RchiOBHm_Chr1g0342801

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016915
Physical Location & Seq
Forward (+)
34597282 .. 34599489
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56941

Sequence Viewer

Length: 708 bp
ATGTCCTCGCATACGCCCATAGAAGAGCTTTTGCGTGTTGCGAAACGAGTTAACTATCCACAAATTAACTATCCACAAACTGATGCCAGTATAATCAGAACCCCCCCACCTGATGGCGAGTTCGTCGCTTCTGATCAAGTCTATAGGTCTTTCTCTAGGTGGTTCACTGAAACCAAAGGACGAAGGTTGCAACCATATTTGACCGAGCTGACAGATGCTCTCAAGGTGTATGACATTTCTTGCCAACTGACTGTGCAGCTTGACCAACACAGTGAGATGACATTCTCCACAAGCAACACAAACAGTGAAGCTAATGTTGCCAGGGCTAGGAAAGCTCTTGAATATTTGCAATTGATGCCATTTCTCTATACTCCTGTGGTGATAAAGTACATCAATGGAAGTTTTGCTGAAGACATCCCGATTGGGCATCAGGAAGGTGGGCTTTGCTCAACATATAGAATCGAATCAGAGCAATCTCTTGAGCGGAAGATACTCCTCGCTGGTTCTTTACGGGACCTTGAACGACTGACGGGATGTGATATTTGGCTGGGTGCGAACCGCGTTATTATTATCGGTACATTTGAAGGATCAAGGCTAGCAAGGGAGGTTGTGGAAGACTGCATCGTTCGTAATATGCCTCCTGCGCCCAAAATCAGAGACCTCATGACGAGTCTAGCATCGCAGGAATTCGAGACTCTGGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.62

Weight (kDa)

5.36

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_2nd PF21800 169 - 223 4.7e-08 KRR1 small subunit processome component, second KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 484
AccII CGCG 1 cut(s) 561
AciI CCGC 2 cut(s) 484, 559
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 1 cut(s) 686
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 2 cut(s) 389, 577
AfiI CCNNNNNNNGG 2 cut(s) 113, 327
AgsI TTSAA 3 cut(s) 341, 521, 584
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 5 cut(s) 28, 208, 259, 311, 335
AluI AGCT 5 cut(s) 28, 208, 259, 311, 335
Alw26I GTCTC 2 cut(s) 651, 686
AlwI GGATC 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 686
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 391
AsuNHI GCTAGC 1 cut(s) 595
AvaII GGWCC 1 cut(s) 514
BbsI GAAGAC 2 cut(s) 417, 621
BbvI GCAGC 1 cut(s) 268
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 322
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 651, 686
BfaI CTAG 4 cut(s) 156, 327, 596, 674
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 515
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 6 cut(s) 73, 205, 345, 436, 630, 686
BmtI GCTAGC 1 cut(s) 599
BpiI GAAGAC 2 cut(s) 417, 621
BpuEI CTTGAG 2 cut(s) 206, 500
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 327
Bse1I ACTGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 414, 539
BseLI CCNNNNNNNGG 2 cut(s) 113, 327
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 561
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 113, 327
BsmAI GTCTC 2 cut(s) 651, 686
BsmFI GGGAC 1 cut(s) 527
Bso31I GGTCTC 1 cut(s) 651
Bsp143I GATC 2 cut(s) 133, 587
BspACI CCGC 2 cut(s) 484, 559
BspFNI CGCG 1 cut(s) 561
BspHI TCATGA 1 cut(s) 663
BspLI GGNNCC 1 cut(s) 515
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 1 cut(s) 595
BspQI GCTCTTC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 651
BsrBI CCGCTC 1 cut(s) 484
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 2 cut(s) 133, 587
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 3 cut(s) 253, 272, 305
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 597
BstF5I GGATG 2 cut(s) 414, 539
BstFNI CGCG 1 cut(s) 561
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 2 cut(s) 136, 590
BstMAI GTCTC 2 cut(s) 651, 686
BstMBI GATC 2 cut(s) 133, 587
BstMWI GCNNNNNNNGC 4 cut(s) 317, 332, 355, 643
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 1 cut(s) 268
BstV2I GAAGAC 2 cut(s) 417, 621
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 414, 539
BtsIMutI CAGTG 3 cut(s) 165, 277, 310
Cac8I GCNNGC 1 cut(s) 597
CciI TCATGA 1 cut(s) 663
CfoI GCGC 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 514
Csp6I GTAC 2 cut(s) 388, 576
CviAII CATG 1 cut(s) 664
CviJI RGCY 9 cut(s) 28, 208, 259, 311, 326, 335, 442, 547, 595
CviKI_1 RGCY 9 cut(s) 28, 208, 259, 311, 326, 335, 442, 547, 595
CviQI GTAC 2 cut(s) 388, 576
DpnI GATC 2 cut(s) 135, 589
DpnII GATC 2 cut(s) 133, 587
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 320
FaeI CATG 1 cut(s) 667
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 1 cut(s) 527
FatI CATG 1 cut(s) 663
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 2 cut(s) 401, 546
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 4 cut(s) 156, 327, 596, 674
GlaI GCGC 1 cut(s) 645
GluI GCNGC 1 cut(s) 257
GsaI CCCAGC 1 cut(s) 551
HhaI GCGC 1 cut(s) 646
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 4 cut(s) 459, 464, 670, 694
HpaI GTTAAC 1 cut(s) 52
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 2 cut(s) 52, 165
Hpy188I TCNGA 4 cut(s) 98, 133, 469, 656
Hpy188III TCNNGA 6 cut(s) 338, 418, 431, 479, 664, 691
Hpy8I GTNNAC 2 cut(s) 52, 165
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 177, 428, 578
HpyCH4III ACNGT 3 cut(s) 253, 272, 305
HpyCH4V TGCA 4 cut(s) 190, 256, 349, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 332, 355, 643
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 1 cut(s) 644
Ksp22I TGATCA 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 133, 587
LguI GCTCTTC 1 cut(s) 18
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 6 cut(s) 73, 205, 345, 436, 630, 686
MaeI CTAG 4 cut(s) 156, 327, 596, 674
MalI GATC 2 cut(s) 135, 589
MbiI CCGCTC 1 cut(s) 484
MboI GATC 2 cut(s) 133, 587
MboII GAAGA 4 cut(s) 35, 422, 499, 626
MfeI CAATTG 1 cut(s) 350
MluCI AATT 3 cut(s) 63, 350, 686
MlyI GAGTC 2 cut(s) 679, 688
MnlI CCTC 5 cut(s) 16, 506, 598, 648, 671
MseI TTAA 2 cut(s) 51, 66
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 4 cut(s) 317, 332, 355, 643
NdeII GATC 2 cut(s) 133, 587
NheI GCTAGC 1 cut(s) 595
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 515
PagI TCATGA 1 cut(s) 663
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 459, 464
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 2 cut(s) 678, 688
PpsI GAGTC 2 cut(s) 678, 688
PpuMI RGGWCCY 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 515
PspPI GGNCC 1 cut(s) 514
PspPPI RGGWCCY 1 cut(s) 514
RsaI GTAC 2 cut(s) 389, 577
RsaNI GTAC 2 cut(s) 388, 576
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 51, 66
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 133, 587
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 679, 688
ScrFI CCNGG 1 cut(s) 322
SfaNI GCATC 6 cut(s) 73, 205, 345, 436, 630, 686
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 1 cut(s) 514
SmlI CTYRAG 2 cut(s) 221, 479
SmoI CTYRAG 2 cut(s) 221, 479
Sse9I AATT 3 cut(s) 63, 350, 686
SsiI CCGC 2 cut(s) 484, 559
SspI AATATT 1 cut(s) 344
SspMI CTAG 4 cut(s) 156, 327, 596, 674
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 3 cut(s) 253, 272, 305
TaqI TCGA 2 cut(s) 462, 690
TaqII GACCGA 1 cut(s) 218
TasI AATT 3 cut(s) 63, 350, 686
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 2 cut(s) 459, 464
Tru1I TTAA 2 cut(s) 51, 66
Tru9I TTAA 2 cut(s) 51, 66
TscAI CASTG 3 cut(s) 172, 277, 310
TseI GCWGC 1 cut(s) 256
TspRI CASTG 3 cut(s) 172, 277, 310
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 1 cut(s) 686
XspI CTAG 4 cut(s) 156, 327, 596, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.