Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009548

Physical Location & Seq

Genomic Coordinates Forward (+)

12447323 .. 12454018

Gene Structure 6696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1108400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATTCGCGCAGCAACAAAGAAGCAGTTCAAGCAACAAACGACGACGCTTCGGCCAGCAAACTGTCGTGCGTGAAGAAAGGGTACATGAAAGACGATTATGTCCATTTGTTTGTGAGAAGACCTGTCAGAAGATCTCCGATTATTAACCGCGGGTACTTTGCTCGTTGGGCTGCTCTGCGGAAGCTTCTGAATCAGTTTCTTGATACCGAAGGAAATGCGTGTGAAAAGGGTCATTTGAAGAAGCAGATATTATCACTTGGAGCTGGCTTTGATACAACATATTTTCAGCTGCAGGATGAGGGGAAAGCACCACATTTGTATGTTGAGCTGGATTTTAAGGAGGTAACTAGTAAGAAGGCCACACTTATTGAAACGTGCAGTCATTTGAGGGACAAAATTAGTGCTACAGCATCAATCTCTCGAGAGAGTGGAGAAGTGCTCAGTGACCACTACAAGCTGCTTCCTGTTGATTTGCGTGACATACCAAAATTAGACGATGTTATAACTTTAGCTGGTATGGATCCGAGCCTTCCAACTTTTATAATTGCAGAATGTGTTTTGATATACCTGGATCCAGATTCAAGTCGTTCCATAGTTAGATGGACATCAAAAACATTTTCAACGGCAATATTTTTCTTGTATGAGCAGATTCATCCAGATGATGCTTTTGGGCAGCAGATGATCCGAAACTTGGAGAGTCGTGGCTGTTCACTCTTGGGCATACATGATACACCAACATTACAGGCAAAGGAAAACCTTTTTGTTGAACAAGGATGGCAGAGGGCTGTTGCCTGGGACATGCTTAAAGTATACAGTGATTTTGTTGAAGCTCAAGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGCATATGATGCAGGAGCACTACTGCGTGGCTTATGCAATCAATGATGCACTGGATCTGTTTGGTGACTTCGGTTTTCTTAACCACCGCCACCAGCAGCCGCAGCCACACGTGCCGAACCCCTCCTCATCAGCATCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0016740 GO:0016741 GO:0023051 GO:0023057 GO:0032259 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCM

Protein Analysis

343

Amino Acids

39.17

Weight (kDa)

5.76

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LCM	PF04072	39 - 202	7.5e-20	Leucine carboxyl methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02100 AT1G02100 AT1G02100
fragaria_vesca	FvH4_7g10160 FvH4_7g10160 FvH4_7g10160 FvH4_7g10160
malus_domestica	MD02G1211800.v1.1 MD07G1108400.v1.1
prunus_persica	Prupe.2G131200_v2.0.a1
pyrus_communis	pycom02g17670 pycom07g09300
rosa_chinensis	RchiOBHm_Chr1g0347871
rosa_laevigata	RLG00000028707
rosa_multiflora	Rmu_ssc0000342.1_g000006
rosa_roxburghii	Rroxscaffold_4G00307410
rosa_rugosa	Rorug01G0190300
rosa_samantha	Rh1AG208400 Rh1BG172900 Rh1CG192700 Rh1DG202800
rosa_wichuraiana	Rw1G017320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	506, 545
AasI	GACNNNNNNGTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	813
AccII	CGCG	2 cut(s)	10, 153
AciI	CCGC	5 cut(s)	151, 153, 181, 973, 986
AclWI	GGATC	6 cut(s)	518, 531, 569, 582, 679, 948
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	875
AcvI	CACGTG	1 cut(s)	997
AfaI	GTAC	2 cut(s)	86, 158
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	9 cut(s)	32, 241, 374, 585, 624, 770, 830, 854, 881
AhlI	ACTAGT	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	570, 794
AluBI	AGCT	7 cut(s)	187, 266, 292, 331, 460, 515, 833
AluI	AGCT	7 cut(s)	187, 266, 292, 331, 460, 515, 833
Alw21I	GWGCWC	2 cut(s)	444, 906
AlwI	GGATC	6 cut(s)	518, 531, 569, 582, 679, 948
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	54, 360
ApeKI	GCWGC	7 cut(s)	12, 173, 292, 460, 676, 982, 988
ApoI	RAATTY	1 cut(s)	875
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	12
AsuHPI	GGTGA	2 cut(s)	962, 1014
AvaI	CYCGRG	1 cut(s)	423
BamHI	GGATCC	2 cut(s)	523, 574
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
BbrPI	CACGTG	1 cut(s)	997
BbsI	GAAGAC	1 cut(s)	127
Bbv12I	GWGCWC	2 cut(s)	444, 906
BbvI	GCAGC	7 cut(s)	24, 160, 279, 447, 688, 994, 1000
BccI	CCATC	2 cut(s)	597, 771
BceAI	ACGGC	1 cut(s)	642
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	2 cut(s)	572, 796
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	2 cut(s)	293, 408
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	8 cut(s)	13, 174, 293, 461, 677, 983, 986, 989
BlsI	GCNGC	8 cut(s)	14, 175, 294, 462, 678, 984, 987, 990
Bme1390I	CCNGG	2 cut(s)	572, 796
BmeT110I	CYCGRG	1 cut(s)	423
BmiI	GGNNCC	2 cut(s)	525, 576
BmrFI	CCNGG	2 cut(s)	572, 796
BmsI	GCATC	4 cut(s)	422, 655, 885, 922
BpiI	GAAGAC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpuEI	CTTGAG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	997
BsaBI	GATNNNNATC	1 cut(s)	607
BsaJI	CCNNGG	2 cut(s)	151, 795
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	1 cut(s)	942
Bse8I	GATNNNNATC	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	572, 796
BseDI	CCNNGG	2 cut(s)	151, 795
BseGI	GGATG	3 cut(s)	304, 655, 782
BseJI	GATNNNNATC	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	942
BseRI	GAGGAG	1 cut(s)	1000
BseXI	GCAGC	7 cut(s)	24, 160, 279, 447, 688, 994, 1000
BsgI	GTGCAG	1 cut(s)	400
Bsh1236I	CGCG	2 cut(s)	10, 153
BshFI	GGCC	2 cut(s)	56, 362
BsiHKAI	GWGCWC	2 cut(s)	444, 906
BsiHKCI	CYCGRG	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	407, 812
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmFI	GGGAC	2 cut(s)	407, 812
BsnI	GGCC	2 cut(s)	56, 362
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	444, 906
Bsp143I	GATC	5 cut(s)	134, 523, 574, 684, 940
BspACI	CCGC	5 cut(s)	151, 153, 181, 973, 986
BspANI	GGCC	2 cut(s)	56, 362
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	2 cut(s)	10, 153
BspLI	GGNNCC	2 cut(s)	525, 576
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	6 cut(s)	518, 531, 569, 582, 679, 948
BsrI	ACTGG	1 cut(s)	942
BssECI	CCNNGG	2 cut(s)	151, 795
BssMI	GATC	5 cut(s)	134, 523, 574, 684, 940
BssNAI	GTATAC	1 cut(s)	814
Bst1107I	GTATAC	1 cut(s)	814
Bst2UI	CCWGG	2 cut(s)	572, 796
Bst4CI	ACNGT	2 cut(s)	66, 818
BstAPI	GCANNNNNTGC	1 cut(s)	895
BstBAI	YACGTR	1 cut(s)	997
BstC8I	GCNNGC	2 cut(s)	58, 268
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	304, 655, 782
BstFNI	CGCG	2 cut(s)	10, 153
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	137, 526, 577, 687, 943
BstMBI	GATC	5 cut(s)	134, 523, 574, 684, 940
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 170, 895, 988, 997
BstNI	CCWGG	2 cut(s)	572, 796
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	570, 794
BstSFI	CTRYAG	2 cut(s)	293, 408
BstUI	CGCG	2 cut(s)	10, 153
BstV1I	GCAGC	7 cut(s)	24, 160, 279, 447, 688, 994, 1000
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	4 cut(s)	134, 523, 574, 940
BstYI	RGATCY	4 cut(s)	134, 523, 574, 940
BstZ17I	GTATAC	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	56, 362
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	304, 655, 782
BtsIMutI	CAGTG	3 cut(s)	451, 823, 935
Cac8I	GCNNGC	2 cut(s)	58, 268
CfoI	GCGC	1 cut(s)	12
Cfr42I	CCGCGG	1 cut(s)	154
CseI	GACGC	2 cut(s)	56, 852
Csp6I	GTAC	2 cut(s)	85, 157
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	4 cut(s)	88, 728, 802, 1026
CviQI	GTAC	2 cut(s)	85, 157
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	5 cut(s)	136, 525, 576, 686, 942
DpnII	GATC	5 cut(s)	134, 523, 574, 684, 940
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	997
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	570, 794
FaeI	CATG	4 cut(s)	91, 731, 805, 1029
FaqI	GGGAC	2 cut(s)	407, 812
FatI	CATG	4 cut(s)	87, 727, 801, 1025
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	891
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	8 cut(s)	13, 174, 293, 461, 677, 983, 986, 989
FokI	GGATG	3 cut(s)	311, 642, 789
Fsp4HI	GCNGC	8 cut(s)	13, 174, 293, 461, 677, 983, 986, 989
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	8 cut(s)	13, 174, 293, 461, 677, 983, 986, 989
HaeIII	GGCC	2 cut(s)	56, 362
HgaI	GACGC	2 cut(s)	56, 852
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	4 cut(s)	91, 731, 805, 1029
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	5, 193, 581, 652, 700
HphI	GGTGA	2 cut(s)	962, 1014
Hpy166II	GTNNAC	2 cut(s)	713, 814
Hpy188I	TCNGA	5 cut(s)	131, 141, 192, 528, 689
Hpy188III	TCNNGA	6 cut(s)	203, 423, 425, 578, 659, 836
Hpy8I	GTNNAC	2 cut(s)	713, 814
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	3 cut(s)	206, 352, 542
HpyCH4III	ACNGT	2 cut(s)	66, 818
HpyCH4IV	ACGT	2 cut(s)	377, 996
HpyCH4V	TGCA	6 cut(s)	295, 381, 551, 898, 923, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 170, 895, 988, 997
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	2 cut(s)	377, 996
Hsp92II	CATG	4 cut(s)	91, 731, 805, 1029
HspAI	GCGC	1 cut(s)	10
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	134, 523, 574, 684, 940
LmnI	GCTCC	2 cut(s)	263, 901
Lsp1109I	GCAGC	7 cut(s)	24, 160, 279, 447, 688, 994, 1000
LweI	GCATC	4 cut(s)	422, 655, 885, 922
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	377, 996
MaeIII	GTNAC	4 cut(s)	346, 446, 479, 950
MalI	GATC	5 cut(s)	136, 525, 576, 686, 942
MboI	GATC	5 cut(s)	134, 523, 574, 684, 940
MboII	GAAGA	5 cut(s)	88, 132, 144, 253, 893
MflI	RGATCY	4 cut(s)	134, 523, 574, 940
MhlI	GDGCHC	2 cut(s)	444, 906
MluCI	AATT	5 cut(s)	399, 491, 546, 863, 875
MlyI	GAGTC	1 cut(s)	709
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	295, 337, 384, 777, 1018, 1021
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	4 cut(s)	147, 339, 807, 966
MslI	CAYNNNNRTG	3 cut(s)	321, 660, 1024
MspA1I	CMGCKG	2 cut(s)	153, 292
MspR9I	CCNGG	2 cut(s)	572, 796
MvaI	CCWGG	2 cut(s)	572, 796
MvnI	CGCG	2 cut(s)	10, 153
MwoI	GCNNNNNNNGC	5 cut(s)	32, 170, 895, 988, 997
NdeI	CATATG	1 cut(s)	891
NdeII	GATC	5 cut(s)	134, 523, 574, 684, 940
NlaIII	CATG	4 cut(s)	91, 731, 805, 1029
NlaIV	GGNNCC	2 cut(s)	525, 576
NmuCI	GTSAC	3 cut(s)	446, 479, 950
NspI	RCATGY	1 cut(s)	805
PaeR7I	CTCGAG	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	5, 193, 581, 652
PkrI	GCNGC	8 cut(s)	14, 175, 294, 462, 678, 984, 987, 990
PleI	GAGTC	1 cut(s)	708
PmaCI	CACGTG	1 cut(s)	997
PmlI	CACGTG	1 cut(s)	997
PpsI	GAGTC	1 cut(s)	708
Ppu21I	YACGTR	1 cut(s)	997
PsiI	TTATAA	2 cut(s)	506, 545
Psp6I	CCWGG	2 cut(s)	570, 794
PspCI	CACGTG	1 cut(s)	997
PspGI	CCWGG	2 cut(s)	570, 794
PspN4I	GGNNCC	2 cut(s)	525, 576
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	4 cut(s)	134, 523, 574, 940
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	86, 158
RsaNI	GTAC	2 cut(s)	85, 157
RseI	CAYNNNNRTG	3 cut(s)	321, 660, 1024
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	4 cut(s)	147, 339, 807, 966
SatI	GCNGC	8 cut(s)	13, 174, 293, 461, 677, 983, 986, 989
Sau3AI	GATC	5 cut(s)	134, 523, 574, 684, 940
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	572, 796
SduI	GDGCHC	2 cut(s)	444, 906
SfaNI	GCATC	4 cut(s)	422, 655, 885, 922
SfcI	CTRYAG	2 cut(s)	293, 408
Sfr274I	CTCGAG	1 cut(s)	423
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	3 cut(s)	321, 660, 1024
SmlI	CTYRAG	2 cut(s)	423, 834
SmoI	CTYRAG	2 cut(s)	423, 834
SpeI	ACTAGT	1 cut(s)	350
Sse9I	AATT	5 cut(s)	399, 491, 546, 863, 875
SsiI	CCGC	5 cut(s)	151, 153, 181, 973, 986
SspI	AATATT	1 cut(s)	633
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	570, 794
TaaI	ACNGT	2 cut(s)	66, 818
TaiI	ACGT	2 cut(s)	380, 999
TaqI	TCGA	1 cut(s)	424
TasI	AATT	5 cut(s)	399, 491, 546, 863, 875
TauI	GCSGC	1 cut(s)	988
TfiI	GAWTC	4 cut(s)	5, 193, 581, 652
Tru1I	TTAA	4 cut(s)	147, 339, 807, 966
Tru9I	TTAA	4 cut(s)	147, 339, 807, 966
TscAI	CASTG	3 cut(s)	451, 823, 942
TseFI	GTSAC	3 cut(s)	446, 479, 950
TseI	GCWGC	7 cut(s)	12, 173, 292, 460, 676, 982, 988
Tsp45I	GTSAC	3 cut(s)	446, 479, 950
TspDTI	ATGAA	3 cut(s)	104, 644, 888
TspRI	CASTG	3 cut(s)	451, 823, 942
XapI	RAATTY	1 cut(s)	875
XceI	RCATGY	1 cut(s)	805
XhoI	CTCGAG	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.