Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0016915

Physical Location & Seq

Genomic Coordinates Reverse (-)

30780084 .. 30781307

Gene Structure 1224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG161500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACATTCTCCACAAGCAACACAAACAGTGAAGCTAATGTTGCCAGGGCTAGGAAAGCTCTTGAATATTTGCAATTGATGCCATTTCTCTATACTCCTATGGTGATAAAGTACATCAATGGAAGTTTTGCTGAAGACATCCCGATTGGGCATCAGGAAGGTGGGCTTTGCTCAACATATAGAATCGAATCAGAGCAATCTCTTGAGCGGAAGATACTCCTCGCTGGTTCTTTACGGGACCTTGAACGACTGACGGGATGTGATATTTGGCTGGGTGCGAACCGCGTTATTATTATCGGTACATTTGAAGGATCAAGGCTAGCAAGGGAGGTTGTGGAAGAGACTGCATCGTTCGTAATATGCCTCCAGCGCCCAAAATCAGAGACCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.56

Weight (kDa)

5.47

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08170 FvH4_7g08170
rosa_chinensis	RchiOBHm_Chr1g0342801
rosa_multiflora	Rmu_sc0000124.1_g000026 Rmu_sc0004202.1_g000001
rosa_roxburghii	Rroxscaffold_4G00294560
rosa_rugosa	Rorug01G0166000 Rorug01G0166100 Rorug01G0166200
rosa_samantha	Rh1AG161500 Rh1AG181900 Rh1BG130900 Rh1CG168700
rosa_wichuraiana	Rw1G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	1 cut(s)	285
AciI	CCGC	2 cut(s)	208, 283
AclWI	GGATC	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	113, 301
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	65, 245, 308
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	35, 59
AluI	AGCT	2 cut(s)	35, 59
Alw26I	GTCTC	2 cut(s)	335, 377
AlwI	GGATC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	115
AsuNHI	GCTAGC	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	335, 377
BfaI	CTAG	2 cut(s)	51, 320
BfoI	RGCGCY	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	3 cut(s)	69, 160, 356
BmtI	GCTAGC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	138, 263
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	209
BseYI	CCCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	335, 377
BsmFI	GGGAC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	311
BspACI	CCGC	2 cut(s)	208, 283
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	239
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	377
BsrBI	CCGCTC	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	138, 263
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	1 cut(s)	314
BstMAI	GTCTC	2 cut(s)	335, 377
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 56, 79, 369
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstUI	CGCG	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	138, 263
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	112, 300
CviJI	RGCY	6 cut(s)	35, 50, 59, 166, 271, 319
CviKI_1	RGCY	6 cut(s)	35, 50, 59, 166, 271, 319
CviQI	GTAC	2 cut(s)	112, 300
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	44
FaiI	YATR	6 cut(s)	93, 101, 178, 180, 361, 391
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	251
FokI	GGATG	2 cut(s)	125, 270
FspBI	CTAG	2 cut(s)	51, 320
GlaI	GCGC	1 cut(s)	371
GsaI	CCCAGC	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	373
HhaI	GCGC	1 cut(s)	372
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	183, 188
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	193, 382
Hpy188III	TCNNGA	4 cut(s)	62, 142, 155, 203
HpyAV	CCTTC	2 cut(s)	152, 302
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	73, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 56, 79, 369
HspAI	GCGC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	311
LpnPI	CCDG	6 cut(s)	31, 58, 140, 210, 257, 380
LweI	GCATC	3 cut(s)	69, 160, 356
MaeI	CTAG	2 cut(s)	51, 320
MalI	GATC	1 cut(s)	313
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	1 cut(s)	311
MboII	GAAGA	3 cut(s)	146, 223, 350
MfeI	CAATTG	1 cut(s)	74
MluCI	AATT	1 cut(s)	74
MnlI	CCTC	3 cut(s)	230, 322, 374
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	4 cut(s)	41, 56, 79, 369
NdeII	GATC	1 cut(s)	311
NheI	GCTAGC	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	183, 188
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
RsaI	GTAC	2 cut(s)	113, 301
RsaNI	GTAC	2 cut(s)	112, 300
Sau3AI	GATC	1 cut(s)	311
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	6 cut(s)	37, 61, 163, 243, 333, 389
SfaNI	GCATC	3 cut(s)	69, 160, 356
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	208, 283
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	2 cut(s)	51, 320
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	74
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	183, 188
TscAI	CASTG	1 cut(s)	34
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	238
XspI	CTAG	2 cut(s)	51, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.