Rroxscaffold_4G00317880

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015908
Physical Location & Seq
Reverse (-)
43442014 .. 43444117
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317880.1

Sequence Viewer

Length: 297 bp
ATGGCATCTCAGACTACAGTCCTCAAGGTTGGTATGTCATGCCAAGGCTGTGTTGGAGCTGTGAAAAGGGTTCTTGGCAAACTGGAAGGTGTGGAATCATATGACATTGATTTTGATGCACAAAAGGTGACAGTGAAAGGCAATGTGCCACCCGAGACAGTTCTGCAAACTGTTACCAAAACTGGCAAGAAGACTGCCTACTGGGAGGCAGAAGCACCAGCCGAAGCCGAAGCAAAGCCTGCAGACGCACCAGCAGAACCCGAAGCAAAGCCTGCAGAAGCTGTGGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

98

Amino Acids

10.15

Weight (kDa)

4.93

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 8 - 64 5.3e-19 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240
fragaria_vesca FvH4_7g05820 FvH4_7g05820
malus_domestica MD02G1255400.v1.1 MD07G1066200.v1.1
prunus_persica Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.2G083400_v2.0.a1
pyrus_communis pycom02g21620
rosa_multiflora Rmu_co8296235.1_g000001
rosa_roxburghii Rroxscaffold_4G00317880
rosa_rugosa Rorug01G0102100 Rorug01G0102300
rosa_samantha Rh1DG134500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 59, 281
AluI AGCT 2 cut(s) 59, 281
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 287, 290
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 274, 277
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 3 cut(s) 15, 240, 273
BisI GCNGC 2 cut(s) 288, 291
BlsI GCNGC 2 cut(s) 289, 292
BmeT110I CYCGRG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 14, 106
BmuI ACTGGG 1 cut(s) 211
BoxI GACNNNNGTC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 43
Bse1I ACTGG 3 cut(s) 87, 187, 206
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 3 cut(s) 87, 187, 206
BseXI GCAGC 2 cut(s) 274, 277
BsiHKCI CYCGRG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 22
BspMAI CTGCAG 2 cut(s) 244, 277
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 3 cut(s) 87, 187, 206
BssECI CCNNGG 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 19, 133, 160, 172
BstAPI GCANNNNNTGC 2 cut(s) 239, 272
BstC8I GCNNGC 2 cut(s) 240, 273
BstDEI CTNAG 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 239, 272, 287
BstPAI GACNNNNGTC 1 cut(s) 17
BstSFI CTRYAG 3 cut(s) 15, 240, 273
BstV1I GCAGC 2 cut(s) 274, 277
BstV2I GAAGAC 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 240, 273
CaiI CAGNNNCTG 1 cut(s) 281
CseI GACGC 1 cut(s) 254
CviAII CATG 1 cut(s) 39
CviJI RGCY 8 cut(s) 48, 59, 221, 227, 238, 271, 281, 287
CviKI_1 RGCY 8 cut(s) 48, 59, 221, 227, 238, 271, 281, 287
DdeI CTNAG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 42
FaiI YATR 5 cut(s) 35, 40, 100, 102, 295
FatI CATG 1 cut(s) 38
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 288, 291
Fsp4HI GCNGC 2 cut(s) 288, 291
GluI GCNGC 2 cut(s) 288, 291
HgaI GACGC 1 cut(s) 254
Hin1II CATG 1 cut(s) 42
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 4 cut(s) 19, 133, 160, 172
HpyCH4V TGCA 5 cut(s) 119, 166, 242, 275, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 272, 287
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 42
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 7 cut(s) 68, 168, 187, 231, 252, 264, 285
Lsp1109I GCAGC 2 cut(s) 274, 277
LweI GCATC 2 cut(s) 14, 106
MaeIII GTNAC 2 cut(s) 127, 172
MboII GAAGA 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 2 cut(s) 32, 199
MwoI GCNNNNNNNGC 3 cut(s) 239, 272, 287
NdeI CATATG 1 cut(s) 100
NlaIII CATG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 289, 292
PshAI GACNNNNGTC 1 cut(s) 17
PstI CTGCAG 2 cut(s) 244, 277
PstNI CAGNNNCTG 1 cut(s) 281
SatI GCNGC 2 cut(s) 288, 291
SetI ASST 5 cut(s) 30, 61, 91, 129, 283
SfaNI GCATC 2 cut(s) 14, 106
SfcI CTRYAG 3 cut(s) 15, 240, 273
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 19, 133, 160, 172
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 287, 290
Tsp45I GTSAC 1 cut(s) 127
TspRI CASTG 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.