Rorug01G0102300

Copper transport protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
16970542 .. 16972460
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0102300.1

Sequence Viewer

Length: 489 bp
ATGGCAGGCTCTAAAAATGCGTCAAAGAAGAAGCAAAAGCGCGGTATCGACTTCAAGAAAATAAAGCGAAAGATTGGCAGAAAATTGCCACCGGCACAGAATGCTACAAATACTGAAATTAAATCTAAAGCAATTGTTCTCCCCGAGCAGAGTGTGGCATCAGAGAAGGCAGGATTAGCAGTGAATAAGAAAGGCTTGACTTTGAAAGAGCTTCTTCAACAAACATCTCATTACAGCTCAAAAGTCCGTAAAGACTCATTGTTGGGAATTAAGGATTTATTCCTTAAGCATCCAGAAGAGTTGAGGTTGCATATGTACGCTGTTATTGAAAAACTGCGTGAACGCATTGGTGATGATGATAGACTAGTTCGAGAAACGCTGTATCAACTTTTCAAGTCAGTGATTTTCCCTAGATTTAAGGAGGATAATCAAGAGCTTTTTGTTTCCTTGATGATGGCCTATAGAGAGCTGTGGAAGAAGAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.84

Weight (kDa)

10.17

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015908)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 42
AciI CCGC 1 cut(s) 42
AfaI GTAC 1 cut(s) 317
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 5 cut(s) 55, 205, 218, 329, 394
AhlI ACTAGT 1 cut(s) 364
AluBI AGCT 4 cut(s) 211, 237, 436, 469
AluI AGCT 4 cut(s) 211, 237, 436, 469
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 143
BccI CCATC 1 cut(s) 448
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 2 cut(s) 365, 411
BfmI CTRYAG 1 cut(s) 460
BfrI CTTAAG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 143
BmsI GCATC 2 cut(s) 167, 298
Bse118I RCCGGY 1 cut(s) 91
BseGI GGATG 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 458
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 92
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 143
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 458
BspFNI CGCG 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 291, 476
BstAFI CTTAAG 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 101, 176
BstSFI CTRYAG 1 cut(s) 460
BstUI CGCG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 186, 405
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 91
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 316
CviJI RGCY 7 cut(s) 9, 195, 211, 237, 436, 458, 469
CviKI_1 RGCY 7 cut(s) 9, 195, 211, 237, 436, 458, 469
CviQI GTAC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 291, 476
EarI CTCTTC 2 cut(s) 291, 476
Eco88I CYCGRG 1 cut(s) 143
FaiI YATR 3 cut(s) 312, 314, 462
FalI AAGNNNNNCTT 4 cut(s) 179, 211, 198, 230
FauNDI CATATG 1 cut(s) 312
FokI GGATG 1 cut(s) 276
FspBI CTAG 2 cut(s) 365, 411
GlaI GCGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 55, 293, 371, 431
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 176
HspAI GCGC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 105, 156, 306
LweI GCATC 2 cut(s) 167, 298
MaeI CTAG 2 cut(s) 365, 411
MboII GAAGA 4 cut(s) 40, 206, 308, 487
MfeI CAATTG 1 cut(s) 132
MluCI AATT 4 cut(s) 83, 117, 132, 267
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 297, 415
MseI TTAA 4 cut(s) 120, 270, 285, 417
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 106
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 101, 176
NdeI CATATG 1 cut(s) 312
PctI GAATGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 4 cut(s) 120, 270, 285, 417
SchI GAGTC 1 cut(s) 248
SetI ASST 5 cut(s) 213, 239, 308, 438, 471
SfaNI GCATC 2 cut(s) 167, 298
SfcI CTRYAG 1 cut(s) 460
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 364
Sse9I AATT 4 cut(s) 83, 117, 132, 267
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 365, 411
TaqI TCGA 2 cut(s) 48, 370
TasI AATT 4 cut(s) 83, 117, 132, 267
Tru1I TTAA 4 cut(s) 120, 270, 285, 417
Tru9I TTAA 4 cut(s) 120, 270, 285, 417
TscAI CASTG 2 cut(s) 186, 405
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 186, 405
Vha464I CTTAAG 1 cut(s) 284
XspI CTAG 2 cut(s) 365, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.