Rorug01G0121900

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018033
Physical Location & Seq
Forward (+)
21150329 .. 21151396
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0121900.1

Sequence Viewer

Length: 1068 bp
ATGGAATCGGGTGCTTACCCAGTTGGTTACAGATTTCATCCTACAGACCTGGAATTGGTGGCTTACTACCTCCACAACCGGGTTGCCATGGTTGATCAGTTTCGCTCGAGTCCAATCTTTGATTTTCCTGATTTCTATGGCAAAAATGAGCCCTGCCTCATTTGGGACATGTTCCGTGCCCAATCCAACAGTCCTATGAAGGAGGAGGAGGAAGAACCTTTATATTTCTTCACTCACCGCAAGAAATTGAATCCCAAAGCGAAAAAATTTGATAGGAAAGTGGGATCGGGAACATGGAGTGCCCAGTATTCAAAAAATGTTGTTGCTGCCGATGATAGTGTTGTTGGAATTAAGAGAGAATTTCGGTATGAGGGTGGATCTGATCCACATCAAAATGGGGCTTGGTTGATGCAGGAGTACCAGATCACATCTCACAGTAATGATCTCGTACTCTGCACCCTCAGAAAAAATCCCAGAAAACTTCCACCCCCAACTTGTCCTGCTGCTCTGAATCATCAGAGCCACAATATTATTAGCAACAAAAGGAAGATGAAATTCAGTGAGGATGAGGAGGATATAAACACAAAGACAAAGACTTTCAAAAGAAAAAAAATGGAACCTCCTAAACAAAAACAACAACTAATGTTGCCCTCTACCTCTTACTTGTTTGAGCAGCAGTTTGATCAATCTAAAATATTGTTTGATATCGATGAGCTCTGTTATATTGATGATCAGCAGGAGAGCAATGATGATCTCATGGCTTCATTTGCTCCATCATTTGTTACTGATGATCAGCTTGAGGTTGTTGAGGTTGAGAAGGAGGGCAGTAATGATGATCTCATGGTCTCAGCTGGTCAACCGTTATCTGCTAGTGATCATCAGATTCAAACTGTTCAGGTCGACGAGACTAATAATTCCATTACTAATTCTCCTAATGATACTTCATATGCGTATTTTGATCCTGAAGTTGAGGCATTCTTTGGCTTGACTACTGATGATATATATGATGATGATGATTGTCAGTTTTCGAGTTCTGAAATACAGGCATTCTTAGCTTGTCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2 zf-rbx1

Protein Analysis

355

Amino Acids

40.8

Weight (kDa)

4.68

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 142 3.3e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35080 FvH4_7g06610
pyrus_communis pycom02g26040
rosa_multiflora Rmu_sc0015511.1_g000016
rosa_roxburghii Rroxscaffold_4G00316090 Rroxscaffold_5G00385190
rosa_rugosa Rorug01G0121900 Rorug04G0354500
rosa_samantha Rh1AG142900 Rh1BG112100
rosa_wichuraiana Rw4G035620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 900
AciI CCGC 1 cut(s) 238
AclWI GGATC 4 cut(s) 292, 377, 385, 953
AcsI RAATTY 3 cut(s) 266, 359, 554
AcuI CTGAAG 1 cut(s) 984
AfaI GTAC 2 cut(s) 419, 450
AfiI CCNNNNNNNGG 3 cut(s) 55, 79, 163
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 4 cut(s) 250, 312, 601, 887
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 4 cut(s) 715, 796, 851, 1055
AluI AGCT 4 cut(s) 715, 796, 851, 1055
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 2 cut(s) 850, 899
AlwI GGATC 4 cut(s) 292, 377, 385, 953
Ama87I CYCGRG 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 326, 503, 673
ApoI RAATTY 3 cut(s) 266, 359, 554
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 2 cut(s) 181, 304
BanII GRGCYC 2 cut(s) 153, 717
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 3 cut(s) 313, 490, 685
BccI CCATC 1 cut(s) 781
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 5 cut(s) 94, 682, 730, 790, 874
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 850, 899
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 3 cut(s) 327, 504, 674
BlsI GCNGC 3 cut(s) 328, 505, 675
Bme1390I CCNGG 2 cut(s) 50, 80
BmeT110I CYCGRG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 618
BmrFI CCNGG 2 cut(s) 50, 80
BmrI ACTGGG 2 cut(s) 14, 298
BmsI GCATC 1 cut(s) 399
BmuI ACTGGG 2 cut(s) 14, 298
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 708
BsaBI GATNNNNATC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 850
BsaJI CCNNGG 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 913, 943
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 79, 163
Bse1I ACTGG 2 cut(s) 20, 304
Bse3DI GCAATG 1 cut(s) 751
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 37, 571
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 3 cut(s) 55, 79, 163
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 2 cut(s) 475, 861
BseNI ACTGG 2 cut(s) 20, 304
BseRI GAGGAG 3 cut(s) 218, 221, 584
BseSI GKGCMC 2 cut(s) 181, 304
BseXI GCAGC 3 cut(s) 313, 490, 685
BsgI GTGCAG 1 cut(s) 439
BshVI ATCGAT 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 717
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 3 cut(s) 55, 79, 163
BsmAI GTCTC 2 cut(s) 850, 899
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 2 cut(s) 974, 1046
Bso31I GGTCTC 1 cut(s) 850
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 4 cut(s) 153, 181, 304, 717
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 474, 860
BspDI ATCGAT 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 618
BspPI GGATC 4 cut(s) 292, 377, 385, 953
BspTNI GGTCTC 1 cut(s) 850
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 2 cut(s) 20, 304
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 4 cut(s) 191, 437, 861, 892
BstDEI CTNAG 3 cut(s) 461, 847, 1051
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 37, 571
BstMAI GTCTC 2 cut(s) 850, 899
BstMWI GCNNNNNNNGC 2 cut(s) 767, 1052
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 48, 78
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 2 cut(s) 181, 304
BstV1I GCAGC 3 cut(s) 313, 490, 685
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 708
BsuTUI ATCGAT 1 cut(s) 708
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 37, 571
BtsIMutI CAGTG 1 cut(s) 565
ClaI ATCGAT 1 cut(s) 708
Csp6I GTAC 2 cut(s) 418, 449
CviAII CATG 5 cut(s) 88, 169, 294, 757, 841
CviQI GTAC 2 cut(s) 418, 449
DdeI CTNAG 3 cut(s) 461, 847, 1051
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 153, 717
Eco31I GGTCTC 1 cut(s) 850
Eco32I GATATC 1 cut(s) 706
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 984
Eco88I CYCGRG 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 715
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 153, 717
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 5 cut(s) 91, 172, 297, 760, 844
FaqI GGGAC 1 cut(s) 179
FatI CATG 5 cut(s) 87, 168, 293, 756, 840
FauNDI CATATG 1 cut(s) 946
FbaI TGATCA 5 cut(s) 94, 682, 730, 790, 874
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 3 cut(s) 327, 504, 674
FokI GGATG 2 cut(s) 24, 578
FriOI GRGCYC 2 cut(s) 153, 717
Fsp4HI GCNGC 3 cut(s) 327, 504, 674
FspBI CTAG 1 cut(s) 870
GluI GCNGC 3 cut(s) 327, 504, 674
HapII CCGG 1 cut(s) 79
Hin1II CATG 5 cut(s) 91, 172, 297, 760, 844
HincII GTYRAC 2 cut(s) 857, 901
HindII GTYRAC 2 cut(s) 857, 901
HinfI GANTC 5 cut(s) 5, 109, 250, 511, 883
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 857, 901
Hpy188I TCNGA 6 cut(s) 382, 464, 510, 519, 882, 1036
Hpy188III TCNNGA 4 cut(s) 128, 288, 962, 1061
Hpy8I GTNNAC 2 cut(s) 857, 901
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 2 cut(s) 193, 811
HpyCH4III ACNGT 4 cut(s) 191, 437, 861, 892
HpyCH4V TGCA 2 cut(s) 412, 456
HpyF10VI GCNNNNNNNGC 2 cut(s) 767, 1052
HpyF3I CTNAG 3 cut(s) 461, 847, 1051
Hsp92II CATG 5 cut(s) 91, 172, 297, 760, 844
Ksp22I TGATCA 5 cut(s) 94, 682, 730, 790, 874
LmnI GCTCC 1 cut(s) 775
Lsp1109I GCAGC 3 cut(s) 313, 490, 685
LweI GCATC 1 cut(s) 399
MaeI CTAG 1 cut(s) 870
MaeIII GTNAC 2 cut(s) 26, 781
MboII GAAGA 3 cut(s) 220, 224, 559
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 4 cut(s) 153, 181, 304, 717
MluCI AATT 8 cut(s) 53, 245, 266, 348, 359, 554, 913, 925
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 210, 325
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 2 cut(s) 393, 438
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 50, 80
Mva1269I GAATGC 2 cut(s) 974, 1046
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 767, 1052
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 946
NlaIII CATG 5 cut(s) 91, 172, 297, 760, 844
NlaIV GGNNCC 1 cut(s) 618
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 106
PciI ACATGT 1 cut(s) 168
PctI GAATGC 2 cut(s) 974, 1046
PfeI GAWTC 4 cut(s) 5, 250, 511, 883
PkrI GCNGC 3 cut(s) 328, 505, 675
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PscI ACATGT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 618
PspXI VCTCGAGB 1 cut(s) 106
PsuI RGATCY 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 2 cut(s) 419, 450
RsaNI GTAC 2 cut(s) 418, 449
RseI CAYNNNNRTG 2 cut(s) 393, 438
SacI GAGCTC 1 cut(s) 717
SalI GTCGAC 1 cut(s) 899
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 3 cut(s) 327, 504, 674
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 50, 80
SduI GDGCHC 4 cut(s) 153, 181, 304, 717
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 393, 438
SmlI CTYRAG 2 cut(s) 106, 797
SmoI CTYRAG 2 cut(s) 106, 797
Sse9I AATT 8 cut(s) 53, 245, 266, 348, 359, 554, 913, 925
SsiI CCGC 1 cut(s) 238
SspI AATATT 2 cut(s) 529, 696
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 717
StyD4I CCNGG 2 cut(s) 48, 78
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 4 cut(s) 191, 437, 861, 892
TaqI TCGA 4 cut(s) 107, 708, 900, 1028
TasI AATT 8 cut(s) 53, 245, 266, 348, 359, 554, 913, 925
TfiI GAWTC 4 cut(s) 5, 250, 511, 883
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 565
TseI GCWGC 3 cut(s) 326, 503, 673
TspDTI ATGAA 5 cut(s) 26, 212, 566, 753, 933
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 1 cut(s) 565
XapI RAATTY 3 cut(s) 266, 359, 554
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 900
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.