Rorug01G0166100

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016915
Physical Location & Seq
Reverse (-)
22650994 .. 22651709
716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0166100.1

Sequence Viewer

Length: 237 bp
ATGGCATTCTCAAAGACTTTTCTTCTTGTCGCCCTTGCCTTTGCTGTTCTCCTCATCTCTGCTGAGGTCTCGGCTCATCGTGACCTAGCTGAGGCTACCACTACTACTCAAAAAGCCAACACTGACGGTTACCAAGGAAACGATCATAGACGTCGCTGCTATGGACATGGAGGACATCACTGCTATGGAGGCGGAGGACATGGACCTCATGCTGTTGAGACTGAAACTGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

78

Amino Acids

8.35

Weight (kDa)

6.35

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRP PF07172 1 - 68 5.4e-09 Glycine rich protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 154
AciI CCGC 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 73, 212
ApeKI GCWGC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BbvCI CCTCAGC 2 cut(s) 63, 90
BbvI GCAGC 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 73, 212
BfaI CTAG 2 cut(s) 86, 235
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
Bpu10I CCTNAGC 2 cut(s) 63, 90
BsaHI GRCGYC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 3 cut(s) 54, 81, 219
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 2 cut(s) 73, 212
BsmI GAATGC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 192
BspCNI CTCAG 3 cut(s) 55, 82, 220
BspTNI GGTCTC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 151
BstDEI CTNAG 3 cut(s) 63, 90, 228
BstEII GGTNACC 1 cut(s) 128
BstENI CCTNNNNNAGG 1 cut(s) 89
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 2 cut(s) 73, 212
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstPI GGTNACC 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 120, 178
Cfr13I GGNCC 1 cut(s) 203
CviAII CATG 3 cut(s) 167, 200, 209
CviJI RGCY 4 cut(s) 74, 89, 95, 116
CviKI_1 RGCY 4 cut(s) 74, 89, 95, 116
DdeI CTNAG 3 cut(s) 63, 90, 228
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 170, 203, 212
FaiI YATR 6 cut(s) 147, 162, 168, 186, 201, 210
FatI CATG 3 cut(s) 166, 199, 208
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 2 cut(s) 86, 235
GluI GCNGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 3 cut(s) 170, 203, 212
Hpy188III TCNNGA 1 cut(s) 80
Hpy99I CGWCG 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 3 cut(s) 63, 90, 228
HpySE526I ACGT 1 cut(s) 151
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 3 cut(s) 170, 203, 212
Kzo9I GATC 1 cut(s) 142
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 2 cut(s) 86, 235
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 80, 128
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 14
MnlI CCTC 7 cut(s) 58, 62, 85, 164, 182, 188, 216
MslI CAYNNNNRTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 189
NdeII GATC 1 cut(s) 142
NlaIII CATG 3 cut(s) 170, 203, 212
NmeAIII GCCGAG 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 80
PctI GAATGC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 158
PspEI GGTNACC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 183
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 203
SetI ASST 5 cut(s) 69, 87, 91, 154, 208
SgeI CNNG 9 cut(s) 38, 47, 82, 92, 98, 146, 179, 212, 221
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 183
SsiI CCGC 1 cut(s) 192
SspMI CTAG 2 cut(s) 86, 235
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 154
TscAI CASTG 2 cut(s) 127, 185
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 80
TspRI CASTG 2 cut(s) 127, 185
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 89
XspI CTAG 2 cut(s) 86, 235
ZraI GACGTC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.