Rorug01G0166000

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016915
Physical Location & Seq
Reverse (-)
22643532 .. 22644974
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0166000.1

Sequence Viewer

Length: 396 bp
ATGGCGTACTCAAAGACTATTCTTCTTGTTGTCTTTGCCGTTCTCCTCATCACTGCTGAGGTCTCAGCTCATCGTGACCTAACTGAGACAACCACTCCAACTACTGATGGTAGCGAGGCATACAATAGAGGAGGCAATGGAGGAAATGGAGGAGGCAAGGGAGGAAATGGAGGATACGGAGGAGGAAGCAATGCAGGAAACGGAGGAGGCAAGGGAGGCAATGGAGGAGGCAAGGGAGGAAATGGCGGCAATGGAGGAAAGGAAGGAAAGGGAGGGGGCGGGCATGCAGGGGCGGATCCAAGGGGTGGCGAGGTTTGGCAGCTGCCCAACCTCGATTCTTTTACCAAGCCATGGAAGCTTTTGTGCTTTGAAGGTTTTACAGAAAAAAAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

12.84

Weight (kDa)

8.73

Isoelectric Point (pI)

12.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 305, 351
AciI CCGC 3 cut(s) 246, 279, 293
AclWI GGATC 2 cut(s) 290, 303
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 305, 351
AgsI TTSAA 1 cut(s) 371
AluBI AGCT 3 cut(s) 68, 322, 358
AluI AGCT 3 cut(s) 68, 322, 358
Alw26I GTCTC 2 cut(s) 67, 80
AlwI GGATC 2 cut(s) 290, 303
ApeKI GCWGC 2 cut(s) 319, 322
BamHI GGATCC 1 cut(s) 295
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 309, 331
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 23
BciVI GTATCC 1 cut(s) 167
BcoDI GTCTC 2 cut(s) 67, 80
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 3 cut(s) 247, 320, 323
BlsI GCNGC 3 cut(s) 248, 321, 324
BmiI GGNNCC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 299, 350
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 351
Bse3DI GCAATG 4 cut(s) 142, 196, 226, 256
BseDI CCNNGG 2 cut(s) 299, 350
BseLI CCNNNNNNNGG 2 cut(s) 305, 351
BseMI GCAATG 4 cut(s) 142, 196, 226, 256
BseMII CTCAG 3 cut(s) 48, 75, 78
BseRI GAGGAG 6 cut(s) 35, 144, 165, 195, 219, 240
BseXI GCAGC 2 cut(s) 309, 331
BslI CCNNNNNNNGG 2 cut(s) 305, 351
BsmAI GTCTC 2 cut(s) 67, 80
Bso31I GGTCTC 1 cut(s) 67
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 3 cut(s) 246, 279, 293
BspCNI CTCAG 3 cut(s) 49, 76, 77
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 2 cut(s) 290, 303
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 4 cut(s) 142, 196, 226, 256
BssECI CCNNGG 2 cut(s) 299, 350
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 2 cut(s) 299, 350
BstC8I GCNNGC 2 cut(s) 281, 285
BstDEI CTNAG 3 cut(s) 57, 64, 84
BstDSI CCRYGG 1 cut(s) 350
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 2 cut(s) 67, 80
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 216, 355
BstNSI RCATGY 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 309, 331
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuI GTATCC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 350
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 281, 285
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 284, 351
CviJI RGCY 4 cut(s) 68, 322, 349, 358
CviKI_1 RGCY 4 cut(s) 68, 322, 349, 358
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 3 cut(s) 57, 64, 84
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 299, 350
Eco31I GGTCTC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 299, 350
ErhI CCWWGG 2 cut(s) 299, 350
FaeI CATG 2 cut(s) 287, 354
FaiI YATR 4 cut(s) 121, 285, 352, 394
FatI CATG 2 cut(s) 283, 350
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 3 cut(s) 247, 320, 323
Fsp4HI GCNGC 3 cut(s) 247, 320, 323
GluI GCNGC 3 cut(s) 247, 320, 323
Hin1II CATG 2 cut(s) 287, 354
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 335
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 257, 365
HpyCH4V TGCA 2 cut(s) 194, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 355
HpyF3I CTNAG 3 cut(s) 57, 64, 84
Hsp92II CATG 2 cut(s) 287, 354
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 2 cut(s) 180, 273
Lsp1109I GCAGC 2 cut(s) 309, 331
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 14
MflI RGATCY 1 cut(s) 295
MluCI AATT 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 216, 355
NcoI CCATGG 1 cut(s) 350
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 287, 354
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 287
PaeI GCATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 335
PflMI CCANNNNNTGG 2 cut(s) 305, 351
PkrI GCNGC 3 cut(s) 248, 321, 324
PspN4I GGNNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 3 cut(s) 247, 320, 323
Sau3AI GATC 1 cut(s) 295
SetI ASST 8 cut(s) 63, 70, 81, 315, 324, 333, 360, 376
SphI GCATGC 1 cut(s) 287
Sse9I AATT 1 cut(s) 389
SsiI CCGC 3 cut(s) 246, 279, 293
StyI CCWWGG 2 cut(s) 299, 350
TaqI TCGA 1 cut(s) 333
TasI AATT 1 cut(s) 389
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 319, 322
Tsp45I GTSAC 1 cut(s) 74
TspGWI ACGGA 2 cut(s) 192, 216
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 2 cut(s) 305, 351
XceI RCATGY 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.