Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009548

Physical Location & Seq

Genomic Coordinates Forward (+)

8552671 .. 8558419

Gene Structure 5749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09300.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTCGCGCAGCAACAAAGAAGCAGTTCAAGCAACAAACGACGACGCTTCGGCCAGCAAACTGTCGTGCGTGAAGAAAGGGTACATGAAAGACGATTATGTCCATTTGTTTGTGAGAAGACCTGTGAGAAGATCTCCGATTATTAACCGCGGTTACTTTGCTCGTTGGGCTGCTCTGCGGAAGCTTTTGAATCAGTTTCTTGATACCGAAGGAAATGCGGGTGAAAAGGGTCATTTGAAGAAGCAGATATTATCACTTGGAGCTGGCTTTGATACAACATATTTTCAGCTGCAGGATGAGGGGAAAGCACCATATTTGTATGTTGAGCTGGATTTTAAGGAGGTAACTAGTAAGAAGGCCACGCTTATTGAAACGTGCAGTCATTTGAGGGACAAAATTAGTGCGACAGCATCAATCTCTCGAGAGAGTGGAGAAGTGCTCAGTGACCACTACAAGCTACTTCCTGTTGATTTGCGTGACATACCAAAATTAGCCGATGTTATAACTTTAGCTGGTATGGATCCGAGCCTTCCAACTTTTATAATTGCAGAATGCGTTTTGATATACTTGGATCCAGATTCAAGTCGTTCCATAGTTAGATGGACATCAAAAACATTTTCAACGGCGATATTTTTCTTATATGAGCAGATTCATCCAGATGATGCTTTTGGGCAGCAGATGATCGATCATCAAGAAACTTGGAGAGTCGAGGCTGTGCACTCTTGGGCATACATGATACACCAACATTACAGGCAAAGGAAAACCTTTTTGTTGAACAAGGATGGCAGGGCCGTTGCCTGGGACATGCTTAAAGTATACAGTGATTTTGTTGAAGCTCAAGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGCATATGATGCAGGAGCACTACTGCGTGGCTTATGCAATCAATGATGCACTGGGTCTGTTTGGTGACTTCGGTTTTCTTAACCACCGCCGCCAGCAGCCGCAGCCACACGTGCTGAACCCCTCCTCATCAGCATCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0016740 GO:0016741 GO:0023051 GO:0023057 GO:0032259 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCM

Protein Analysis

345

Amino Acids

39.72

Weight (kDa)

6.36

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02100 AT1G02100 AT1G02100
fragaria_vesca	FvH4_7g10160 FvH4_7g10160 FvH4_7g10160 FvH4_7g10160
malus_domestica	MD02G1211800.v1.1 MD07G1108400.v1.1
prunus_persica	Prupe.2G131200_v2.0.a1
pyrus_communis	pycom02g17670 pycom07g09300
rosa_chinensis	RchiOBHm_Chr1g0347871
rosa_laevigata	RLG00000028707
rosa_multiflora	Rmu_ssc0000342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00307410
rosa_rugosa	Rorug01G0190300
rosa_samantha	Rh1AG208400 Rh1BG172900 Rh1CG192700 Rh1DG202800
rosa_wichuraiana	Rw1G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	506, 545
AasI	GACNNNNNNGTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	819
AccII	CGCG	2 cut(s)	10, 153
AciI	CCGC	7 cut(s)	151, 153, 181, 221, 979, 982, 992
AclWI	GGATC	4 cut(s)	518, 531, 569, 582
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	881
AcvI	CACGTG	1 cut(s)	1003
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	801
AflIII	ACRYGT	1 cut(s)	1000
AhlI	ACTAGT	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	800
AluBI	AGCT	7 cut(s)	187, 266, 292, 331, 460, 515, 839
AluI	AGCT	7 cut(s)	187, 266, 292, 331, 460, 515, 839
Alw21I	GWGCWC	3 cut(s)	444, 723, 912
Alw44I	GTGCAC	1 cut(s)	719
AlwI	GGATC	4 cut(s)	518, 531, 569, 582
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	3 cut(s)	54, 360, 792
ApaLI	GTGCAC	1 cut(s)	719
ApeKI	GCWGC	6 cut(s)	12, 173, 292, 676, 988, 994
ApoI	RAATTY	1 cut(s)	881
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	792
AsuHPI	GGTGA	3 cut(s)	236, 968, 1020
AvaI	CYCGRG	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	723
BamHI	GGATCC	2 cut(s)	523, 574
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
BbrPI	CACGTG	1 cut(s)	1003
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	3 cut(s)	444, 723, 912
BbvI	GCAGC	6 cut(s)	24, 160, 279, 688, 1000, 1006
BccI	CCATC	2 cut(s)	597, 779
BceAI	ACGGC	2 cut(s)	642, 779
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	802
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	293
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	8 cut(s)	13, 174, 293, 677, 982, 989, 992, 995
BlsI	GCNGC	8 cut(s)	14, 175, 294, 678, 983, 990, 993, 996
Bme1390I	CCNGG	1 cut(s)	802
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	792
BmiI	GGNNCC	2 cut(s)	525, 576
BmrFI	CCNGG	1 cut(s)	802
BmrI	ACTGGG	1 cut(s)	953
BmsI	GCATC	4 cut(s)	422, 655, 891, 928
BmuI	ACTGGG	1 cut(s)	953
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	4 cut(s)	121, 153, 426, 458
BpuEI	CTTGAG	1 cut(s)	825
Bsa29I	ATCGAT	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	1003
BsaBI	GATNNNNATC	1 cut(s)	607
BsaJI	CCNNGG	2 cut(s)	151, 801
Bsc4I	CCNNNNNNNGG	1 cut(s)	801
Bse1I	ACTGG	1 cut(s)	948
Bse8I	GATNNNNATC	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	802
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	2 cut(s)	151, 801
BseGI	GGATG	3 cut(s)	304, 655, 790
BseJI	GATNNNNATC	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	801
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	948
BseRI	GAGGAG	1 cut(s)	1006
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	6 cut(s)	24, 160, 279, 688, 1000, 1006
BsgI	GTGCAG	1 cut(s)	400
Bsh1236I	CGCG	2 cut(s)	10, 153
BshFI	GGCC	3 cut(s)	56, 362, 794
BshVI	ATCGAT	1 cut(s)	687
BsiHKAI	GWGCWC	3 cut(s)	444, 723, 912
BsiHKCI	CYCGRG	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	407, 818
BslI	CCNNNNNNNGG	1 cut(s)	801
BsmFI	GGGAC	2 cut(s)	407, 818
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	56, 362, 794
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	3 cut(s)	444, 723, 912
Bsp143I	GATC	5 cut(s)	134, 523, 574, 684, 688
BspACI	CCGC	7 cut(s)	151, 153, 181, 221, 979, 982, 992
BspANI	GGCC	3 cut(s)	56, 362, 794
BspCNI	CTCAG	1 cut(s)	456
BspDI	ATCGAT	1 cut(s)	687
BspFNI	CGCG	2 cut(s)	10, 153
BspLI	GGNNCC	2 cut(s)	525, 576
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	4 cut(s)	518, 531, 569, 582
BsrI	ACTGG	1 cut(s)	948
BssECI	CCNNGG	2 cut(s)	151, 801
BssMI	GATC	5 cut(s)	134, 523, 574, 684, 688
BssNAI	GTATAC	1 cut(s)	820
Bst1107I	GTATAC	1 cut(s)	820
Bst2UI	CCWGG	1 cut(s)	802
Bst4CI	ACNGT	2 cut(s)	66, 824
BstAPI	GCANNNNNTGC	1 cut(s)	901
BstBAI	YACGTR	1 cut(s)	1003
BstC8I	GCNNGC	3 cut(s)	58, 268, 986
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	304, 655, 790
BstFNI	CGCG	2 cut(s)	10, 153
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	137, 526, 577, 687, 691
BstMBI	GATC	5 cut(s)	134, 523, 574, 684, 688
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 170, 901, 994, 1003
BstNI	CCWGG	1 cut(s)	802
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	1 cut(s)	800
BstSFI	CTRYAG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	2 cut(s)	10, 153
BstV1I	GCAGC	6 cut(s)	24, 160, 279, 688, 1000, 1006
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	3 cut(s)	134, 523, 574
BstYI	RGATCY	3 cut(s)	134, 523, 574
BstZ17I	GTATAC	1 cut(s)	820
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	3 cut(s)	56, 362, 794
BsuTUI	ATCGAT	1 cut(s)	687
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	304, 655, 790
BtsIMutI	CAGTG	3 cut(s)	451, 829, 941
Cac8I	GCNNGC	3 cut(s)	58, 268, 986
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	792
Cfr42I	CCGCGG	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	687
CseI	GACGC	2 cut(s)	56, 858
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	4 cut(s)	88, 736, 808, 1032
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	5 cut(s)	136, 525, 576, 686, 690
DpnII	GATC	5 cut(s)	134, 523, 574, 684, 688
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	1003
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	800
FaeI	CATG	4 cut(s)	91, 739, 811, 1035
FaqI	GGGAC	2 cut(s)	407, 818
FatI	CATG	4 cut(s)	87, 735, 807, 1031
FauI	CCCGC	1 cut(s)	214
FauNDI	CATATG	1 cut(s)	897
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	8 cut(s)	13, 174, 293, 677, 982, 989, 992, 995
FokI	GGATG	3 cut(s)	311, 642, 797
Fsp4HI	GCNGC	8 cut(s)	13, 174, 293, 677, 982, 989, 992, 995
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	8 cut(s)	13, 174, 293, 677, 982, 989, 992, 995
HaeIII	GGCC	3 cut(s)	56, 362, 794
HgaI	GACGC	2 cut(s)	56, 858
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	4 cut(s)	91, 739, 811, 1035
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	5, 193, 581, 652, 708
HphI	GGTGA	3 cut(s)	236, 968, 1020
Hpy166II	GTNNAC	2 cut(s)	721, 820
Hpy188I	TCNGA	2 cut(s)	141, 528
Hpy188III	TCNNGA	7 cut(s)	203, 423, 425, 578, 659, 695, 842
Hpy8I	GTNNAC	2 cut(s)	721, 820
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	3 cut(s)	206, 352, 542
HpyCH4III	ACNGT	2 cut(s)	66, 824
HpyCH4IV	ACGT	2 cut(s)	377, 1002
HpyCH4V	TGCA	7 cut(s)	295, 381, 551, 721, 904, 929, 941
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 170, 901, 994, 1003
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	2 cut(s)	377, 1002
Hsp92II	CATG	4 cut(s)	91, 739, 811, 1035
HspAI	GCGC	1 cut(s)	10
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	134, 523, 574, 684, 688
LmnI	GCTCC	2 cut(s)	263, 907
Lsp1109I	GCAGC	6 cut(s)	24, 160, 279, 688, 1000, 1006
LweI	GCATC	4 cut(s)	422, 655, 891, 928
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	377, 1002
MaeIII	GTNAC	5 cut(s)	155, 346, 446, 479, 956
MalI	GATC	5 cut(s)	136, 525, 576, 686, 690
MboI	GATC	5 cut(s)	134, 523, 574, 684, 688
MboII	GAAGA	5 cut(s)	88, 132, 144, 253, 899
MflI	RGATCY	3 cut(s)	134, 523, 574
MhlI	GDGCHC	3 cut(s)	444, 723, 912
MluCI	AATT	5 cut(s)	399, 491, 546, 869, 881
MlyI	GAGTC	1 cut(s)	717
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	295, 337, 384, 706, 1024, 1027
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	4 cut(s)	147, 339, 813, 972
MslI	CAYNNNNRTG	2 cut(s)	660, 1030
MspA1I	CMGCKG	2 cut(s)	153, 292
MspR9I	CCNGG	1 cut(s)	802
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	802
MvnI	CGCG	2 cut(s)	10, 153
MwoI	GCNNNNNNNGC	5 cut(s)	32, 170, 901, 994, 1003
NdeI	CATATG	1 cut(s)	897
NdeII	GATC	5 cut(s)	134, 523, 574, 684, 688
NlaIII	CATG	4 cut(s)	91, 739, 811, 1035
NlaIV	GGNNCC	2 cut(s)	525, 576
NmuCI	GTSAC	3 cut(s)	446, 479, 956
NspI	RCATGY	1 cut(s)	811
PaeR7I	CTCGAG	1 cut(s)	423
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	5, 193, 581, 652
PkrI	GCNGC	8 cut(s)	14, 175, 294, 678, 983, 990, 993, 996
PleI	GAGTC	1 cut(s)	716
PmaCI	CACGTG	1 cut(s)	1003
PmlI	CACGTG	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	716
Ppu21I	YACGTR	1 cut(s)	1003
PsiI	TTATAA	2 cut(s)	506, 545
Psp6I	CCWGG	1 cut(s)	800
PspCI	CACGTG	1 cut(s)	1003
PspGI	CCWGG	1 cut(s)	800
PspN4I	GGNNCC	2 cut(s)	525, 576
PspPI	GGNCC	1 cut(s)	792
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	3 cut(s)	134, 523, 574
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	2 cut(s)	660, 1030
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	4 cut(s)	147, 339, 813, 972
SatI	GCNGC	8 cut(s)	13, 174, 293, 677, 982, 989, 992, 995
Sau3AI	GATC	5 cut(s)	134, 523, 574, 684, 688
Sau96I	GGNCC	1 cut(s)	792
SchI	GAGTC	1 cut(s)	717
ScrFI	CCNGG	1 cut(s)	802
SduI	GDGCHC	3 cut(s)	444, 723, 912
SfaNI	GCATC	4 cut(s)	422, 655, 891, 928
SfcI	CTRYAG	1 cut(s)	293
Sfr274I	CTCGAG	1 cut(s)	423
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	660, 1030
SmlI	CTYRAG	2 cut(s)	423, 840
SmoI	CTYRAG	2 cut(s)	423, 840
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	5 cut(s)	399, 491, 546, 869, 881
SsiI	CCGC	7 cut(s)	151, 153, 181, 221, 979, 982, 992
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	800
TaaI	ACNGT	2 cut(s)	66, 824
TaiI	ACGT	2 cut(s)	380, 1005
TaqI	TCGA	3 cut(s)	424, 687, 711
TasI	AATT	5 cut(s)	399, 491, 546, 869, 881
TauI	GCSGC	2 cut(s)	984, 994
TfiI	GAWTC	4 cut(s)	5, 193, 581, 652
Tru1I	TTAA	4 cut(s)	147, 339, 813, 972
Tru9I	TTAA	4 cut(s)	147, 339, 813, 972
TscAI	CASTG	3 cut(s)	451, 829, 948
TseFI	GTSAC	3 cut(s)	446, 479, 956
TseI	GCWGC	6 cut(s)	12, 173, 292, 676, 988, 994
Tsp45I	GTSAC	3 cut(s)	446, 479, 956
TspDTI	ATGAA	3 cut(s)	104, 644, 894
TspRI	CASTG	3 cut(s)	451, 829, 948
VneI	GTGCAC	1 cut(s)	719
XapI	RAATTY	1 cut(s)	881
XceI	RCATGY	1 cut(s)	811
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	819
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.