Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009548

Physical Location & Seq

Genomic Coordinates Reverse (-)

15846840 .. 15865371

Gene Structure 18532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17670.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTCGCACAGCAACAAAGAAGCAGTTCAAGCAACAAACGACGACGCCTCGGCCAGCAAACTGTCGTGCGTGAAGAAAGGGTACATGAAAGACGATTATGTCCATTTGTTTGTGAGAAGACCTGTGAGAAGATCTCCGATTATTAACCGTGGTTACTTTGCACGTTGGGCCGCTCTGCGGAAGCTTCTAAATCAGTTTCTTGATGCCGGAGGAAATGGTGGCGAAAAGGGTCATTTGAAGAAGCAGATATTATCACTTGGAGCTGGCTTTGATACAACATATTTTCAGCTGCAGGATGAGGGGAGAGCACCATATTTATATGTTGAGCTGGATTTTAAGGAGGTAACTAGTAAGAAGGCCACACTTATTGAAACGTGCAGTCATTTGAGGGACAAAATTAGTGCAACAGCATCAATCTCTCGAGAGAGTGGAGAAGTGCTCAGTGACCACTACAAGCTACTTCCTGTTGATTTACGTGACATACCAAAACTAGACGATGTTATAGCTTTAGCTGGTATGAATCCGAGTCTTCCAACTTTTATAATTGCAGAATGCGTTTTGATATACTTGGATCCAGATTCAAGTCGTTCCATACTTAGATGGACAGCAAAAGCATTTTCTACGGCAGTATTTTTCTTATATGAGCAGATTCATCCGGATGATGCTTTTGGGCAGCAGATGATCAGAAACTTGGAGAGTCGAGGCTGTTCGCTCTTGGGCATACATGATACACCAACATTACAGGCAAAGGAAAACCTTTTTGTTGACCAAGGATGGCAGAGGGCTGTTGCCTGGGACATGCTTAAAGTGTACAGTGATTTTGTTGAAGCTCAAGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGCATATGATGCAGGAGCACTACTGCGTAGCTTATGCAATCAATGATGCACTGGGTCTGTTCGGTGATTTTGGGTTTCTTAACAGCCACCACGTCCACCAGCAGCCTCAGCCGCACGTGCTCAACCCCTCCTCGTCAGCATCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0016740 GO:0016741 GO:0023051 GO:0023057 GO:0032259 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCM

Protein Analysis

345

Amino Acids

39.09

Weight (kDa)

5.91

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02100 AT1G02100 AT1G02100
fragaria_vesca	FvH4_7g10160 FvH4_7g10160 FvH4_7g10160 FvH4_7g10160
malus_domestica	MD02G1211800.v1.1 MD07G1108400.v1.1
prunus_persica	Prupe.2G131200_v2.0.a1
pyrus_communis	pycom02g17670 pycom07g09300
rosa_chinensis	RchiOBHm_Chr1g0347871
rosa_laevigata	RLG00000028707
rosa_multiflora	Rmu_ssc0000342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00307410
rosa_rugosa	Rorug01G0190300
rosa_samantha	Rh1AG208400 Rh1BG172900 Rh1CG192700 Rh1DG202800
rosa_wichuraiana	Rw1G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AasI	GACNNNNNNGTC	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	3 cut(s)	174, 181, 998
AclWI	GGATC	2 cut(s)	569, 582
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	875
AcvI	CACGTG	1 cut(s)	1003
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	86, 815
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	7 cut(s)	32, 241, 374, 585, 830, 854, 881
AhlI	ACTAGT	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	979
AjnI	CCWGG	1 cut(s)	794
AluBI	AGCT	9 cut(s)	187, 266, 292, 331, 460, 509, 515, 833, 917
AluI	AGCT	9 cut(s)	187, 266, 292, 331, 460, 509, 515, 833, 917
Alw21I	GWGCWC	4 cut(s)	313, 444, 906, 1008
AlwI	GGATC	2 cut(s)	569, 582
Ama87I	CYCGRG	1 cut(s)	423
Aor13HI	TCCGGA	1 cut(s)	658
AoxI	GGCC	3 cut(s)	54, 171, 360
ApeKI	GCWGC	3 cut(s)	292, 676, 988
ApoI	RAATTY	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	962
AvaI	CYCGRG	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	574
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
BbrPI	CACGTG	1 cut(s)	1003
BbsI	GAAGAC	2 cut(s)	127, 524
Bbv12I	GWGCWC	4 cut(s)	313, 444, 906, 1008
BbvCI	CCTCAGC	1 cut(s)	993
BbvI	GCAGC	3 cut(s)	279, 688, 1000
BccI	CCATC	2 cut(s)	597, 771
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	796
BclI	TGATCA	1 cut(s)	684
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	2 cut(s)	351, 494
BfmI	CTRYAG	1 cut(s)	293
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	5 cut(s)	174, 293, 677, 989, 998
BlsI	GCNGC	5 cut(s)	175, 294, 678, 990, 999
Bme1390I	CCNGG	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	423
BmgBI	CACGTC	1 cut(s)	979
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	796
BmrI	ACTGGG	1 cut(s)	947
BmsI	GCATC	5 cut(s)	196, 422, 655, 885, 922
BmuI	ACTGGG	1 cut(s)	947
BpiI	GAAGAC	2 cut(s)	127, 524
BplI	GAGNNNNNCTC	4 cut(s)	121, 153, 426, 458
Bpu10I	CCTNAGC	1 cut(s)	993
BpuEI	CTTGAG	1 cut(s)	819
BsaAI	YACGTR	2 cut(s)	479, 1003
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	51, 151, 772, 795
BsaWI	WCCGGW	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	942
BseAI	TCCGGA	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	796
BseDI	CCNNGG	4 cut(s)	51, 151, 772, 795
BseGI	GGATG	4 cut(s)	304, 655, 667, 782
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	457, 1007
BseNI	ACTGG	1 cut(s)	942
BseRI	GAGGAG	1 cut(s)	1006
BseXI	GCAGC	3 cut(s)	279, 688, 1000
BsgI	GTGCAG	1 cut(s)	400
BshFI	GGCC	3 cut(s)	56, 173, 362
BsiHKAI	GWGCWC	4 cut(s)	313, 444, 906, 1008
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	210, 659
BslFI	GGGAC	2 cut(s)	407, 812
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	407, 812
BsmI	GAATGC	1 cut(s)	560
BsnI	GGCC	3 cut(s)	56, 173, 362
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	4 cut(s)	313, 444, 906, 1008
Bsp13I	TCCGGA	1 cut(s)	658
Bsp1407I	TGTACA	1 cut(s)	813
Bsp143I	GATC	3 cut(s)	134, 574, 684
BspACI	CCGC	3 cut(s)	174, 181, 998
BspANI	GGCC	3 cut(s)	56, 173, 362
BspCNI	CTCAG	2 cut(s)	456, 1006
BspEI	TCCGGA	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	2 cut(s)	569, 582
BsrBI	CCGCTC	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	813
BsrI	ACTGG	1 cut(s)	942
BssECI	CCNNGG	4 cut(s)	51, 151, 772, 795
BssMI	GATC	3 cut(s)	134, 574, 684
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	772
Bst2UI	CCWGG	1 cut(s)	796
Bst4CI	ACNGT	3 cut(s)	66, 152, 818
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	895
BstAUI	TGTACA	1 cut(s)	813
BstBAI	YACGTR	2 cut(s)	479, 1003
BstC8I	GCNNGC	2 cut(s)	58, 268
BstDEI	CTNAG	3 cut(s)	443, 599, 993
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	4 cut(s)	304, 655, 667, 782
BstKTI	GATC	3 cut(s)	137, 577, 687
BstMBI	GATC	3 cut(s)	134, 574, 684
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 170, 895, 994, 997, 1003
BstNI	CCWGG	1 cut(s)	796
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	1 cut(s)	794
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	3 cut(s)	279, 688, 1000
BstV2I	GAAGAC	2 cut(s)	127, 524
BstX2I	RGATCY	2 cut(s)	134, 574
BstYI	RGATCY	2 cut(s)	134, 574
BsuRI	GGCC	3 cut(s)	56, 173, 362
BtgI	CCRYGG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	979
BtsCI	GGATG	4 cut(s)	304, 655, 667, 782
BtsIMutI	CAGTG	3 cut(s)	451, 823, 935
Cac8I	GCNNGC	2 cut(s)	58, 268
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	2 cut(s)	56, 852
Csp6I	GTAC	2 cut(s)	85, 814
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	3 cut(s)	88, 728, 802
CviQI	GTAC	2 cut(s)	85, 814
DdeI	CTNAG	3 cut(s)	443, 599, 993
DpnI	GATC	3 cut(s)	136, 576, 686
DpnII	GATC	3 cut(s)	134, 574, 684
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	772
Eco72I	CACGTG	1 cut(s)	1003
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	3 cut(s)	91, 731, 805
FaqI	GGGAC	2 cut(s)	407, 812
FatI	CATG	3 cut(s)	87, 727, 801
FauNDI	CATATG	1 cut(s)	891
FbaI	TGATCA	1 cut(s)	684
Fnu4HI	GCNGC	5 cut(s)	174, 293, 677, 989, 998
FokI	GGATG	4 cut(s)	311, 642, 674, 789
Fsp4HI	GCNGC	5 cut(s)	174, 293, 677, 989, 998
FspBI	CTAG	2 cut(s)	351, 494
GluI	GCNGC	5 cut(s)	174, 293, 677, 989, 998
HaeIII	GGCC	3 cut(s)	56, 173, 362
HapII	CCGG	2 cut(s)	210, 659
HgaI	GACGC	2 cut(s)	56, 852
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	3 cut(s)	91, 731, 805
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	6 cut(s)	5, 523, 529, 581, 652, 700
HpaII	CCGG	2 cut(s)	210, 659
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	3 cut(s)	769, 814, 982
Hpy188I	TCNGA	3 cut(s)	141, 528, 689
Hpy188III	TCNNGA	6 cut(s)	203, 423, 425, 578, 659, 836
Hpy8I	GTNNAC	3 cut(s)	769, 814, 982
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	3 cut(s)	66, 152, 818
HpyCH4IV	ACGT	5 cut(s)	166, 377, 478, 978, 1002
HpyCH4V	TGCA	8 cut(s)	164, 295, 381, 407, 551, 898, 923, 935
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 170, 895, 994, 997, 1003
HpyF3I	CTNAG	3 cut(s)	443, 599, 993
HpySE526I	ACGT	5 cut(s)	166, 377, 478, 978, 1002
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	3 cut(s)	91, 731, 805
Kpn2I	TCCGGA	1 cut(s)	658
Ksp22I	TGATCA	1 cut(s)	684
Kzo9I	GATC	3 cut(s)	134, 574, 684
LmnI	GCTCC	2 cut(s)	263, 901
Lsp1109I	GCAGC	3 cut(s)	279, 688, 1000
LweI	GCATC	5 cut(s)	196, 422, 655, 885, 922
MaeI	CTAG	2 cut(s)	351, 494
MaeII	ACGT	5 cut(s)	166, 377, 478, 978, 1002
MaeIII	GTNAC	4 cut(s)	155, 346, 446, 479
MalI	GATC	3 cut(s)	136, 576, 686
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	3 cut(s)	134, 574, 684
MboII	GAAGA	6 cut(s)	88, 132, 144, 253, 524, 893
MflI	RGATCY	2 cut(s)	134, 574
MhlI	GDGCHC	4 cut(s)	313, 444, 906, 1008
MluCI	AATT	4 cut(s)	399, 546, 863, 875
MlyI	GAGTC	2 cut(s)	538, 709
MmeI	TCCRAC	1 cut(s)	560
MroI	TCCGGA	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	4 cut(s)	147, 339, 807, 966
MslI	CAYNNNNRTG	2 cut(s)	660, 1030
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	2 cut(s)	210, 659
MspR9I	CCNGG	1 cut(s)	796
Mva1269I	GAATGC	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	796
MwoI	GCNNNNNNNGC	6 cut(s)	32, 170, 895, 994, 997, 1003
NdeI	CATATG	1 cut(s)	891
NdeII	GATC	3 cut(s)	134, 574, 684
NlaIII	CATG	3 cut(s)	91, 731, 805
NlaIV	GGNNCC	1 cut(s)	576
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	446, 479
NspI	RCATGY	1 cut(s)	805
PaeR7I	CTCGAG	1 cut(s)	423
PctI	GAATGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	5, 523, 581, 652
PkrI	GCNGC	5 cut(s)	175, 294, 678, 990, 999
PleI	GAGTC	2 cut(s)	537, 708
PmaCI	CACGTG	1 cut(s)	1003
PmlI	CACGTG	1 cut(s)	1003
PpsI	GAGTC	2 cut(s)	537, 708
Ppu21I	YACGTR	2 cut(s)	479, 1003
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	794
PspCI	CACGTG	1 cut(s)	1003
PspGI	CCWGG	1 cut(s)	794
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	2 cut(s)	134, 574
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	86, 815
RsaNI	GTAC	2 cut(s)	85, 814
RseI	CAYNNNNRTG	2 cut(s)	660, 1030
SaqAI	TTAA	4 cut(s)	147, 339, 807, 966
SatI	GCNGC	5 cut(s)	174, 293, 677, 989, 998
Sau3AI	GATC	3 cut(s)	134, 574, 684
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	538, 709
ScrFI	CCNGG	1 cut(s)	796
SduI	GDGCHC	4 cut(s)	313, 444, 906, 1008
SfaNI	GCATC	5 cut(s)	196, 422, 655, 885, 922
SfcI	CTRYAG	1 cut(s)	293
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	660, 1030
SmlI	CTYRAG	2 cut(s)	423, 834
SmoI	CTYRAG	2 cut(s)	423, 834
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	4 cut(s)	399, 546, 863, 875
SsiI	CCGC	3 cut(s)	174, 181, 998
SspMI	CTAG	2 cut(s)	351, 494
StyD4I	CCNGG	1 cut(s)	794
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	3 cut(s)	66, 152, 818
TaiI	ACGT	5 cut(s)	169, 380, 481, 981, 1005
TaqI	TCGA	2 cut(s)	424, 703
TasI	AATT	4 cut(s)	399, 546, 863, 875
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	2 cut(s)	176, 1000
TfiI	GAWTC	4 cut(s)	5, 523, 581, 652
Tru1I	TTAA	4 cut(s)	147, 339, 807, 966
Tru9I	TTAA	4 cut(s)	147, 339, 807, 966
TscAI	CASTG	3 cut(s)	451, 823, 942
TseFI	GTSAC	2 cut(s)	446, 479
TseI	GCWGC	3 cut(s)	292, 676, 988
Tsp45I	GTSAC	2 cut(s)	446, 479
TspDTI	ATGAA	4 cut(s)	104, 536, 644, 888
TspRI	CASTG	3 cut(s)	451, 823, 942
XapI	RAATTY	1 cut(s)	875
XceI	RCATGY	1 cut(s)	805
XhoI	CTCGAG	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	351, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.