Rmu_sc0015511.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015511.1
OG0018033
Physical Location & Seq
Forward (+)
50005 .. 50355
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015511.1_g000016.1.cds

Sequence Viewer

Length: 351 bp
atggatttagatgttaatatgttattaacagcaaagaattggagtgtggaagaggacgaagccacaatcgagttctattacgacgaagattatgatgttaatgttgctgccatgaagtccatttccgacgcactatgtggcctgcaggttccagtccagactcattcgtccttgatcgacagaatattgttccaagcttccaacgccataaggaattgtgaggaggattgtaagtatgttgggctattctcattcaacacacacaaattcccaaagtcactaggaaatcagaagttgcacaagaccaggagaggacttctccaacattctcggtggtccaaggaagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.39

Weight (kDa)

5.32

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35080 FvH4_7g06610
pyrus_communis pycom02g26040
rosa_multiflora Rmu_sc0015511.1_g000016
rosa_roxburghii Rroxscaffold_4G00316090 Rroxscaffold_5G00385190
rosa_rugosa Rorug01G0121900 Rorug04G0354500
rosa_samantha Rh1AG142900 Rh1BG112100
rosa_wichuraiana Rw4G035620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 336
AvaII GGWCC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 307
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 307
BplI GAGNNNNNCTC 2 cut(s) 303, 335
BsaJI CCNNGG 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 141
BsnI GGCC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 174
BspANI GGCC 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 141
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 1 cut(s) 137
CviAII CATG 1 cut(s) 112
CviJI RGCY 4 cut(s) 62, 141, 197, 244
CviKI_1 RGCY 4 cut(s) 62, 141, 197, 244
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DraIII CACNNNGTG 1 cut(s) 137
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 115
FaiI YATR 6 cut(s) 20, 93, 113, 136, 209, 237
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 281
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 127, 291
Hpy188III TCNNGA 1 cut(s) 157
Hpy99I CGWCG 2 cut(s) 86, 131
HpyCH4V TGCA 2 cut(s) 145, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 6 cut(s) 131, 155, 165, 170, 292, 319
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 276
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 62, 98
MluCI AATT 3 cut(s) 37, 214, 266
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 3 cut(s) 150, 225, 346
MnlI CCTC 4 cut(s) 46, 214, 217, 305
MseI TTAA 3 cut(s) 15, 26, 99
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 147
SaqAI TTAA 3 cut(s) 15, 26, 99
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 336
SbfI CCTGCAGG 1 cut(s) 147
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 307
SdaI CCTGCAGG 1 cut(s) 147
SetI ASST 2 cut(s) 150, 199
SfcI CTRYAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 336
Sse8387I CCTGCAGG 1 cut(s) 147
Sse9I AATT 3 cut(s) 37, 214, 266
SspI AATATT 1 cut(s) 186
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 339
TaqI TCGA 2 cut(s) 69, 177
TasI AATT 3 cut(s) 37, 214, 266
Tru1I TTAA 3 cut(s) 15, 26, 99
Tru9I TTAA 3 cut(s) 15, 26, 99
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 1 cut(s) 266
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.