Prupe.6G152900_v2.0.a1

GDSL esterase lipase At1g71250-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014790
Physical Location & Seq
Forward (+)
13285842 .. 13288373
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G152900.1

Sequence Viewer

Length: 1161 bp
ATGACAATGTCCCAAGAAAAACTCAATTTCAAAGCAAGCAAGTTGTTGCTTCTTGTTCATCTTCTAGCCCTTTTGGTCATAGCTCATGGGAAATTGCCGCCAGAGGTTTCAAATGACCTAAATGCCCCTGCTGTCTACATCTTGGGAGATTCCTCTGTTGATTGTGGAGACAACACACTGTTTTACCCTCTCATTCACAGCTCCATGTCCTTGTATTCATGCAACGGTTCTGATTCCACTCTGATTCCCCATCTTCTTGCTGAGAAGATGGGCATGCCAAATATCCTACCTTTCTACAGTCAAAATGGATCCATTGATGGAATACTAAAAGGCCTCAACTTTGGTTCAGCACAAGCAACAATCATGAACCCGAGCAGCCAGAGCTACCAGTCTGTAAACCAGCAACTACGCCAAGTTTTCGACTCAATGCAGCTCTTACAACTGCAGCTGAGCCAGGAAACAGCTCTCCATTTCATCCGATCTTCCATCTTCTACCTCTCCTTTGGCAAAGACGACTACATCGACCTCTACCAGCGCAAAGCATCAGGCGCTGCAAAACCCAACTACAGTGACCAAGAATTCTCCCACGTTTTAGCAAATCAGATGATACATGTTATAAGGAACCTCTATGACATGAATGTGAGGAGGATGATCTGCATGGGGATATTGCCTCTGGGATGCACACCGCGTATGTTGCTGGACCGGTACAATTCGAATTCCAAAGGCAGTGAGGAAGATGACGATGGAAGGGGTTGTGTGGAGGAGATCAATGCGCAGGTTTCGGAGTACAACAAAATGCTGCACGAGCAGATTGCTATGCTCCGCACAGAGCTTCCGGATGCCCAGATTGTGTTCTGTGATGTGTACCAAGGAATTAGAAAGATCATAAACAACCCAGAACACTACGGATTTGAGGATGTAAAGAATGCCTGCTGTGGCTTGGGAATGTATGGGGCAGCAATTGGATGCCTTTCAAAAGATACGGCATGCGAACAAGATACAAGCCATGTGTGGTGGGATTTGTACAACCCAACAAAGGCAGTCAACTCCTTGCTGGCTGACTCTGCCTGGGCCGGCTCTCCCCTTTCCCGCATTTGCCGCCCTACCACCATCCAGGAATTGCTTTCCACTGCTTCACCCTCACATCCAATTCCCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

387

Amino Acids

42.86

Weight (kDa)

5.43

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014790)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06121 FvH4_7g06190
malus_domestica MD00G1178200.v1.1
prunus_persica Prupe.6G152900_v2.0.a1
pyrus_communis pycom11g15560
rosa_chinensis RchiOBHm_Chr1g0333821
rosa_laevigata RLG00000029528
rosa_multiflora Rmu_sc0000026.1_g000017 Rmu_sc0007177.1_g000005
rosa_roxburghii Rroxscaffold_4G00317200
rosa_rugosa Rorug01G0112100
rosa_samantha Rh1AG134500 Rh1AG134600 Rh1BG102800 Rh1CG127900 Rh1DG140000
rosa_wichuraiana Rw1G011220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
Acc16I TGCGCA 1 cut(s) 774
Acc36I ACCTGC 1 cut(s) 766
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 688
AccIII TCCGGA 1 cut(s) 835
AciI CCGC 5 cut(s) 98, 686, 823, 1090, 1099
AclWI GGATC 2 cut(s) 303, 316
AcsI RAATTY 2 cut(s) 578, 715
AfaI GTAC 4 cut(s) 707, 788, 866, 1025
AfiI CCNNNNNNNGG 1 cut(s) 1036
AflIII ACRYGT 1 cut(s) 610
AgeI ACCGGT 1 cut(s) 702
AgsI TTSAA 3 cut(s) 31, 111, 975
AjnI CCWGG 3 cut(s) 453, 1067, 1113
AluBI AGCT 7 cut(s) 83, 201, 384, 433, 448, 464, 832
AluI AGCT 7 cut(s) 83, 201, 384, 433, 448, 464, 832
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 2 cut(s) 303, 316
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 370
Aor13HI TCCGGA 1 cut(s) 835
AoxI GGCC 2 cut(s) 331, 1071
ApeKI GCWGC 6 cut(s) 375, 430, 445, 551, 799, 956
ApoI RAATTY 2 cut(s) 578, 715
AsiGI ACCGGT 1 cut(s) 702
AspLEI GCGC 3 cut(s) 537, 551, 775
AspS9I GGNCC 2 cut(s) 700, 1071
AsuHPI GGTGA 1 cut(s) 1128
AsuII TTCGAA 1 cut(s) 713
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 1 cut(s) 700
BamHI GGATCC 1 cut(s) 308
BauI CACGAG 1 cut(s) 803
BbvI GCAGC 6 cut(s) 387, 442, 457, 538, 786, 968
BccI CCATC 6 cut(s) 258, 262, 311, 494, 737, 1118
BceAI ACGGC 1 cut(s) 999
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 3 cut(s) 455, 1069, 1115
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 3 cut(s) 295, 443, 565
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 8 cut(s) 98, 376, 431, 446, 552, 800, 957, 1099
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 8 cut(s) 99, 377, 432, 447, 553, 801, 958, 1100
Bme1390I CCNGG 3 cut(s) 455, 1069, 1115
Bme18I GGWCC 1 cut(s) 700
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 700, 1071
BmiI GGNNCC 2 cut(s) 310, 623
BmrFI CCNGG 3 cut(s) 455, 1069, 1115
BmsI GCATC 4 cut(s) 551, 668, 829, 956
Bpu1102I GCTNAGC 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 868, 1068
BsaWI WCCGGW 2 cut(s) 702, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 1036
Bse118I RCCGGY 2 cut(s) 702, 1073
Bse1I ACTGG 1 cut(s) 388
BseAI TCCGGA 1 cut(s) 835
BseBI CCWGG 3 cut(s) 455, 1069, 1115
BseDI CCNNGG 2 cut(s) 868, 1068
BseGI GGATG 8 cut(s) 474, 654, 683, 844, 922, 971, 1110, 1144
BseLI CCNNNNNNNGG 1 cut(s) 1036
BseMII CTCAG 2 cut(s) 252, 440
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 2 cut(s) 658, 776
BseXI GCAGC 6 cut(s) 387, 442, 457, 538, 786, 968
BsgI GTGCAG 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 688
BshFI GGCC 2 cut(s) 333, 1073
BshTI ACCGGT 1 cut(s) 702
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 3 cut(s) 703, 836, 1074
BslI CCNNNNNNNGG 1 cut(s) 1036
BsmAI GTCTC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 2 cut(s) 333, 1073
BsoBI CYCGRG 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 713
Bsp13I TCCGGA 1 cut(s) 835
Bsp1407I TGTACA 1 cut(s) 1023
Bsp143I GATC 5 cut(s) 308, 479, 651, 765, 882
Bsp1720I GCTNAGC 1 cut(s) 449
BspACI CCGC 5 cut(s) 98, 686, 823, 1090, 1099
BspANI GGCC 2 cut(s) 333, 1073
BspCNI CTCAG 2 cut(s) 253, 441
BspEI TCCGGA 1 cut(s) 835
BspFNI CGCG 1 cut(s) 688
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 2 cut(s) 310, 623
BspMAI CTGCAG 1 cut(s) 447
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 2 cut(s) 303, 316
BspT104I TTCGAA 1 cut(s) 713
BsrFI RCCGGY 2 cut(s) 702, 1073
BsrGI TGTACA 1 cut(s) 1023
BsrI ACTGG 1 cut(s) 388
BssAI RCCGGY 2 cut(s) 702, 1073
BssECI CCNNGG 2 cut(s) 868, 1068
BssMI GATC 5 cut(s) 308, 479, 651, 765, 882
BssSI CACGAG 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 868
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 3 cut(s) 455, 1069, 1115
Bst4CI ACNGT 4 cut(s) 180, 227, 299, 569
BstAUI TGTACA 1 cut(s) 1023
BstBI TTCGAA 1 cut(s) 713
BstC8I GCNNGC 6 cut(s) 37, 275, 931, 988, 1056, 1075
BstDEI CTNAG 2 cut(s) 261, 449
BstF5I GGATG 8 cut(s) 474, 654, 683, 844, 922, 971, 1110, 1144
BstFNI CGCG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 3 cut(s) 537, 551, 775
BstKTI GATC 5 cut(s) 311, 482, 654, 768, 885
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 5 cut(s) 308, 479, 651, 765, 882
BstMWI GCNNNNNNNGC 6 cut(s) 381, 548, 694, 805, 1064, 1098
BstNI CCWGG 3 cut(s) 455, 1069, 1115
BstNSI RCATGY 3 cut(s) 277, 614, 990
BstSCI CCNGG 3 cut(s) 453, 1067, 1113
BstSFI CTRYAG 3 cut(s) 295, 443, 565
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 6 cut(s) 387, 442, 457, 538, 786, 968
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 2 cut(s) 333, 1073
BtsCI GGATG 8 cut(s) 474, 654, 683, 844, 922, 971, 1110, 1144
BtsI GCAGTG 2 cut(s) 733, 1128
BtsIMutI CAGTG 4 cut(s) 176, 574, 733, 1128
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 6 cut(s) 37, 275, 931, 988, 1056, 1075
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 363
CfoI GCGC 3 cut(s) 537, 551, 775
Cfr10I RCCGGY 2 cut(s) 702, 1073
Cfr13I GGNCC 2 cut(s) 700, 1071
Csp6I GTAC 4 cut(s) 706, 787, 865, 1024
CspAI ACCGGT 1 cut(s) 702
CviQI GTAC 4 cut(s) 706, 787, 865, 1024
DdeI CTNAG 2 cut(s) 261, 449
DpnI GATC 5 cut(s) 310, 481, 653, 767, 884
DpnII GATC 5 cut(s) 308, 479, 651, 765, 882
Eco130I CCWWGG 1 cut(s) 868
Eco147I AGGCCT 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 700
Eco88I CYCGRG 1 cut(s) 370
EcoRI GAATTC 2 cut(s) 578, 715
EcoRII CCWGG 3 cut(s) 453, 1067, 1113
EcoT14I CCWWGG 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 868
FauI CCCGC 1 cut(s) 1097
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 8 cut(s) 98, 376, 431, 446, 552, 800, 957, 1099
FokI GGATG 8 cut(s) 461, 661, 690, 851, 929, 978, 1097, 1131
Fsp4HI GCNGC 8 cut(s) 98, 376, 431, 446, 552, 800, 957, 1099
FspBI CTAG 1 cut(s) 65
FspI TGCGCA 1 cut(s) 774
GlaI GCGC 3 cut(s) 536, 550, 774
GluI GCNGC 8 cut(s) 98, 376, 431, 446, 552, 800, 957, 1099
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 2 cut(s) 333, 1073
HapII CCGG 3 cut(s) 703, 836, 1074
HhaI GCGC 3 cut(s) 537, 551, 775
Hin6I GCGC 3 cut(s) 535, 549, 773
HinP1I GCGC 3 cut(s) 535, 549, 773
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 5 cut(s) 149, 233, 244, 422, 1061
HpaII CCGG 3 cut(s) 703, 836, 1074
HphI GGTGA 1 cut(s) 1128
Hpy166II GTNNAC 4 cut(s) 136, 397, 865, 1045
Hpy188I TCNGA 5 cut(s) 232, 243, 479, 603, 784
Hpy188III TCNNGA 2 cut(s) 364, 836
Hpy8I GTNNAC 4 cut(s) 136, 397, 865, 1045
HpyAV CCTTC 1 cut(s) 741
HpyCH4III ACNGT 4 cut(s) 180, 227, 299, 569
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 7 cut(s) 222, 430, 445, 554, 657, 681, 802
HpyF10VI GCNNNNNNNGC 6 cut(s) 381, 548, 694, 805, 1064, 1098
HpyF3I CTNAG 2 cut(s) 261, 449
HpySE526I ACGT 1 cut(s) 588
HspAI GCGC 3 cut(s) 535, 549, 773
Kpn2I TCCGGA 1 cut(s) 835
KroI GCCGGC 1 cut(s) 1073
KroNI GCCGGC 1 cut(s) 1075
Kzo9I GATC 5 cut(s) 308, 479, 651, 765, 882
LmnI GCTCC 2 cut(s) 206, 825
Lsp1109I GCAGC 6 cut(s) 387, 442, 457, 538, 786, 968
LweI GCATC 4 cut(s) 551, 668, 829, 956
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 569
MalI GATC 5 cut(s) 310, 481, 653, 767, 884
MboI GATC 5 cut(s) 308, 479, 651, 765, 882
MboII GAAGA 6 cut(s) 53, 245, 277, 474, 481, 746
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 1 cut(s) 308
MluCI AATT 9 cut(s) 25, 92, 578, 709, 715, 873, 960, 1118, 1149
MlyI GAGTC 2 cut(s) 416, 1055
MroI TCCGGA 1 cut(s) 835
MroNI GCCGGC 1 cut(s) 1073
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 448
MspI CCGG 3 cut(s) 703, 836, 1074
MspR9I CCNGG 3 cut(s) 455, 1069, 1115
MunI CAATTG 1 cut(s) 960
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 3 cut(s) 455, 1069, 1115
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 6 cut(s) 381, 548, 694, 805, 1064, 1098
NaeI GCCGGC 1 cut(s) 1075
NdeII GATC 5 cut(s) 308, 479, 651, 765, 882
NgoMIV GCCGGC 1 cut(s) 1073
NlaIV GGNNCC 2 cut(s) 310, 623
NmuCI GTSAC 1 cut(s) 569
NsbI TGCGCA 1 cut(s) 774
NspI RCATGY 3 cut(s) 277, 614, 990
NspV TTCGAA 1 cut(s) 713
PaeI GCATGC 2 cut(s) 277, 990
PagI TCATGA 1 cut(s) 363
PceI AGGCCT 1 cut(s) 333
PciI ACATGT 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 1 cut(s) 931
PdiI GCCGGC 1 cut(s) 1075
PfeI GAWTC 3 cut(s) 149, 233, 244
PflFI GACNNNGTC 1 cut(s) 7
PfoI TCCNGGA 1 cut(s) 1113
PinAI ACCGGT 1 cut(s) 702
PkrI GCNGC 8 cut(s) 99, 377, 432, 447, 553, 801, 958, 1100
PleI GAGTC 2 cut(s) 416, 1055
PpsI GAGTC 2 cut(s) 416, 1055
PscI ACATGT 1 cut(s) 610
PsiI TTATAA 1 cut(s) 617
Psp6I CCWGG 3 cut(s) 453, 1067, 1113
PspGI CCWGG 3 cut(s) 453, 1067, 1113
PspN4I GGNNCC 2 cut(s) 310, 623
PspPI GGNCC 2 cut(s) 700, 1071
PstI CTGCAG 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 308
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 448
RsaI GTAC 4 cut(s) 707, 788, 866, 1025
RsaNI GTAC 4 cut(s) 706, 787, 865, 1024
RseI CAYNNNNRTG 1 cut(s) 638
SatI GCNGC 8 cut(s) 98, 376, 431, 446, 552, 800, 957, 1099
Sau3AI GATC 5 cut(s) 308, 479, 651, 765, 882
Sau96I GGNCC 2 cut(s) 700, 1071
SchI GAGTC 2 cut(s) 416, 1055
ScrFI CCNGG 3 cut(s) 455, 1069, 1115
SfaNI GCATC 4 cut(s) 551, 668, 829, 956
SfcI CTRYAG 3 cut(s) 295, 443, 565
SfuI TTCGAA 1 cut(s) 713
SinI GGWCC 1 cut(s) 700
SmiMI CAYNNNNRTG 1 cut(s) 638
SphI GCATGC 2 cut(s) 277, 990
Sse9I AATT 9 cut(s) 25, 92, 578, 709, 715, 873, 960, 1118, 1149
SseBI AGGCCT 1 cut(s) 333
SsiI CCGC 5 cut(s) 98, 686, 823, 1090, 1099
SspMI CTAG 1 cut(s) 65
StuI AGGCCT 1 cut(s) 333
StyD4I CCNGG 3 cut(s) 453, 1067, 1113
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 4 cut(s) 180, 227, 299, 569
TaiI ACGT 1 cut(s) 591
TaqI TCGA 3 cut(s) 420, 522, 713
TasI AATT 9 cut(s) 25, 92, 578, 709, 715, 873, 960, 1118, 1149
TatI WGTACW 2 cut(s) 786, 1023
TauI GCSGC 2 cut(s) 100, 1101
TfiI GAWTC 3 cut(s) 149, 233, 244
TscAI CASTG 4 cut(s) 183, 574, 733, 1135
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 6 cut(s) 375, 430, 445, 551, 799, 956
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 5 cut(s) 47, 207, 380, 463, 650
TspGWI ACGGA 1 cut(s) 921
TspRI CASTG 4 cut(s) 183, 574, 733, 1135
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 2 cut(s) 578, 715
XceI RCATGY 3 cut(s) 277, 614, 990
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.