FvH4_7g06190

GDSL esterase lipase At1g71250-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014790
Physical Location & Seq
Reverse (-)
6327330 .. 6328046
717 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06190.t1

Sequence Viewer

Length: 435 bp
ATGAATCACGGCAACCAGAGTCATCAGTCTGTGAACCACCGGCAAGTTTTTGATTCTCTGCAACTCTTACAACTGCAGCTTAGCGAGGACAGAGCTCTCAGTTTCATCAAATCTTGCATCTTCTACCTCTCCTTTGGCAAAGATGACTTCATAGAACTCCTCCTACAAAATGCCTCGGGTACTGCAAAACAGAACAGTACTGATCAAGAATTTGCACACATTTTAGCAGATCAAATGATACATGTTATACGGAACCTTTATGCCATGAATGTGGGGAGGATCATATGCATGGGAATATTACCCTTGGGATGCACTCCGAGGGTGTTATTGAACCAATACAATTCCACAGCCAAACCACATGATGACGATGATGATGTTGCAAAGGGATGTGTAGAGGAGATCAATGCGCATGTCTTGGAGTACAACAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

145

Amino Acids

16.32

Weight (kDa)

5.38

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014790)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06121 FvH4_7g06190
malus_domestica MD00G1178200.v1.1
prunus_persica Prupe.6G152900_v2.0.a1
pyrus_communis pycom11g15560
rosa_chinensis RchiOBHm_Chr1g0333821
rosa_laevigata RLG00000029528
rosa_multiflora Rmu_sc0000026.1_g000017 Rmu_sc0007177.1_g000005
rosa_roxburghii Rroxscaffold_4G00317200
rosa_rugosa Rorug01G0112100
rosa_samantha Rh1AG134500 Rh1AG134600 Rh1BG102800 Rh1CG127900 Rh1DG140000
rosa_wichuraiana Rw1G011220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 408
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 3 cut(s) 181, 199, 422
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 2 cut(s) 79, 95
AluI AGCT 2 cut(s) 79, 95
Alw21I GWGCWC 1 cut(s) 97
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 175
BanII GRGCYC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 25
BclI TGATCA 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 77
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 254
BmsI GCATC 2 cut(s) 126, 299
Bpu1102I GCTNAGC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 174, 303, 317
Bse118I RCCGGY 1 cut(s) 39
BseDI CCNNGG 3 cut(s) 174, 303, 317
BseGI GGATG 2 cut(s) 314, 392
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 149, 410
BseXI GCAGC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 4 cut(s) 202, 229, 279, 399
Bsp1720I GCTNAGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 254
BspMAI CTGCAG 1 cut(s) 78
BspPI GGATC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 174, 303, 317
BssMI GATC 4 cut(s) 202, 229, 279, 399
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 80, 98
BstF5I GGATG 2 cut(s) 314, 392
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 4 cut(s) 205, 232, 282, 402
BstMBI GATC 4 cut(s) 202, 229, 279, 399
BstNSI RCATGY 2 cut(s) 245, 413
BstSFI CTRYAG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 271
BtsCI GGATG 2 cut(s) 314, 392
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 39
Csp6I GTAC 3 cut(s) 180, 198, 421
CviAII CATG 5 cut(s) 242, 265, 289, 359, 410
CviJI RGCY 3 cut(s) 79, 95, 350
CviKI_1 RGCY 3 cut(s) 79, 95, 350
CviQI GTAC 3 cut(s) 180, 198, 421
DdeI CTNAG 2 cut(s) 80, 98
DpnI GATC 4 cut(s) 204, 231, 281, 401
DpnII GATC 4 cut(s) 202, 229, 279, 399
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 5 cut(s) 245, 268, 292, 362, 413
FatI CATG 5 cut(s) 241, 264, 288, 358, 409
FauNDI CATATG 1 cut(s) 284
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 2 cut(s) 321, 399
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 77
FspAI RTGCGCAY 1 cut(s) 408
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 1 cut(s) 408
GluI GCNGC 1 cut(s) 77
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 409
Hin1II CATG 5 cut(s) 245, 268, 292, 362, 413
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 3 cut(s) 4, 19, 53
HpaII CCGG 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 8 cut(s) 61, 76, 117, 185, 215, 288, 312, 380
HpyF3I CTNAG 2 cut(s) 80, 98
Hsp92II CATG 5 cut(s) 245, 268, 292, 362, 413
HspAI GCGC 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 202, 229, 279, 399
LpnPI CCDG 2 cut(s) 29, 53
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 2 cut(s) 126, 299
MalI GATC 4 cut(s) 204, 231, 281, 401
MboI GATC 4 cut(s) 202, 229, 279, 399
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 209, 340
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 7 cut(s) 79, 137, 170, 184, 270, 312, 388
Mph1103I ATGCAT 1 cut(s) 290
MslI CAYNNNNRTG 2 cut(s) 269, 287
MspI CCGG 1 cut(s) 40
NdeI CATATG 1 cut(s) 284
NdeII GATC 4 cut(s) 202, 229, 279, 399
NlaIII CATG 5 cut(s) 245, 268, 292, 362, 413
NlaIV GGNNCC 1 cut(s) 254
NsbI TGCGCA 1 cut(s) 408
NsiI ATGCAT 1 cut(s) 290
NspI RCATGY 2 cut(s) 245, 413
PciI ACATGT 1 cut(s) 241
PfeI GAWTC 2 cut(s) 4, 53
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PscI ACATGT 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 254
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PstI CTGCAG 1 cut(s) 78
RsaI GTAC 3 cut(s) 181, 199, 422
RsaNI GTAC 3 cut(s) 180, 198, 421
RseI CAYNNNNRTG 2 cut(s) 269, 287
SacI GAGCTC 1 cut(s) 97
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 4 cut(s) 202, 229, 279, 399
ScaI AGTACT 1 cut(s) 199
SchI GAGTC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 97
SetI ASST 4 cut(s) 81, 97, 129, 258
SfaNI GCATC 2 cut(s) 126, 299
SfcI CTRYAG 1 cut(s) 74
SmiMI CAYNNNNRTG 2 cut(s) 269, 287
Sse9I AATT 2 cut(s) 209, 340
SspI AATATT 1 cut(s) 297
SstI GAGCTC 1 cut(s) 97
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 197
TasI AATT 2 cut(s) 209, 340
TatI WGTACW 2 cut(s) 197, 420
TfiI GAWTC 2 cut(s) 4, 53
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 4 cut(s) 17, 94, 139, 281
TspGWI ACGGA 1 cut(s) 265
XapI RAATTY 1 cut(s) 209
XceI RCATGY 2 cut(s) 245, 413
ZrmI AGTACT 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.