Rh1BG112100

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018033
Physical Location & Seq
Forward (+)
19095473 .. 19097280
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG112100.1

Sequence Viewer

Length: 573 bp
ATGGGTTGGCACCAACGCTATTCTCTTATTGTCATGCAGGATGTTTTGGACGTTGGTGATGACTTGGTCTCACTTGAGCTCACAATATGTTCGACTATTCAAGATAACAACATCTTCATGGCCGATGAACAATGGGTTGTGGTGGGCGACACTTGGTGCATTGCAAGGTTGCACAGAGTCATCGAACCAGAAAAGGCCTTGTCCTGCATCAAGTTCTTAATGCATATTAATGCCACCATTCGTCAACTGCAGAAACAGCATGGTGACAATACAAGTTTCGATGACAACGACCAGGAAGATCTAATAGACATATTATTAGAAGAAGAAAACTGGAGTTCTAATGAGAAGGACATCACAATCGAACTCGAGTGTGACGACCCATATGACTTGAACATGGATGCAATATCTAAGGCCCTTTCTCAACTGCAAGTGCCGTTACAGGCTCAGGAATCGTTGGTAGACACCATATTATTATGGAGCTTCGAAAGTGCAAGAAACTGCGGTTCTTATGTAGATCGCAAGATTTTGCATATGGAGATTAGTGTAGATCTTTATGTTGTTTCAGTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

190

Amino Acids

21.83

Weight (kDa)

4.19

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35080 FvH4_7g06610
pyrus_communis pycom02g26040
rosa_multiflora Rmu_sc0015511.1_g000016
rosa_roxburghii Rroxscaffold_4G00316090 Rroxscaffold_5G00385190
rosa_rugosa Rorug01G0121900 Rorug04G0354500
rosa_samantha Rh1AG142900 Rh1BG112100
rosa_wichuraiana Rw4G035620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 459
AciI CCGC 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 120
AdeI CACNNNGTG 1 cut(s) 156
AgsI TTSAA 2 cut(s) 101, 391
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 2 cut(s) 79, 480
AluI AGCT 2 cut(s) 79, 480
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 3 cut(s) 120, 195, 411
AseI ATTAAT 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 68, 275
AsuII TTCGAA 1 cut(s) 483
AvaI CYCGRG 1 cut(s) 365
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 248
BglII AGATCT 2 cut(s) 298, 547
Bme1390I CCNGG 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 216, 388
BpmI CTGGAG 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 293
BseGI GGATG 2 cut(s) 46, 403
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 335
BshFI GGCC 3 cut(s) 122, 197, 413
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 3 cut(s) 122, 197, 413
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 298, 514, 547
BspACI CCGC 1 cut(s) 501
BspANI GGCC 3 cut(s) 122, 197, 413
BspCNI CTCAG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 335
BssMI GATC 3 cut(s) 298, 514, 547
Bst2UI CCWGG 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 408, 444
BstF5I GGATG 2 cut(s) 46, 403
BstKTI GATC 3 cut(s) 301, 517, 550
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 298, 514, 547
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 248
BstX2I RGATCY 2 cut(s) 298, 547
BstYI RGATCY 2 cut(s) 298, 547
BsuRI GGCC 3 cut(s) 122, 197, 413
BtsCI GGATG 2 cut(s) 46, 403
Cfr13I GGNCC 1 cut(s) 412
CviAII CATG 4 cut(s) 34, 118, 260, 394
CviJI RGCY 6 cut(s) 79, 122, 197, 413, 443, 480
CviKI_1 RGCY 6 cut(s) 79, 122, 197, 413, 443, 480
DdeI CTNAG 2 cut(s) 408, 444
DpnI GATC 3 cut(s) 300, 516, 549
DpnII GATC 3 cut(s) 298, 514, 547
DraIII CACNNNGTG 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 4 cut(s) 37, 121, 263, 397
FatI CATG 4 cut(s) 33, 117, 259, 393
FauNDI CATATG 2 cut(s) 382, 531
FblI GTMKAC 1 cut(s) 459
FokI GGATG 2 cut(s) 53, 410
FriOI GRGCYC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 3 cut(s) 122, 197, 413
Hin1II CATG 4 cut(s) 37, 121, 263, 397
HincII GTYRAC 1 cut(s) 245
HindII GTYRAC 1 cut(s) 245
HinfI GANTC 2 cut(s) 177, 449
HphI GGTGA 2 cut(s) 68, 275
Hpy166II GTNNAC 2 cut(s) 245, 460
Hpy188III TCNNGA 2 cut(s) 101, 446
Hpy8I GTNNAC 2 cut(s) 245, 460
HpyAV CCTTC 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 408, 444
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 4 cut(s) 37, 121, 263, 397
Kzo9I GATC 3 cut(s) 298, 514, 547
LmnI GCTCC 1 cut(s) 477
LpnPI CCDG 8 cut(s) 23, 201, 217, 278, 305, 316, 425, 431
LweI GCATC 2 cut(s) 216, 388
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 263, 371, 435
MalI GATC 3 cut(s) 300, 516, 549
MboI GATC 3 cut(s) 298, 514, 547
MboII GAAGA 4 cut(s) 106, 308, 332, 335
MflI RGATCY 2 cut(s) 298, 547
MhlI GDGCHC 1 cut(s) 81
MlyI GAGTC 1 cut(s) 186
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 2 cut(s) 218, 228
MslI CAYNNNNRTG 2 cut(s) 116, 228
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeI CATATG 2 cut(s) 382, 531
NdeII GATC 3 cut(s) 298, 514, 547
NlaIII CATG 4 cut(s) 37, 121, 263, 397
NlaIV GGNNCC 1 cut(s) 11
NmuCI GTSAC 2 cut(s) 263, 371
NsiI ATGCAT 1 cut(s) 225
NspV TTCGAA 1 cut(s) 483
PaeR7I CTCGAG 1 cut(s) 365
PceI AGGCCT 1 cut(s) 197
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 372
PfeI GAWTC 1 cut(s) 449
PflFI GACNNNGTC 1 cut(s) 65
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 1 cut(s) 412
PspXI VCTCGAGB 1 cut(s) 365
PstI CTGCAG 1 cut(s) 252
PsuI RGATCY 2 cut(s) 298, 547
PsyI GACNNNGTC 1 cut(s) 65
RseI CAYNNNNRTG 2 cut(s) 116, 228
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 218, 228
Sau3AI GATC 3 cut(s) 298, 514, 547
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 81
SetI ASST 4 cut(s) 54, 81, 170, 482
SfaNI GCATC 2 cut(s) 216, 388
SfcI CTRYAG 1 cut(s) 248
Sfr274I CTCGAG 1 cut(s) 365
SfuI TTCGAA 1 cut(s) 483
SlaI CTCGAG 1 cut(s) 365
SmiMI CAYNNNNRTG 2 cut(s) 116, 228
SmlI CTYRAG 2 cut(s) 74, 365
SmoI CTYRAG 2 cut(s) 74, 365
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 1 cut(s) 501
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 291
TaiI ACGT 1 cut(s) 54
TaqI TCGA 6 cut(s) 92, 183, 279, 360, 366, 483
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 2 cut(s) 218, 228
Tru9I TTAA 2 cut(s) 218, 228
TseFI GTSAC 2 cut(s) 263, 371
Tsp45I GTSAC 2 cut(s) 263, 371
TspDTI ATGAA 2 cut(s) 106, 141
Tth111I GACNNNGTC 1 cut(s) 65
VspI ATTAAT 1 cut(s) 228
XhoI CTCGAG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.