Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009548

Physical Location & Seq

Genomic Coordinates Forward (+)

18946343 .. 18952465

Gene Structure 6123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCGAAGCCAGTGTCTGATTCACACAGCAACAGAGAAGCAGTTCAAGCAACAAACGACGACGCCTCTGCCAGCAAACTGTCCTGCGTGAAGAAAGGGTACATGAAAGACGATTATGTCCATTTGTTTGTAAGAAGACCTGTGAGAAGATCTCCGATTATTAACCGTGGTTACTTTGCTCGTTGGGCTGCTCTTCGCAAGCTCCTGAATCAGTTTCTTGATACTGAAAAAATTGGGGGTGAAAAGGGTCATTTGAAGAAGCAGGTTTTATCACTTGGAGCTGGCTTTGATACAACATATTTTCAGCTGCAGGATGAGGGGAAAGCACCCCATTTATATGTGGAGCTGGATTTTAAGGAGGTGACTAGTAAGAAGACCACACTTATTGAAACCTGCAGTCATTTGAAGGACAAAATTAGTGCAACAGCTTCAATCTCTCGAGAGAAAGGAGAAGTGCTCAGTGACCACTATAAGCTACTCCCCATAGATTTGCGCAACATACAACAATTAGACGATGTTATAGCTTTGGCTGGTATGGATCGCAGCCTTCCAACTTTTATAATTGCAGAATGCGTTTTGATATACTTGGATCCAGATTCAAGTCGTGCCATAGTTGGCTGGACATCAAAAGCATTTTCAACGGCAATATTTTTCTTATATGAGCAGATTCATCCAGATGATGCTTTTGGGCAGCAGATGATTAGAAACTTGGAGAGTCGAGGCTGTGCACTCTTGGGCATACATGATACACCGACATTACAGGCAAAGGAAAATCTTTTTCTTGACCAAGGATGGCAGAGGGCTGTTGCCTGGGACATGCTAAAAGTATATAGTAATTTTGTTGAAGCTCAAGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGTATATGATGCAGGAGCACTACTGTGTGGCTTATGCAATCAATGATGCCATGGGTCTGTTTGAGGATTTTGGTTTTCCTAACAACCAGCAGAAGCAGCAGCAGCACATGCAGAACGTGCCCAACCCCTCATCCTCATCATCCTCATCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0016740 GO:0016741 GO:0023051 GO:0023057 GO:0032259 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCM

Protein Analysis

352

Amino Acids

40.16

Weight (kDa)

5.96

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02100 AT1G02100 AT1G02100
fragaria_vesca	FvH4_7g10160 FvH4_7g10160 FvH4_7g10160 FvH4_7g10160
malus_domestica	MD02G1211800.v1.1 MD07G1108400.v1.1
prunus_persica	Prupe.2G131200_v2.0.a1
pyrus_communis	pycom02g17670 pycom07g09300
rosa_chinensis	RchiOBHm_Chr1g0347871
rosa_laevigata	RLG00000028707
rosa_multiflora	Rmu_ssc0000342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00307410
rosa_rugosa	Rorug01G0190300
rosa_samantha	Rh1AG208400 Rh1BG172900 Rh1CG192700 Rh1DG202800
rosa_wichuraiana	Rw1G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
AasI	GACNNNNNNGTC	1 cut(s)	116
Acc16I	TGCGCA	1 cut(s)	494
Acc36I	ACCTGC	2 cut(s)	253, 401
AclWI	GGATC	3 cut(s)	546, 584, 597
AcsI	RAATTY	1 cut(s)	890
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	101
AhlI	ACTAGT	1 cut(s)	365
AjnI	CCWGG	1 cut(s)	809
AleI	CACNNNNGTG	1 cut(s)	924
AluBI	AGCT	8 cut(s)	202, 281, 307, 346, 428, 475, 524, 848
AluI	AGCT	8 cut(s)	202, 281, 307, 346, 428, 475, 524, 848
Alw21I	GWGCWC	3 cut(s)	459, 730, 921
Alw44I	GTGCAC	1 cut(s)	726
AlwI	GGATC	3 cut(s)	546, 584, 597
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	438
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	7 cut(s)	188, 307, 543, 691, 997, 1000, 1003
ApoI	RAATTY	1 cut(s)	890
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	251, 373
AvaI	CYCGRG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	730, 1023
BamHI	GGATCC	1 cut(s)	589
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbsI	GAAGAC	2 cut(s)	142, 380
Bbv12I	GWGCWC	3 cut(s)	459, 730, 921
BbvI	GCAGC	7 cut(s)	175, 294, 555, 703, 1009, 1012, 1015
BccI	CCATC	1 cut(s)	786
BceAI	ACGGC	1 cut(s)	657
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BciT130I	CCWGG	1 cut(s)	811
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	2 cut(s)	308, 394
BfuAI	ACCTGC	2 cut(s)	253, 401
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	7 cut(s)	189, 308, 544, 692, 998, 1001, 1004
BlsI	GCNGC	7 cut(s)	190, 309, 545, 693, 999, 1002, 1005
Bme1390I	CCNGG	1 cut(s)	811
BmeT110I	CYCGRG	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	3 cut(s)	670, 900, 937
BpiI	GAAGAC	2 cut(s)	142, 380
BplI	GAGNNNNNCTC	4 cut(s)	136, 168, 441, 473
BpuEI	CTTGAG	1 cut(s)	834
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	4 cut(s)	166, 787, 810, 951
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	4 cut(s)	166, 787, 810, 951
BseGI	GGATG	5 cut(s)	319, 670, 797, 1031, 1040
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	1 cut(s)	11
BseSI	GKGCMC	2 cut(s)	730, 1023
BseXI	GCAGC	7 cut(s)	175, 294, 555, 703, 1009, 1012, 1015
BsiHKAI	GWGCWC	3 cut(s)	459, 730, 921
BsiHKCI	CYCGRG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	827
BsmI	GAATGC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	438
Bsp1286I	GDGCHC	4 cut(s)	459, 730, 921, 1023
Bsp143I	GATC	3 cut(s)	149, 538, 589
Bsp19I	CCATGG	1 cut(s)	951
BspCNI	CTCAG	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	2 cut(s)	312, 398
BspMI	ACCTGC	2 cut(s)	253, 401
BspPI	GGATC	3 cut(s)	546, 584, 597
BspQI	GCTCTTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	4 cut(s)	166, 787, 810, 951
BssMI	GATC	3 cut(s)	149, 538, 589
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	787, 951
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	3 cut(s)	81, 167, 926
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	2 cut(s)	1009, 1018
BstC8I	GCNNGC	3 cut(s)	73, 200, 283
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	2 cut(s)	166, 951
BstF5I	GGATG	5 cut(s)	319, 670, 797, 1031, 1040
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	152, 541, 592
BstMBI	GATC	3 cut(s)	149, 538, 589
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 185, 997, 1003, 1009, 1018
BstNI	CCWGG	1 cut(s)	811
BstNSI	RCATGY	2 cut(s)	820, 1012
BstSCI	CCNGG	1 cut(s)	809
BstSFI	CTRYAG	2 cut(s)	308, 394
BstSLI	GKGCMC	2 cut(s)	730, 1023
BstV1I	GCAGC	7 cut(s)	175, 294, 555, 703, 1009, 1012, 1015
BstV2I	GAAGAC	2 cut(s)	142, 380
BstX2I	RGATCY	2 cut(s)	149, 589
BstYI	RGATCY	2 cut(s)	149, 589
BtgI	CCRYGG	2 cut(s)	166, 951
BtsCI	GGATG	5 cut(s)	319, 670, 797, 1031, 1040
BtsIMutI	CAGTG	2 cut(s)	18, 466
BveI	ACCTGC	2 cut(s)	253, 401
Cac8I	GCNNGC	3 cut(s)	73, 200, 283
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	495
CseI	GACGC	2 cut(s)	71, 867
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	5 cut(s)	103, 743, 817, 952, 1009
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	3 cut(s)	151, 540, 591
DpnII	GATC	3 cut(s)	149, 538, 589
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	787, 951
Eco88I	CYCGRG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	809
EcoT14I	CCWWGG	2 cut(s)	787, 951
ErhI	CCWWGG	2 cut(s)	787, 951
FaeI	CATG	5 cut(s)	106, 746, 820, 955, 1012
FaqI	GGGAC	1 cut(s)	827
FatI	CATG	5 cut(s)	102, 742, 816, 951, 1008
Fnu4HI	GCNGC	7 cut(s)	189, 308, 544, 692, 998, 1001, 1004
FokI	GGATG	5 cut(s)	326, 657, 804, 1018, 1027
Fsp4HI	GCNGC	7 cut(s)	189, 308, 544, 692, 998, 1001, 1004
FspBI	CTAG	1 cut(s)	366
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	7 cut(s)	189, 308, 544, 692, 998, 1001, 1004
HgaI	GACGC	2 cut(s)	71, 867
HhaI	GCGC	1 cut(s)	495
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	106, 746, 820, 955, 1012
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	5 cut(s)	20, 208, 596, 667, 715
HphI	GGTGA	2 cut(s)	251, 373
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	2 cut(s)	19, 156
Hpy188III	TCNNGA	8 cut(s)	205, 218, 438, 440, 593, 674, 782, 851
Hpy8I	GTNNAC	1 cut(s)	728
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	2 cut(s)	400, 557
HpyCH4III	ACNGT	3 cut(s)	81, 167, 926
HpyCH4IV	ACGT	1 cut(s)	1017
HpyCH4V	TGCA	8 cut(s)	310, 396, 422, 566, 728, 913, 938, 1012
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 185, 997, 1003, 1009, 1018
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	1017
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	106, 746, 820, 955, 1012
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	149, 538, 589
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	4 cut(s)	207, 278, 343, 916
Lsp1109I	GCAGC	7 cut(s)	175, 294, 555, 703, 1009, 1012, 1015
LweI	GCATC	3 cut(s)	670, 900, 937
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	1 cut(s)	1017
MaeIII	GTNAC	3 cut(s)	170, 361, 461
MalI	GATC	3 cut(s)	151, 540, 591
MboI	GATC	3 cut(s)	149, 538, 589
MboII	GAAGA	7 cut(s)	103, 147, 159, 185, 268, 385, 908
MflI	RGATCY	2 cut(s)	149, 589
MhlI	GDGCHC	4 cut(s)	459, 730, 921, 1023
MluCI	AATT	7 cut(s)	231, 414, 506, 561, 835, 878, 890
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	1 cut(s)	575
MnlI	CCTC	9 cut(s)	76, 310, 352, 713, 792, 958, 1039, 1045, 1054
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	2 cut(s)	162, 354
MslI	CAYNNNNRTG	3 cut(s)	336, 675, 924
MspA1I	CMGCKG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	811
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	811
MwoI	GCNNNNNNNGC	6 cut(s)	47, 185, 997, 1003, 1009, 1018
NcoI	CCATGG	1 cut(s)	951
NdeII	GATC	3 cut(s)	149, 538, 589
NlaIII	CATG	5 cut(s)	106, 746, 820, 955, 1012
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	361, 461
NsbI	TGCGCA	1 cut(s)	494
NspI	RCATGY	2 cut(s)	820, 1012
OliI	CACNNNNGTG	1 cut(s)	924
PaeR7I	CTCGAG	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	198
PctI	GAATGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	4 cut(s)	20, 208, 596, 667
PkrI	GCNGC	7 cut(s)	190, 309, 545, 693, 999, 1002, 1005
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
PsiI	TTATAA	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	809
PspN4I	GGNNCC	1 cut(s)	591
PstI	CTGCAG	2 cut(s)	312, 398
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	2 cut(s)	149, 589
PvuII	CAGCTG	1 cut(s)	307
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	3 cut(s)	336, 675, 924
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	162, 354
SatI	GCNGC	7 cut(s)	189, 308, 544, 692, 998, 1001, 1004
Sau3AI	GATC	3 cut(s)	149, 538, 589
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	4 cut(s)	459, 730, 921, 1023
SfaNI	GCATC	3 cut(s)	670, 900, 937
SfcI	CTRYAG	2 cut(s)	308, 394
Sfr274I	CTCGAG	1 cut(s)	438
SlaI	CTCGAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	3 cut(s)	336, 675, 924
SmlI	CTYRAG	2 cut(s)	438, 849
SmoI	CTYRAG	2 cut(s)	438, 849
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	7 cut(s)	231, 414, 506, 561, 835, 878, 890
SspI	AATATT	1 cut(s)	648
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	809
StyI	CCWWGG	2 cut(s)	787, 951
TaaI	ACNGT	3 cut(s)	81, 167, 926
TaiI	ACGT	1 cut(s)	1020
TaqI	TCGA	2 cut(s)	439, 718
TasI	AATT	7 cut(s)	231, 414, 506, 561, 835, 878, 890
TfiI	GAWTC	4 cut(s)	20, 208, 596, 667
Tru1I	TTAA	2 cut(s)	162, 354
Tru9I	TTAA	2 cut(s)	162, 354
TscAI	CASTG	2 cut(s)	18, 466
TseFI	GTSAC	2 cut(s)	361, 461
TseI	GCWGC	7 cut(s)	188, 307, 543, 691, 997, 1000, 1003
Tsp45I	GTSAC	2 cut(s)	361, 461
TspDTI	ATGAA	3 cut(s)	119, 659, 903
TspRI	CASTG	2 cut(s)	18, 466
VneI	GTGCAC	1 cut(s)	726
XapI	RAATTY	1 cut(s)	890
XceI	RCATGY	2 cut(s)	820, 1012
XhoI	CTCGAG	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.