Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009548

Physical Location & Seq

Genomic Coordinates Forward (+)

9585985 .. 9592588

Gene Structure 6604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10160.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCGAAGGCAGTTGCTGATTGGCAGAGCAACAAGGAAGCTGTTCAGGCCACTAACGACGACGCATCTGCCAGCAAACTGTCCTGCGTGAAAAAGGGTTACATAAAAGACGATTATGTCCATTTGTTTGTGAGGAGACCTGTCAGAAGATCACCCATTATTAACCGCGGTTACTTTGCCCGCTGGGCTGCGTTTCGCCAGCTTTTGAATCAGTTTCTTGACACTGAAGTCGGCGAAAAGGGTGAGCTGAAGAAGCAGATATTGTCACTTGGAGCTGGGTTTGATACCACTTATTTCCAGTTGCAGGATGAAGGCAGGGCACCATATTTATATGTGGAGTTGGATTTTAAGGAGGTTACTAGAAAGAAGGCAACAATTATTGAAACCTGCAGTCAAATGAGGGACAAAATTAGTGCAACAGCATCAATCTCACAAGAGAGAGGAGAAGTGCTCAGTGACCACTATAAGCTACTTCCAGTTGATTTACGCGATATACATCAATTAAACGAGGTCATTGCTTTGGCTGGTATGGATCCTAGCCTGCCAACTTTTATAATTGCAGAATGCGTTTTGATATACATTGATCCAGAATCCAGTCGTGCCATAGTTGGCTGGGCATCGAAAACATTTTCAACTGCCATTTTTTTCTTATATGAGCAGATTCATCCAGATGATGCTTTTGGGCACCAGATGATCAGAAACTTGGAGAGTCGAGGTTGTGCACTCTTGGGAATACATGATACGCCAACATTGCTGGCAAAGGAAGGACTTTTTCTTGATCAAGGATGGCAGAGAGCTCTTGCCTGGGACATGCTGAAAGTATATAGTACTTTTGTTGACGCTCAAGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGCACATGATGCAGGCAAGTCAACTCCTCCTTTCTGTTGTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0016740 GO:0016741 GO:0023051 GO:0023057 GO:0032259 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCM

Protein Analysis

314

Amino Acids

35.85

Weight (kDa)

5.73

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LCM	PF04072	47 - 204	1.1e-20	Leucine carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02100 AT1G02100 AT1G02100
fragaria_vesca	FvH4_7g10160 FvH4_7g10160 FvH4_7g10160 FvH4_7g10160
malus_domestica	MD02G1211800.v1.1 MD07G1108400.v1.1
prunus_persica	Prupe.2G131200_v2.0.a1
pyrus_communis	pycom02g17670 pycom07g09300
rosa_chinensis	RchiOBHm_Chr1g0347871
rosa_laevigata	RLG00000028707
rosa_multiflora	Rmu_ssc0000342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00307410
rosa_rugosa	Rorug01G0190300
rosa_samantha	Rh1AG208400 Rh1BG172900 Rh1CG192700 Rh1DG202800
rosa_wichuraiana	Rw1G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AasI	GACNNNNNNGTC	2 cut(s)	116, 227
Acc36I	ACCTGC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	319, 684
AccII	CGCG	2 cut(s)	168, 489
AciI	CCGC	3 cut(s)	166, 168, 181
AclWI	GGATC	3 cut(s)	527, 540, 578
AcsI	RAATTY	1 cut(s)	884
AcuI	CTGAAG	2 cut(s)	246, 269
AfaI	GTAC	1 cut(s)	829
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	5 cut(s)	208, 383, 633, 863, 890
AjnI	CCWGG	1 cut(s)	803
AluBI	AGCT	6 cut(s)	41, 202, 247, 275, 469, 797
AluI	AGCT	6 cut(s)	41, 202, 247, 275, 469, 797
Alw21I	GWGCWC	3 cut(s)	453, 724, 799
Alw26I	GTCTC	1 cut(s)	130
Alw44I	GTGCAC	1 cut(s)	720
AlwI	GGATC	3 cut(s)	527, 540, 578
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	720
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	884
Asp700I	GAANNNNTTC	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	144, 254
BaeGI	GKGCMC	3 cut(s)	322, 687, 724
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	2 cut(s)	319, 684
BanII	GRGCYC	1 cut(s)	799
Bbv12I	GWGCWC	3 cut(s)	453, 724, 799
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	780
BcgI	CGANNNNNNTGC	4 cut(s)	50, 84, 497, 531
BciT130I	CCWGG	1 cut(s)	805
BclI	TGATCA	2 cut(s)	693, 778
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	360, 537
BfmI	CTRYAG	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmcAI	AGTACT	1 cut(s)	829
Bme1390I	CCNGG	1 cut(s)	805
BmiI	GGNNCC	3 cut(s)	321, 534, 686
BmrFI	CCNGG	1 cut(s)	805
BmsI	GCATC	5 cut(s)	74, 431, 626, 664, 894
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpuEI	CTTGAG	1 cut(s)	828
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	166, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	3 cut(s)	298, 476, 594
Bse3DI	GCAATG	2 cut(s)	513, 749
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	805
BseDI	CCNNGG	2 cut(s)	166, 804
BseGI	GGATG	3 cut(s)	313, 664, 791
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	513, 749
BseMII	CTCAG	1 cut(s)	466
BseNI	ACTGG	3 cut(s)	298, 476, 594
BseRI	GAGGAG	3 cut(s)	148, 456, 911
BseSI	GKGCMC	3 cut(s)	322, 687, 724
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	3 cut(s)	183, 275, 612
Bsh1236I	CGCG	2 cut(s)	168, 489
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	2 cut(s)	319, 684
BsiHKAI	GWGCWC	3 cut(s)	453, 724, 799
BslFI	GGGAC	2 cut(s)	416, 821
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	416, 821
BsmI	GAATGC	1 cut(s)	569
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	5 cut(s)	322, 453, 687, 724, 799
Bsp143I	GATC	5 cut(s)	149, 532, 583, 693, 778
BspACI	CCGC	3 cut(s)	166, 168, 181
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	465
BspFNI	CGCG	2 cut(s)	168, 489
BspLI	GGNNCC	3 cut(s)	321, 534, 686
BspMAI	CTGCAG	1 cut(s)	392
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	3 cut(s)	527, 540, 578
BspT107I	GGYRCC	2 cut(s)	319, 684
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	513, 749
BsrI	ACTGG	3 cut(s)	298, 476, 594
BssECI	CCNNGG	2 cut(s)	166, 804
BssMI	GATC	5 cut(s)	149, 532, 583, 693, 778
Bst2UI	CCWGG	1 cut(s)	805
Bst4CI	ACNGT	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	904
BstC8I	GCNNGC	6 cut(s)	73, 181, 200, 542, 756, 909
BstDEI	CTNAG	1 cut(s)	452
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	313, 664, 791
BstFNI	CGCG	2 cut(s)	168, 489
BstKTI	GATC	5 cut(s)	152, 535, 586, 696, 781
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	5 cut(s)	149, 532, 583, 693, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 185, 253, 751, 904
BstNI	CCWGG	1 cut(s)	805
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	803
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	3 cut(s)	322, 687, 724
BstUI	CGCG	2 cut(s)	168, 489
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	313, 664, 791
BtsIMutI	CAGTG	2 cut(s)	222, 460
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	6 cut(s)	73, 181, 200, 542, 756, 909
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr42I	CCGCGG	1 cut(s)	169
CseI	GACGC	3 cut(s)	71, 848, 861
Csp6I	GTAC	1 cut(s)	828
CviAII	CATG	3 cut(s)	737, 811, 901
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	5 cut(s)	151, 534, 585, 695, 780
DpnII	GATC	5 cut(s)	149, 532, 583, 693, 778
DrdI	GACNNNNNNGTC	2 cut(s)	116, 227
DseDI	GACNNNNNNGTC	2 cut(s)	116, 227
Ecl136II	GAGCTC	1 cut(s)	797
Eco24I	GRGCYC	1 cut(s)	799
Eco31I	GGTCTC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	797
Eco57I	CTGAAG	2 cut(s)	246, 269
EcoICRI	GAGCTC	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	803
EcoT38I	GRGCYC	1 cut(s)	799
FaeI	CATG	3 cut(s)	740, 814, 904
FaqI	GGGAC	2 cut(s)	416, 821
FatI	CATG	3 cut(s)	736, 810, 900
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	2 cut(s)	693, 778
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	3 cut(s)	320, 651, 798
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	360, 537
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	3 cut(s)	187, 279, 616
HaeIII	GGCC	1 cut(s)	50
HgaI	GACGC	3 cut(s)	71, 848, 861
Hin1II	CATG	3 cut(s)	740, 814, 904
HincII	GTYRAC	2 cut(s)	838, 917
HindII	GTYRAC	2 cut(s)	838, 917
HinfI	GANTC	4 cut(s)	208, 590, 661, 709
HphI	GGTGA	2 cut(s)	144, 254
Hpy166II	GTNNAC	3 cut(s)	722, 838, 917
Hpy188I	TCNGA	2 cut(s)	146, 698
Hpy188III	TCNNGA	5 cut(s)	218, 587, 668, 776, 845
Hpy8I	GTNNAC	3 cut(s)	722, 838, 917
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	3 cut(s)	305, 361, 758
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	6 cut(s)	304, 390, 416, 560, 722, 907
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 185, 253, 751, 904
HpyF3I	CTNAG	1 cut(s)	452
Hsp92II	CATG	3 cut(s)	740, 814, 904
Ksp22I	TGATCA	2 cut(s)	693, 778
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	149, 532, 583, 693, 778
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	5 cut(s)	74, 431, 626, 664, 894
MaeI	CTAG	2 cut(s)	360, 537
MaeIII	GTNAC	5 cut(s)	98, 170, 264, 355, 455
MalI	GATC	5 cut(s)	151, 534, 585, 695, 780
MboI	GATC	5 cut(s)	149, 532, 583, 693, 778
MboII	GAAGA	3 cut(s)	159, 262, 902
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	5 cut(s)	322, 453, 687, 724, 799
MluCI	AATT	6 cut(s)	375, 408, 500, 555, 872, 884
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	7 cut(s)	126, 346, 393, 434, 502, 707, 932
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	3 cut(s)	162, 348, 503
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	168, 183
MspR9I	CCNGG	1 cut(s)	805
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	805
MvnI	CGCG	2 cut(s)	168, 489
MwoI	GCNNNNNNNGC	5 cut(s)	47, 185, 253, 751, 904
NdeII	GATC	5 cut(s)	149, 532, 583, 693, 778
NlaIII	CATG	3 cut(s)	740, 814, 904
NlaIV	GGNNCC	3 cut(s)	321, 534, 686
NmuCI	GTSAC	2 cut(s)	264, 455
NspI	RCATGY	1 cut(s)	814
PctI	GAATGC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	208, 590, 661
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	717
PsiI	TTATAA	1 cut(s)	554
Psp124BI	GAGCTC	1 cut(s)	799
Psp6I	CCWGG	1 cut(s)	803
PspFI	CCCAGC	3 cut(s)	183, 275, 612
PspGI	CCWGG	1 cut(s)	803
PspN4I	GGNNCC	3 cut(s)	321, 534, 686
PstI	CTGCAG	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	1 cut(s)	799
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	162, 348, 503
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	5 cut(s)	149, 532, 583, 693, 778
ScaI	AGTACT	1 cut(s)	829
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	1 cut(s)	805
SduI	GDGCHC	5 cut(s)	322, 453, 687, 724, 799
SfaNI	GCATC	5 cut(s)	74, 431, 626, 664, 894
SfcI	CTRYAG	1 cut(s)	388
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	843
SmoI	CTYRAG	1 cut(s)	843
Sse9I	AATT	6 cut(s)	375, 408, 500, 555, 872, 884
SsiI	CCGC	3 cut(s)	166, 168, 181
SspMI	CTAG	2 cut(s)	360, 537
SstI	GAGCTC	1 cut(s)	799
StyD4I	CCNGG	1 cut(s)	803
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	620, 712
TasI	AATT	6 cut(s)	375, 408, 500, 555, 872, 884
TatI	WGTACW	1 cut(s)	827
TfiI	GAWTC	3 cut(s)	208, 590, 661
Tru1I	TTAA	3 cut(s)	162, 348, 503
Tru9I	TTAA	3 cut(s)	162, 348, 503
TscAI	CASTG	2 cut(s)	229, 460
TseFI	GTSAC	2 cut(s)	264, 455
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	2 cut(s)	264, 455
TspDTI	ATGAA	3 cut(s)	324, 653, 897
TspRI	CASTG	2 cut(s)	229, 460
VneI	GTGCAC	1 cut(s)	720
XapI	RAATTY	1 cut(s)	884
XceI	RCATGY	1 cut(s)	814
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	360, 537
ZrmI	AGTACT	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.