FvH4_7g06610

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018033
Physical Location & Seq
Forward (+)
6600958 .. 6601472
515 bp
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UTR
Exon/CDS
Intron
FvH4_7g06610.t1

Sequence Viewer

Length: 444 bp
ATGGTTGCCGGTAAACAATGGGCAGTAGTGGTAGGCGACACTTGGTGCATTGCAAGGCTGCATAGAGTCATTGAGCCGGAAAAGGCCTTGCCCAGCACCAAGTTCCTAATGCATATCAATGCCACCATCCGTCTCCTGAAGCATCATGACGTTGACGATATTAGTTTCGACGACGAGCAGGAAGAGCTGATAGACATACTATTAGAAGAAGAAAACTGGAGTTGTGATGAGAAGGACGTCACAGTTGAACTCGAGTACTGTGATAACGTGAACGTGGATGCAATATTTCAGGCCCTTTCTCATCTGCAAGTGCCTCTACATGCTCATGAATCGTTGGTAGATACCATATTGTACCGGAGCCTCGAAAGCGCAAGAAACTGTGGTTCTGATGCAGATCGCAAGATATTGCATATGGAGATAAATATAGATCTTTATGTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

148

Amino Acids

16.91

Weight (kDa)

4.59

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35080 FvH4_7g06610
pyrus_communis pycom02g26040
rosa_multiflora Rmu_sc0015511.1_g000016
rosa_roxburghii Rroxscaffold_4G00316090 Rroxscaffold_5G00385190
rosa_rugosa Rorug01G0121900 Rorug04G0354500
rosa_samantha Rh1AG142900 Rh1BG112100
rosa_wichuraiana Rw4G035620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 45
AfaI GTAC 2 cut(s) 257, 353
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 2 cut(s) 84, 291
ApeKI GCWGC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 251
BbvI GCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 137
BglII AGATCT 1 cut(s) 427
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BmcAI AGTACT 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 359
BmsI GCATC 3 cut(s) 151, 268, 379
BpmI CTGGAG 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 354
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 393
BseGI GGATG 2 cut(s) 126, 283
BseJI GATNNNNATC 1 cut(s) 393
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 2 cut(s) 86, 293
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 3 cut(s) 9, 77, 355
BsmAI GTCTC 1 cut(s) 137
BsmBI CGTCTC 1 cut(s) 137
BsnI GGCC 2 cut(s) 86, 293
BsoBI CYCGRG 1 cut(s) 251
Bsp143I GATC 2 cut(s) 394, 427
BspANI GGCC 2 cut(s) 86, 293
BspHI TCATGA 2 cut(s) 145, 325
BspLI GGNNCC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 8
BssMI GATC 2 cut(s) 394, 427
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 3 cut(s) 244, 260, 380
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 237
BstF5I GGATG 2 cut(s) 126, 283
BstHHI GCGC 1 cut(s) 371
BstKTI GATC 2 cut(s) 397, 430
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 394, 427
BstMWI GCNNNNNNNGC 2 cut(s) 184, 366
BstNSI RCATGY 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 2 cut(s) 86, 293
BtsCI GGATG 2 cut(s) 126, 283
CciI TCATGA 2 cut(s) 145, 325
CfoI GCGC 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 256, 352
CviAII CATG 3 cut(s) 146, 320, 326
CviJI RGCY 6 cut(s) 58, 76, 86, 187, 293, 360
CviKI_1 RGCY 6 cut(s) 58, 76, 86, 187, 293, 360
CviQI GTAC 2 cut(s) 256, 352
DpnI GATC 2 cut(s) 396, 429
DpnII GATC 2 cut(s) 394, 427
DraIII CACNNNGTG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 137
FaeI CATG 3 cut(s) 149, 323, 329
FatI CATG 3 cut(s) 145, 319, 325
FauNDI CATATG 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 2 cut(s) 113, 290
Fsp4HI GCNGC 1 cut(s) 59
GlaI GCGC 1 cut(s) 370
GluI GCNGC 1 cut(s) 59
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 2 cut(s) 86, 293
HapII CCGG 3 cut(s) 9, 77, 355
HhaI GCGC 1 cut(s) 371
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 3 cut(s) 149, 323, 329
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 66, 329
HpaII CCGG 3 cut(s) 9, 77, 355
Hpy166II GTNNAC 3 cut(s) 14, 154, 271
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 3 cut(s) 136, 146, 326
Hpy8I GTNNAC 3 cut(s) 14, 154, 271
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 3 cut(s) 244, 260, 380
HpyCH4IV ACGT 4 cut(s) 150, 237, 267, 273
HpyCH4V TGCA 8 cut(s) 48, 53, 61, 112, 281, 307, 392, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 366
HpySE526I ACGT 4 cut(s) 150, 237, 267, 273
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 3 cut(s) 149, 323, 329
HspAI GCGC 1 cut(s) 369
Kzo9I GATC 2 cut(s) 394, 427
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 8 cut(s) 22, 90, 106, 149, 164, 202, 275, 368
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 3 cut(s) 151, 268, 379
MaeII ACGT 4 cut(s) 150, 237, 267, 273
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 396, 429
MboI GATC 2 cut(s) 394, 427
MboII GAAGA 3 cut(s) 194, 218, 221
MflI RGATCY 1 cut(s) 427
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 2 cut(s) 324, 371
Mph1103I ATGCAT 1 cut(s) 114
MslI CAYNNNNRTG 2 cut(s) 117, 324
MspI CCGG 3 cut(s) 9, 77, 355
MwoI GCNNNNNNNGC 2 cut(s) 184, 366
NdeI CATATG 1 cut(s) 411
NdeII GATC 2 cut(s) 394, 427
NlaIII CATG 3 cut(s) 149, 323, 329
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 114
NspI RCATGY 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 251
PagI TCATGA 2 cut(s) 145, 325
PceI AGGCCT 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 292
PspXI VCTCGAGB 1 cut(s) 251
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 2 cut(s) 257, 353
RsaNI GTAC 2 cut(s) 256, 352
RseI CAYNNNNRTG 2 cut(s) 117, 324
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 2 cut(s) 394, 427
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 257
SchI GAGTC 1 cut(s) 75
SetI ASST 5 cut(s) 153, 189, 240, 270, 276
SfaNI GCATC 3 cut(s) 151, 268, 379
Sfr274I CTCGAG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 117, 324
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 86
SspI AATATT 1 cut(s) 285
StuI AGGCCT 1 cut(s) 86
TaaI ACNGT 3 cut(s) 244, 260, 380
TaiI ACGT 4 cut(s) 153, 240, 270, 276
TaqI TCGA 3 cut(s) 168, 252, 363
TatI WGTACW 1 cut(s) 255
TfiI GAWTC 1 cut(s) 329
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 251
ZraI GACGTC 1 cut(s) 238
ZrmI AGTACT 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.