Rh1AG142900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018033
Physical Location & Seq
Forward (+)
26986540 .. 27003235
16696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG142900.1

Sequence Viewer

Length: 327 bp
ATGGGTTGTGGTGGGCGACATTTGGTGCATTGCAAGGTTGCACAGAGTCATCGAACCAGAAAAGTCTTGCCCTGCATCAAGTTCTTAATGCATATTAATGCCACCATTCGTCGACTGCAGAAACAGCATGGTGACAATACAAGTCTCGATGACAACGACCAGGAAGATCTGATAGACATATTATTAGAAGAAGAAAACTGGAGCTCTAATGAGAAGGACATCACAATCGAACTTGAGTGTGACGACCCATATGACGTGAACATGGATGCAATACTAAGGCCCTTTCTCAACTGCAAGTGCCGTTACAAGCTCAGGAATCGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.75

Weight (kDa)

6.18

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35080 FvH4_7g06610
pyrus_communis pycom02g26040
rosa_multiflora Rmu_sc0015511.1_g000016
rosa_roxburghii Rroxscaffold_4G00316090 Rroxscaffold_5G00385190
rosa_rugosa Rorug01G0121900 Rorug04G0354500
rosa_samantha Rh1AG142900 Rh1BG112100
rosa_wichuraiana Rw4G035620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 112
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 204, 310
AluI AGCT 2 cut(s) 204, 310
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 278
AseI ATTAAT 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 116
BglII AGATCT 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 84, 256
BpmI CTGGAG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 203
BshFI GGCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 203
BssMI GATC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 275, 311
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 280
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 279
CviAII CATG 2 cut(s) 128, 262
CviJI RGCY 3 cut(s) 204, 280, 310
CviKI_1 RGCY 3 cut(s) 204, 280, 310
DdeI CTNAG 2 cut(s) 275, 311
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 206
FaeI CATG 2 cut(s) 131, 265
FaiI YATR 6 cut(s) 93, 129, 179, 250, 252, 263
FatI CATG 2 cut(s) 127, 261
FauNDI CATATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 112
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 2 cut(s) 131, 265
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 2 cut(s) 46, 316
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 113, 259
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 2 cut(s) 146, 313
Hpy8I GTNNAC 2 cut(s) 113, 259
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 8 cut(s) 28, 33, 41, 75, 91, 118, 269, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 2 cut(s) 275, 311
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 131, 265
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 6 cut(s) 70, 85, 146, 173, 184, 298
LweI GCATC 2 cut(s) 84, 256
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 131, 239, 302
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 176, 200, 203
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 206
MlyI GAGTC 1 cut(s) 55
Mph1103I ATGCAT 1 cut(s) 93
MseI TTAA 2 cut(s) 86, 96
MslI CAYNNNNRTG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeI CATATG 1 cut(s) 250
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 131, 265
NmuCI GTSAC 2 cut(s) 131, 239
NsiI ATGCAT 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 1 cut(s) 316
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 96
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspPI GGNCC 1 cut(s) 279
PstI CTGCAG 1 cut(s) 120
PsuI RGATCY 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 206
SalI GTCGAC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 86, 96
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 206
SetI ASST 4 cut(s) 39, 206, 258, 312
SfaNI GCATC 2 cut(s) 84, 256
SfcI CTRYAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 258
TaqI TCGA 4 cut(s) 52, 112, 147, 228
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 86, 96
Tru9I TTAA 2 cut(s) 86, 96
TseFI GTSAC 2 cut(s) 131, 239
Tsp45I GTSAC 2 cut(s) 131, 239
VspI ATTAAT 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.