FvH4_7g08170

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016915
Physical Location & Seq
Reverse (-)
8150705 .. 8152885
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08170.t2

Sequence Viewer

Length: 519 bp
ATGACTGACCTGACATCTGCTCTCGAAGTCTATGACATTTCTTGCCAACTGAATGTGGATGAGCAGCTTTTCCCAGCCTGTAAGATGACATTCTCCATACCCAGGACAAACAGTGAAGCTACTATTGCCATGGCCAGGAATGCTCTTGAATATTTGCAATTGCTGCCATCTTTTGATCCTCGTATGGTGATAAACTACCTCAAAGGAAGTTCTGCTGTAGATATCCTGACCGGTTATCAGGAAAATGGGCTTGCTTCAATTCATGAAATCAAACAAAATCAGTTCTCTGAGCGGAACACACTCCTCTTTCATTCTTTGGAGGAACTTGAACGTCTTACTGGATGTTATATTTGGCATGATTATGAGTCCCGGGTTATTATTGTGGGTACGACTGAAGGATCAAGTCTAGCAAGGGAGGTTGTGGAAGACTGCATCGTTCGTAATGTGCCTCCTGCGCACAAATTCAACGAACTCATGACAAGTCAAGCGTCACAGAAACTTGAGACTTCACGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.47

Weight (kDa)

4.88

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 121 - 181 1.7e-07 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 456
AccBSI CCGCTC 1 cut(s) 292
AciI CCGC 1 cut(s) 292
AclWI GGATC 2 cut(s) 170, 406
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 2 cut(s) 102, 135
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 4 cut(s) 149, 258, 329, 466
AjnI CCWGG 2 cut(s) 101, 134
AleI CACNNNNGTG 1 cut(s) 514
AluBI AGCT 2 cut(s) 67, 119
AluI AGCT 2 cut(s) 67, 119
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 2 cut(s) 170, 406
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 64, 163
ApoI RAATTY 1 cut(s) 461
ArsI GACNNNNNNTTYG 1 cut(s) 496
AsiGI ACCGGT 1 cut(s) 230
AspLEI GCGC 1 cut(s) 457
AsuC2I CCSGG 2 cut(s) 370, 371
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 369
BalI TGGCCA 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 432
BbvI GCAGC 2 cut(s) 76, 150
BccI CCATC 1 cut(s) 175
BciT130I CCWGG 2 cut(s) 103, 136
BcnI CCSGG 2 cut(s) 370, 371
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 65, 164
BlsI GCNGC 2 cut(s) 66, 165
Bme1390I CCNGG 4 cut(s) 103, 136, 370, 371
BmeT110I CYCGRG 1 cut(s) 369
BmrFI CCNGG 4 cut(s) 103, 136, 370, 371
BmsI GCATC 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 432
BpuMI CCSGG 2 cut(s) 370, 371
BsaJI CCNNGG 3 cut(s) 101, 129, 369
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 135
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 2 cut(s) 103, 136
BseDI CCNNGG 3 cut(s) 101, 129, 369
BseGI GGATG 2 cut(s) 64, 347
BseLI CCNNNNNNNGG 2 cut(s) 102, 135
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 76, 150
BseYI CCCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 134
BshTI ACCGGT 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 231, 370
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 102, 135
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 369
Bsp143I GATC 2 cut(s) 175, 398
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 280
BspHI TCATGA 2 cut(s) 262, 474
BspPI GGATC 2 cut(s) 170, 406
BsrBI CCGCTC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 3 cut(s) 101, 129, 369
BssMI GATC 2 cut(s) 175, 398
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 103, 136
Bst4CI ACNGT 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 64, 347
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 2 cut(s) 178, 401
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 2 cut(s) 175, 398
BstMWI GCNNNNNNNGC 4 cut(s) 125, 140, 163, 454
BstNI CCWGG 2 cut(s) 103, 136
BstSCI CCNGG 4 cut(s) 101, 134, 368, 369
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 76, 150
BstV2I GAAGAC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 2 cut(s) 64, 347
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 252
CciI TCATGA 2 cut(s) 262, 474
CfoI GCGC 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 230
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 1 cut(s) 477
Csp6I GTAC 1 cut(s) 387
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 4 cut(s) 130, 263, 356, 475
CviJI RGCY 5 cut(s) 67, 77, 119, 134, 250
CviKI_1 RGCY 5 cut(s) 67, 77, 119, 134, 250
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 177, 400
DpnII GATC 2 cut(s) 175, 398
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 129
Eco32I GATATC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 101, 134
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 4 cut(s) 133, 266, 359, 478
FaiI YATR 9 cut(s) 33, 98, 131, 185, 264, 348, 357, 363, 476
FaqI GGGAC 1 cut(s) 352
FatI CATG 4 cut(s) 129, 262, 355, 474
Fnu4HI GCNGC 2 cut(s) 65, 164
FokI GGATG 2 cut(s) 71, 354
Fsp4HI GCNGC 2 cut(s) 65, 164
FspBI CTAG 1 cut(s) 407
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 1 cut(s) 456
GluI GCNGC 2 cut(s) 65, 164
GsaI CCCAGC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 134
HapII CCGG 2 cut(s) 231, 370
HgaI GACGC 1 cut(s) 477
HhaI GCGC 1 cut(s) 457
Hin1II CATG 4 cut(s) 133, 266, 359, 478
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HinfI GANTC 1 cut(s) 365
HpaII CCGG 2 cut(s) 231, 370
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 6 cut(s) 23, 146, 226, 239, 263, 475
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 331, 511
HpyCH4V TGCA 2 cut(s) 157, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 140, 163, 454
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 2 cut(s) 331, 511
Hsp92II CATG 4 cut(s) 133, 266, 359, 478
HspAI GCGC 1 cut(s) 455
Kzo9I GATC 2 cut(s) 175, 398
Lsp1109I GCAGC 2 cut(s) 76, 150
LweI GCATC 1 cut(s) 441
MaeI CTAG 1 cut(s) 407
MaeII ACGT 2 cut(s) 331, 511
MaeIII GTNAC 1 cut(s) 489
MalI GATC 2 cut(s) 177, 400
MbiI CCGCTC 1 cut(s) 292
MboI GATC 2 cut(s) 175, 398
MboII GAAGA 1 cut(s) 437
MfeI CAATTG 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 3 cut(s) 158, 258, 461
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 6 cut(s) 189, 209, 313, 314, 409, 459
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MslI CAYNNNNRTG 2 cut(s) 360, 514
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 2 cut(s) 231, 370
MspR9I CCNGG 4 cut(s) 103, 136, 370, 371
MunI CAATTG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 2 cut(s) 103, 136
MwoI GCNNNNNNNGC 4 cut(s) 125, 140, 163, 454
NciI CCSGG 2 cut(s) 370, 371
NcoI CCATGG 1 cut(s) 129
NdeII GATC 2 cut(s) 175, 398
NlaIII CATG 4 cut(s) 133, 266, 359, 478
NmuCI GTSAC 1 cut(s) 489
NsbI TGCGCA 1 cut(s) 456
OliI CACNNNNGTG 1 cut(s) 514
PagI TCATGA 2 cut(s) 262, 474
PctI GAATGC 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 2 cut(s) 66, 165
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 101, 134
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 2 cut(s) 101, 134
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 2 cut(s) 360, 514
SatI GCNGC 2 cut(s) 65, 164
Sau3AI GATC 2 cut(s) 175, 398
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 4 cut(s) 103, 136, 370, 371
SetI ASST 7 cut(s) 12, 69, 121, 201, 334, 420, 514
SfaNI GCATC 1 cut(s) 441
SfcI CTRYAG 1 cut(s) 216
SmaI CCCGGG 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 360, 514
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 3 cut(s) 158, 258, 461
SsiI CCGC 1 cut(s) 292
SspI AATATT 1 cut(s) 152
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 4 cut(s) 101, 134, 368, 369
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 2 cut(s) 334, 514
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 158, 258, 461
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 489
TseI GCWGC 2 cut(s) 64, 163
Tsp45I GTSAC 1 cut(s) 489
TspDTI ATGAA 3 cut(s) 251, 279, 299
TspMI CCCGGG 1 cut(s) 369
TspRI CASTG 1 cut(s) 118
XapI RAATTY 1 cut(s) 461
XmaI CCCGGG 1 cut(s) 369
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.