 cut(s) 223, 226
BmeT110I CYCGRG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 3 cut(s) 54, 154, 173
Bse3DI GCAATG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 115
BseNI ACTGG 3 cut(s) 54, 154, 173
BseXI GCAGC 2 cut(s) 208, 211
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 3 cut(s) 54, 154, 173
BssECI CCNNGG 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 3 cut(s) 100, 127, 139
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 206, 221
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 208, 211
BstV2I GAAGAC 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 207
CaiI CAGNNNCTG 1 cut(s) 215
CviAII CATG 1 cut(s) 6
CviJI RGCY 5 cut(s) 15, 26, 205, 215, 221
CviKI_1 RGCY 5 cut(s) 15, 26, 205, 215, 221
Eco130I CCWWGG 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 9
FaiI YATR 4 cut(s) 7, 67, 69, 229
FatI CATG 1 cut(s) 5
FauNDI CATATG 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 222, 225
Fsp4HI GCNGC 2 cut(s) 222, 225
GluI GCNGC 2 cut(s) 222, 225
Hin1II CATG 1 cut(s) 9
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 3 cut(s) 100, 127, 139
HpyCH4V TGCA 4 cut(s) 86, 133, 209, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 221
Hsp92II CATG 1 cut(s) 9
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 5 cut(s) 35, 135, 154, 198, 219
Lsp1109I GCAGC 2 cut(s) 208, 211
LweI GCATC 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 94, 139
MboII GAAGA 1 cut(s) 169
MnlI CCTC 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 206, 221
NdeI CATATG 1 cut(s) 67
NlaIII CATG 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 223, 226
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 215
SatI GCNGC 2 cut(s) 222, 225
SetI ASST 4 cut(s) 28, 58, 96, 217
SfaNI GCATC 1 cut(s) 73
SfcI CTRYAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 100, 127, 139
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 221, 224
Tsp45I GTSAC 1 cut(s) 94
TspRI CASTG 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.